BAC Information

Click to search

BAC

Clone NameB6Ng01-261A19
Chromosome3 (Build37)
Map Location 98,477,501 - 98,478,621
singlet/doubletsinglet
Overlap genenone
Upstream genePde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5
Downstream geneLOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15, M6pr-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261A19.bB6Ng01-261A19.g
ACCGA065816GA065817
length1,0891,122
definitionB6Ng01-261A19.b B6Ng01-261A19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccataccaaaacataataaaagcaataaacagaaaacta
gtagtcaacatcaaacaaaatggagagaaacttgaagcaatctcacagtc
ttgtatacttaagtgagttgcataggcatagtgcttatctaagagtaaca
atattaatttcaaaatatgtgtcaatatacaaatatttataccaatggca
acattaaacctgtgtcaaaatataaatactgtttgaatataggaaattaa
aatttcaattttacataaaatataaagatttctacaatttattattatta
ctattcaatgctttcagaattaatttagtaatccatcccatgtatttaat
ttcttacaatattaccctattccactttccacttttcctctacaaccccc
ttctttttactaaagaaatgatagaaaagaggaaagacagaaaaagccaa
gtttaagttcactatttagtttgtgtctgtttaaaagtatggccatttaa
aaataattccaatctataatttataaaataaccataaccagacaccctaa
cccaagggatcaagatggtgactctccacaacttattcctgctggagaaa
taattttttttaattggagcaatgaattttttaaggggtggggatggagt
agaaaaattagcaagacttaagaaagctggctttaacatctatccagtct
cagtatgcctaaaggttcagggcttgacttaaattctgactggattcatc
taaaaggctagatgaaccaagatcatcaggaatcagcagctattcctgaa
gctgttctggaagcaagtctttgggtatcagcaatcagatgtaggtagct
ggaagagtaggtcatttcagtatccccagtatgaatctttgccagagctg
aatattatgtaatatatgaaatctttaggaccaaattttagtacttataa
gacaattataagaactggtgcaaggtgcaccaaatcaacttagggatgaa
ttttttgcttcttgtctgataagttgaaataaaaactattacttttatga
gtttatctggatccaccacccaattgtaataaatctcta
gaattctttctttagctttgagtcccattttttaatagggtcatttgatt
ttctggagtccaccttttcgagttctttatatatattggataatagttcc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgaaggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgatacttgatcttacagcacaagccattgctgtt
ctattcaggaattttccccctgtattcatatcttcgaggcttttccctac
tttttcctctataagtttcagtgtctgaagctctttggacccaaatcagg
tgcttgggaagctttctgcatgggatggaattttccagacacagttgtca
gttatgcctatcttcaagggtagtcatggtgagaagacactggagaggag
ggctttctacagaaagaagcataaatgctcaaaaatcagaatgtagcagt
tgtagagtatgaggaagcatctatatctgccccatccctttgtagaaaat
gcatctgagcagtaagatgccacctgtgccttacacataaagagagaatt
atgggaaatccctacattcattaaagtaactggagagttggtggttaatc
agaatgtttcctccagagtcccagtgaggaagatccagaacaaggaggca
aaaacatggaaatttcaaagtctaatcaattttgatattttctgaagagt
tagcagaattactgagaggaaattgaggcctttgtgatgaactcagaaag
ggctccaatggttggttcagggaagtatttcttgtcagatttatttgttg
gttatgaggcaaccctcacctgataacatatacagggaaatggatacatc
agtatctttttgttcccctgttatctatcggtgatactagcattcccaat
gtcacacaaattatctcacaaattaatatgtgtccatggagcctgaacct
ctctcacactggctggagcttcatactttgcacatggcttttcttagttt
gcttgttcttttcttagctatttaatgatatctgaacatcattcagaatt
gtccttagtgtagtttgagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98477501_98478621
seq2: B6Ng01-261A19.g_64_1185

seq1  GAATTCTTTCTTTAGCTTTGAGTCCCATTTTTTAATAGGGTCATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTAGCTTTGAGTCCCATTTTTTAATAGGGTCATTTGATT  50

