BAC Information

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BAC

Clone NameB6Ng01-260O19
Chromosome3 (Build37)
Map Location 76,488,665 - 76,619,063
singlet/doubletdoublet
Overlap geneFstl5
Upstream geneGolph4
Downstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260O19.bB6Ng01-260O19.g
ACCGA065724GA065725
length1,1421,025
definitionB6Ng01-260O19.b B6Ng01-260O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,617,921 - 76,619,063)(76,488,665 - 76,489,709)
sequence
gaattctgcaaatatgttaccgacaactgagattgttcagcacttgatgt
gtttatattgatttgtttgtagggctagcttatagtataatgtgtgtgta
agtattttgtggcagatggttctgtagtgcatattctttgtggaattcaa
agaaaaccccaatgcaggcattaagaaccaaaaggaagcaaattactagt
cactgattatacaaacacacacatattaaattagacaagctgagaagagt
aattatagcatgcagtagttcacaacaactatgcaaaatgatatgaaaag
tgggatgtgtgagaaacaacacccccattctgtaataacaaactcaagag
accagtgaaaatgatgcagtttttattttatcatccttcagaattaggaa
ccattatagacaaagccaaaatactagtagttaatcctttttatcctttt
tcttttcttttcttttcttttctttacttttctcttattttattttttca
ttttcctctttctttctttctttctttctttcgttcgttcgttcgttctt
tctttcttttttccttccttcctctctctctccctctctctctctctctc
tttctttcttttgatttgtattttctctctttagctctgactgtcctgta
actcagcctgaagaccatgctccccttaaactcagacctctttctacctc
tgcctcctgaatgctgtcattataggagtgtgccacaactgctagacaaa
atattttttgtttgtttgtttgtttgcttgtctttagattgtgtttatat
gtatgaatgtctcacctgcagatatgtaagtgtaacacatgtgtgtctgc
ttatcacaggttaaatgaaggtactaaattatgtggaactagaattaaag
atggctgagagcactatgtgggaattgggaattaagcccaggccctctac
aagggaacaagtgctcttaacagctgagacaatctaataatgcatgttat
atgaaaattattattaccattattgctgtgttgttgttgttaaatacact
ttgaacagtagtcttgtgtcctttatccaatataaaggaattttctactt
taccatagccattgttcttacgagaaccttaccgaagtagaa

gaattctctttgctcttagaacatcttgcttgtcttgtttctgacccata
ctttgtaagatgtggttttatttcctgagaaagactttcatattctccaa
gattatctggtagttttctgtcaacttgaccaaaacgaaagtcatttcag
aggaggagacctcagttgggaaaaatggctccataagatctggctgtggg
ccattctgtagggcatttttatattggtgattgataaccaagagtacagc
tcattgtggttggtgctatcactaggctgatagtcctggaatctagaaaa
tgataactggcctgcctttatgaacacaccagtgaatatccttcctccat
ggctcttgcatcagctcctgccatgtttgagttcttgtccttacttcctt
tgaagatgaacaatgatgcagaaaaggaggctgaagtaaactctttctcc
actaagttgctttgatcatagtgtttcaccacagcagtactaactcaaat
taagacaaagagtaaacataatccattccctatggtagtttgtacctaat
aaaatattgtgcacacacattaaaggaaggcatgaattcatggagatctt
aacatattatatacaattaatttgcataagttagtacatgcaagacacct
ttatttgtaacttgaatgatttaatgtggtcttcagaaaccctctatgag
agatcactcaggtgatatgtttttttttttttttttttttgatttttcca
gacatggtttctctgtgtagctctggctatcctgaaactcactctgtaga
ccaggctggcctcaaactcagaaattcacctgcctctgcctcccaagtgc
tgggattaaaggcgtgtgtcaccacaacccagcagtgttatattttaaag
aagagaaatacagaccctgcaaatcaaattagcatgtgtgagatctgaag
cagacatccaccctgggcccatattttagtcttatctgcaaatctcagta
gtcatgaaagatttgtagcttcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76617921_76619063
seq2: B6Ng01-260O19.b_48_1189 (reverse)

seq1  TTCTAC-TCTGTAAGTCTCT-GTAAGAACCATGCCTATGGTAAA-TAG-A  46
      |||||| || |||||  ||| |||||||| ||| |||||||||| ||| |
seq2  TTCTACTTCGGTAAGGTTCTCGTAAGAACAATGGCTATGGTAAAGTAGAA  50

seq1  TATTCCTTATATTTGGGATAAAGGACACAAAGACTACTGTTCAAAAGTGT  96
       ||||||| ||| | ||||||||||||| ||||||||||||| |||||||
seq2  AATTCCTT-TATATTGGATAAAGGACAC-AAGACTACTGTTC-AAAGTGT  97

