BAC Information

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BAC

Clone NameB6Ng01-260M23
Chromosome3 (Build37)19 (Build37)
Map Location 38,726,692 - 38,727,86922,171,951 - 22,172,466
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
Downstream geneFat4, LOC100041432, LOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260M23.bB6Ng01-260M23.g
ACCGA065639GA065640
length1,1741,156
definitionB6Ng01-260M23.b B6Ng01-260M23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,726,692 - 38,727,869)(22,171,951 - 22,172,466)
sequence
gaattcatccagtggcagaggctgcactgggtctaatagcacccaggttt
acatggtgtccatattctcctctccacagcctgtctgaaaaggccttttt
tcaatgtcatctcattctcttcctcctgggacccagaaaaccagcctcta
tatcctcacccaacaatttgcttctgctgtctttatttacccaatcaaac
tattagggaatgttcctctataatgttctttagggagctgaaatctggct
tttccaactaaatcagatagagcaccaacacccaactaaattcataactc
tactaaggactaccttggcaaacaagtggttttactgaagtgttaatccc
aagagcacatgtagaggtgactcccaggagcatagactactcaaaggcag
cagctgtctctgaaaatcccacaccagttcacatgaactcacgaaagcta
aatccccagagctctctcacaaattgccctcagctccatgggtctgaaag
ccacctctctatggcagatattgctacttctataagcttgatgatgaacc
ttgtgaatcttcttaatttagcgaacttcctgagacttgttagttgttac
ttcctgaatctcatgagcctcctgccttcttcctgtagaaaagagttttg
atccatagaaatttgtggcatagtattggtcatctgcaggttttgatgga
agaaataagaaccaatggtattatgtttctgtaaggtacagagacttcat
atgagtaacaacagaggctgtgaatctgttcattttgatatcatcaaatg
cttttctagtaccttctatggacatgagtaatagttgatcatcattagat
tctaaaactgaggtggggaatgtttgttcttaaaggtttcaaagagtatt
tattttatatatatatgagtgtgctgcttgcatatatgtctgtgtaactc
attgtaggaataaatttttacacctacatctaataagggttcaacctttc
ctctagtcctccacccagcagaggtagtagaaggaaaagttattaggatt
atgaggaagtgatctgtttcaacaatagttcttgggagtgagcttgaatc
ttcgtagccagcagtcatttccatagccaaacactaaattgactacgact
gcgagaacaagtctctatgcaggc

gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgcctcaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaattcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccacataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccagagctaaagggatctgcaaccctat
agtggacacatatgagctaccagtaccccggagctctgactctagctgca
tatatatcaaagatgctagtagcatcactgaaaggagagtccaattggac
ctgccacctttatatggtccagtaaggaaccaggtccaaagggatggtgg
ccaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38726692_38727869
seq2: B6Ng01-260M23.b_45_1218 (reverse)

seq1  GCCTGCATAGAGGACTGGTCT-GCAGCTGCTGAGTCATATTTAGTGTTT-  48
      ||||||||||||   || ||| ||||   |  ||||| ||||||||||| 
seq2  GCCTGCATAGAGACTTGTTCTCGCAG--TCGTAGTCA-ATTTAGTGTTTG  47

seq1  GCTATGGAAATGAACTGCTGCTAAAGAAGA-TCAAGCTCACTCCCAAAGG  97
      |||||||||||| |||||||   | ||||| |||||||||||||| ||| 
seq2  GCTATGGAAATG-ACTGCTGGCTACGAAGATTCAAGCTCACTCCC-AAGA  95

seq1  ACTATTGTTG-AACAGATTCACTTTCCTCAT-ATTCTAATAACTTTTCCT  145
      |||||||||| |||||| |||| |||||||| || |||||||||||||||
seq2  ACTATTGTTGAAACAGA-TCAC-TTCCTCATAATCCTAATAACTTTTCCT  143

seq1  TCTACTACCTCTGCTGGGTGGAGGACTAGAGGAAAGGTTGAACCCTTATT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACCTCTGCTGGGTGGAGGACTAGAGGAAAGGTTGAACCCTTATT  193

seq1  AGATGTAGGTTGTAAAAAATTTATTCCTACAATGAGTTACACAGACATAT  245
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGG-TGT-AAAAATTTATTCCTACAATGAGTTACACAGACATAT  241

seq1  ATGCAAGCAGCACACTCATATATATATAAAATAAATACTCTTTGAAACCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGCAGCACACTCATATATATATAAAATAAATACTCTTTGAAACCT  291

seq1  TTAAGAACAAACATTCCCCACCTCAGTTTTAGAATCTAATGATGATCAAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACAAACATTCCCCACCTCAGTTTTAGAATCTAATGATGATCAAC  341

seq1  TATTACTCATGTCCATAGAAGGTACTAGAAAAGCATTTGATGATATCAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTCATGTCCATAGAAGGTACTAGAAAAGCATTTGATGATATCAAA  391

seq1  ATGAACAGATTCACAGCCTCTGTTGTTACTCATATGAAGTCTCTGTACCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGATTCACAGCCTCTGTTGTTACTCATATGAAGTCTCTGTACCT  441

seq1  TACAGAAACATAATACCATTGGTTCTTATTTCTTCCATCAAAACCTGCAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAACATAATACCATTGGTTCTTATTTCTTCCATCAAAACCTGCAG  491