seq1  ATATAACAACAACAACAACAGCAATAATGGTAATAATAATTTTCATATAA  146
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTTAACAACAACAAC-ACAGCAATAATGGTAATAATAATTTTCATATAA  146

seq1  CATGCATTTATAGATTGTCTCAGCTGTTAAGAGCACTTGTTCCCCTTGTA  196
      ||||||||  ||||||||||||||||||||||||||||||| ||||||||
seq2  CATGCATTATTAGATTGTCTCAGCTGTTAAGAGCACTTGTT-CCCTTGTA  195

seq1  GAGGGCCTGGGCTTAATTCCCAATTCCCACATAGTGCTCTCAGCCATCTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCTGGGCTTAATTCCCAATTCCCACATAGTGCTCTCAGCCATCTT  245

seq1  TAATTCTAGTTCCACATAATTTAGTACCTTCATTTAACCTGTGATAAGCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAGTTCCACATAATTTAGTACCTTCATTTAACCTGTGATAAGCA  295

seq1  GACACACATGTGTTACACTTACATATCTGCAGGTGAAACATTCATACATA  346
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACACACATGTGTTACACTTACATATCTGCAGGTGAGACATTCATACATA  345

seq1  TAAACACAATCTAAAGACAAGCAAACAAACAAACAAACAAAAAATATTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACAATCTAAAGACAAGCAAACAAACAAACAAACAAAAAATATTTT  395

seq1  GTCTAGCAGTTGTGGCACACTCCTATAATGACAGCATTCAGGAGGCAGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCAGTTGTGGCACACTCCTATAATGACAGCATTCAGGAGGCAGAG  445

seq1  GTAGAAAGAGGTCTGAGTTTAAGGGGAGCATGGTCTTCAGGCTGAGTTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAGAGGTCTGAGTTTAAGGGGAGCATGGTCTTCAGGCTGAGTTAC  495

seq1  AGGACAGTCAGAGCTAAAGAGAGAAAATACAAATCAAAAGAAAGAAAGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGTCAGAGCTAAAGAGAGAAAATACAAATCAAAAGAAAGAAAGAG  545

seq1  AGAGAGAGAGAGAGGGAGAGAGAGAGGAAGGAAGGAAAAAAGAAAGAAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGGGAGAGAGAGAGGAAGGAAGGAAAAAAGAAAGAAAG  595

seq1  AACGAACGAACGAACGAAAGAAAGAAAGAAAGAAAGAAAGAGGAAAATGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAACGAACGAACGAAAGAAAGAAAGAAAGAAAGAAAGAGGAAAATGA  645

seq1  AAAAATAAAATAAGAGAAAAGTAAAGAAAAGAAAAGAAAAGAAAAGAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAATAAGAGAAAAGTAAAGAAAAGAAAAGAAAAGAAAAGAAAA  695

seq1  AGGATAAAAAGGATTAACTACTAGTATTTTGGCTTTGTCTATAATGGTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAAAAGGATTAACTACTAGTATTTTGGCTTTGTCTATAATGGTTC  745

seq1  CTAATTCTGAAGGATGATAAAATAAAAACTGCATCATTTTCACTGGTCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCTGAAGGATGATAAAATAAAAACTGCATCATTTTCACTGGTCTC  795

seq1  TTGAGTTTGTTATTACAGAATGGGGGTGTTGTTTCTCACACATCCCACTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTGTTATTACAGAATGGGGGTGTTGTTTCTCACACATCCCACTT  845

seq1  TTCATATCATTTTGCATAGTTGTTGTGAACTACTGCATGCTATAATTACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCATTTTGCATAGTTGTTGTGAACTACTGCATGCTATAATTACT  895

seq1  CTTCTCAGCTTGTCTAATTTAATATGTGTGTGTTTGTATAATCAGTGACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGCTTGTCTAATTTAATATGTGTGTGTTTGTATAATCAGTGACT  945

seq1  AGTAATTTGCTTCCTTTTGGTTCTTAATGCCTGCATTGGGGTTTTCTTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTTGCTTCCTTTTGGTTCTTAATGCCTGCATTGGGGTTTTCTTTG  995

seq1  AATTCCACAAAGAATATGCACTACAGAACCATCTGCCACAAAATACTTAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCACAAAGAATATGCACTACAGAACCATCTGCCACAAAATACTTAC  1045

seq1  ACACACATTATACTATAAGCTAGCCCTACAAACAAATCAATATAAACACA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATTATACTATAAGCTAGCCCTACAAACAAATCAATATAAACACA  1095

seq1  TCAAGTGCTGAACAATCTCAGTTGTCGGTAACATATTTGCAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGCTGAACAATCTCAGTTGTCGGTAACATATTTGCAGAATTC  1142


seq1: chr3_76488665_76489709
seq2: B6Ng01-260O19.g_67_1091

seq1  GAATTCTCTTTGCTCTTAGAACATCTTGCTTGTCTTGTTTCTGACCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGCTCTTAGAACATCTTGCTTGTCTTGTTTCTGACCCATA  50

seq1  CTTTGTAAGATGTGGTTTTATTTCCTGAGAAAGACTTTCATATTCTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAAGATGTGGTTTTATTTCCTGAGAAAGACTTTCATATTCTCCAA  100

seq1  GATTATCTGGTAGTTTTCTGTCAACTTGACCAAAACGAAAGTCATTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTGGTAGTTTTCTGTCAACTTGACCAAAACGAAAGTCATTTCAG  150

seq1  AGGAGGAGACCTCAGTTGGGAAAAATGGCTCCATAAGATCTGGCTGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGACCTCAGTTGGGAAAAATGGCTCCATAAGATCTGGCTGTGGG  200

seq1  CCATTCTGTAGGGCATTTTTATATTGGTGATTGATAACCAAGAGTACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGTAGGGCATTTTTATATTGGTGATTGATAACCAAGAGTACAGC  250

seq1  TCATTGTGGTTGGTGCTATCACTAGGCTGATAGTCCTGGAATCTAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGGTTGGTGCTATCACTAGGCTGATAGTCCTGGAATCTAGAAAA  300

seq1  TGATAACTGGCCTGCCTTTATGAACACACCAGTGAATATCCTTCCTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTGGCCTGCCTTTATGAACACACCAGTGAATATCCTTCCTCCAT  350

seq1  GGCTCTTGCATCAGCTCCTGCCATGTTTGAGTTCTTGTCCTTACTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTGCATCAGCTCCTGCCATGTTTGAGTTCTTGTCCTTACTTCCTT  400

seq1  TGAAGATGAACAATGATGCAGAAAAGGAGGCTGAAGTAAACTCTTTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGAACAATGATGCAGAAAAGGAGGCTGAAGTAAACTCTTTCTCC  450

seq1  ACTAAGTTGCTTTGATCATAGTGTTTCACCACAGCAGTACTAACTCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTGCTTTGATCATAGTGTTTCACCACAGCAGTACTAACTCAAAT  500

seq1  TAAGACAAAGAGTAAACATAATCCATTCCCTATGGTAGTTTGTACCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAAGAGTAAACATAATCCATTCCCTATGGTAGTTTGTACCTAAT  550

seq1  AAAATATTGTGCACACACATTAAAGGAAGGCATGAATTCATGGAGATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTGTGCACACACATTAAAGGAAGGCATGAATTCATGGAGATCTT  600

seq1  AACATATTATATACAATTAATTTGCATAAGTTAGTACATGCAAGACACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTATATACAATTAATTTGCATAAGTTAGTACATGCAAGACACCT  650

seq1  TTATTTGTAACTTGAATGATTTAATGTGGTCTTCAGAAACCCTCTATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTAACTTGAATGATTTAATGTGGTCTTCAGAAACCCTCTATGAG  700

seq1  AGATCACTCAGGTGATATGTTTTTTTTTTTTTTTTTTTTTGATTTTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTCAGGTGATATGTTTTTTTTTTTTTTTTTTTTTGATTTTTCCA  750

seq1  GACATGGTTTCTCTGTGTAGCTCTGGCTATCCTGAAACTCACTCTGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGTTTCTCTGTGTAGCTCTGGCTATCCTGAAACTCACTCTGTAGA  800

seq1  CCAGGCTGGCCTCAAACTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCAAACTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGC  850

seq1  TGGGATTAAAGGCGTGTGTCACCACAACCCAGCAGGTGTTATAATTTTAA  900
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TGGGATTAAAGGCGTGTGTCACCACAACCCAGCA-GTGTTAT-ATTTTAA  898

seq1  AGAAGAGAAATACAGACCCTGCAAAATTCAAATTTAGCATGTGGTGAGAT  950
      |||||||||||||||||||||||||  ||||| ||||||||| |||||||
seq2  AGAAGAGAAATACAGACCCTGCAAA--TCAAA-TTAGCATGT-GTGAGAT  944

seq1  CTGAAAGCAGACATCCCAACCCTGGGCCCATATTTTTAGTCTTTATCTGC  1000
      ||| ||||||||||||  |||||||||||||| |||||||| ||||||||
seq2  CTG-AAGCAGACATCC--ACCCTGGGCCCATA-TTTTAGTC-TTATCTGC  989

seq1  AAATTCCTCAGTAGTCATTGATAGATTTGTAGCCTCCAGTTCAGT  1045
      ||||  ||||||||||| ||| |||||||||||      ||||||
seq2  AAAT--CTCAGTAGTCA-TGAAAGATTTGTAGC------TTCAGT  1025


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