seq1  ATGACCAATACTATGCCACAAATTTCTATGGATCAAAACTCTTTTCTACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAATACTATGCCACAAATTTCTATGGATCAAAACTCTTTTCTACA  541

seq1  GGAAGAAGGCAGGAGGCTCATGAGATTCAGGAAGTAACAACTAACAAGTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGGCAGGAGGCTCATGAGATTCAGGAAGTAACAACTAACAAGTC  591

seq1  TCAGGAAGTTCGCTAAATTAAGAAGATTCACAAGGTTCATCATCAAGCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGTTCGCTAAATTAAGAAGATTCACAAGGTTCATCATCAAGCTT  641

seq1  ATAGAAGTAGCAATATCTGCCATAGAGAGGTGGCTTTCAGACCCATGGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTAGCAATATCTGCCATAGAGAGGTGGCTTTCAGACCCATGGAG  691

seq1  CTGAGGGCAATTTGTGAGAGAGCTCTGGGGATTTAGCTTTCGTGAGTTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCAATTTGTGAGAGAGCTCTGGGGATTTAGCTTTCGTGAGTTCA  741

seq1  TGTGAACTGGTGTGGGATTTTCAGAGACAGCTGCTGCCTTTGAGTAGTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTGGTGTGGGATTTTCAGAGACAGCTGCTGCCTTTGAGTAGTCT  791

seq1  ATGCTCCTGGGAGTCACCTCTACATGTGCTCTTGGGATTAACACTTCAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTGGGAGTCACCTCTACATGTGCTCTTGGGATTAACACTTCAGT  841

seq1  AAAACCACTTGTTTGCCAAGGTAGTCCTTAGTAGAGTTATGAATTTAGTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACTTGTTTGCCAAGGTAGTCCTTAGTAGAGTTATGAATTTAGTT  891

seq1  GGGTGTTGGTGCTCTATCTGATTTAGTTGGAAAAGCCAGATTTCAGCTCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGGTGCTCTATCTGATTTAGTTGGAAAAGCCAGATTTCAGCTCC  941

seq1  CTAAAGAACATTATAGAGGAACATTCCCTAATAGTTTGATTGGGTAAATA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAACATTATAGAGGAACATTCCCTAATAGTTTGATTGGGTAAATA  991

seq1  AAGACAGCAGAAGCAAATTGTTGGGTGAGGATATAGAGGCTGGTTTTCTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCAGAAGCAAATTGTTGGGTGAGGATATAGAGGCTGGTTTTCTG  1041

seq1  GGTCCCAGGAGGAAGAGAATGAGATGACATTGAAAAAAGGCCTTTTCAGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAGGAGGAAGAGAATGAGATGACATTGAAAAAAGGCCTTTTCAGA  1091

seq1  CAGGCTGTGGAGAGGAGAATATGGACACCATGTAAACCTGGGTGCTATTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTGGAGAGGAGAATATGGACACCATGTAAACCTGGGTGCTATTA  1141

seq1  GACCCAGTGCAGCCTCTGCCACTGGATGAATTC  1178
      |||||||||||||||||||||||||||||||||
seq2  GACCCAGTGCAGCCTCTGCCACTGGATGAATTC  1174


seq1: chr19_22171951_22172466
seq2: B6Ng01-260M23.g_1011_1219 (reverse)

seq1  CCCTGGCCACCATCCCTGGGATTACCATTAGTCGGGCAGGCAAGAAAGAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTATTAGAAGGTCAAAAAAAAAAATGTTTCAAGATAATGTTGAGGGAAAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTATAGGCATAGCAAGATGTTCAGCTGCCAGTGTTGCAGGTTTCCAAGTC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTCATTCATAGAACCTTGAGTTATTCATTTAGTGTTTTGCTGATTATTTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  ACCAAAAGTCCCCCATACCCACCCATCCCCACTCTCCTACCCACCCACTC  300
                                         |||  |||||   ||
seq2  ----------------------------------CCCTGGCCACC--ATC  14

seq1  CCCCTTTTTGGAAATGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCG  350
      ||    ||||||  ||  |||||    ||||||  ||||||||| | || 
seq2  CC----TTTGGACCTG--GTTCC---TTACTGGACCATATAAAGGTGGCA  55

seq1  TGTCCAATGGGCCTCT-CTTCCAGTGATGGCCGACTAGGCCATCTTTTGA  399
       ||||||| || |||| ||| ||||||||  | |||||  |||| |||||
seq2  GGTCCAATTGGACTCTCCTTTCAGTGATG--CTACTAG--CATC-TTTGA  100

seq1  TACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAAT  449
      || |||||||||||||||| |||||||||||||||||| ||| |||||  
seq2  TATATATGCAGCTAGAGTC-AGAGCTCCGGGGTACTGG-TAGCTCATA--  146

seq1  GTTTTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTC  499
       | | |||| |||||||||||||||||||||||||||  ||| |||||||
seq2  -TGTGTCCA-CTATAGGGTTGCAGATCCCTTTAGCTC--TGGCTACTTTC  192

seq1  TCTAGCTCCTCCATTGG  516
      |||||||||||||||||
seq2  TCTAGCTCCTCCATTGG  209


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