seq1  TTCTGGAGTCCACCTTTTCGAGTTCTTTATATATATTGGATAATAGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCTTTTCGAGTTCTTTATATATATTGGATAATAGTTCC  100

seq1  CTATCTGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGAAGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGAAGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTA  200

seq1  TGAGGTCCCATTTATCGATACTTGATCTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCATTTATCGATACTTGATCTTACAGCACAAGCCATTGCTGTT  250

seq1  CTATTCAGGAATTTTCCCCCTGTATTCATATCTTCGAGGCTTTTCCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGGAATTTTCCCCCTGTATTCATATCTTCGAGGCTTTTCCCTAC  300

seq1  TTTTTCCTCTATAAGTTTCAGTGTCTGAAGCTCTTTGGACCCAAATCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCTATAAGTTTCAGTGTCTGAAGCTCTTTGGACCCAAATCAGG  350

seq1  TGCTTGGGAAGCTTTCTGCATGGGATGGAATTTTCCAGACACAGTTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGAAGCTTTCTGCATGGGATGGAATTTTCCAGACACAGTTGTCA  400

seq1  GTTATGCCTATCTTCAAGGGTAGTCATGGTGAGAAGACACTGGAGAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCCTATCTTCAAGGGTAGTCATGGTGAGAAGACACTGGAGAGGAG  450

seq1  GGCTTTCTACAGAAAGAAGCATAAATGCTCAAAAATCAGAATGTAGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTACAGAAAGAAGCATAAATGCTCAAAAATCAGAATGTAGCAGT  500

seq1  TGTAGAGTATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGTATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAAT  550

seq1  GCATCTGAGCAGTAAGATGCCACCTGTGCCTTACACATAAAGAGAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGAGCAGTAAGATGCCACCTGTGCCTTACACATAAAGAGAGAATT  600

seq1  ATGGGAAATCCCTACATTCATTAAAGTAACTGGAGAGTTGGTGGTTAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAATCCCTACATTCATTAAAGTAACTGGAGAGTTGGTGGTTAATC  650

seq1  AGAATGTTTCCTCCAGAGTCCCAGTGAGGAAGATCCAGAACAAGGAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTTCCTCCAGAGTCCCAGTGAGGAAGATCCAGAACAAGGAGGCA  700

seq1  AAAACATGGAAATTTCAAAGTCTAATCAATTTTGATATTTTCTGAAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGGAAATTTCAAAGTCTAATCAATTTTGATATTTTCTGAAGAGT  750

seq1  TAGCAGAATTACTGAGAGGAAATTGAGGCCTTTGTGATGAACTCAGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAATTACTGAGAGGAAATTGAGGCCTTTGTGATGAACTCAGAAAG  800

seq1  GGCTCCAATGGTTGGTTCAGGGAAGTATTTCTTGTCAGATTTATTTGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAATGGTTGGTTCAGGGAAGTATTTCTTGTCAGATTTATTTGTTG  850

seq1  GTTATGAGGCAA-CCTCACCTGATAACATATACAGGGAAATGGATACATC  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTATGAGGCAACCCTCACCTGATAACATATACAGGGAAATGGATACATC  900

seq1  AGTATCTTTTTGTTCCCCTGTTATCTATCGGTTGATACTAGCAATCCCAA  949
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  AGTATCTTTTTGTTCCCCTGTTATCTATCGG-TGATACTAGCATTCCCAA  949

seq1  TGTCACACAAATTATCTCACAAAATTAATATGTGTCCATGGAGCCTGAAC  999
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTCACACAAATTATCTCAC-AAATTAATATGTGTCCATGGAGCCTGAAC  998

seq1  CTCTCCTCACACTGGCTGGAGCTTCATACTTTGCACATGGC-TTTCTTAG  1048
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCT-CTCACACTGGCTGGAGCTTCATACTTTGCACATGGCTTTTCTTAG  1047

seq1  TTTGCTTGTTCCTTTCTTAGCTATTTAATGATATCTGACATTCATTCAGA  1098
      ||||||||||| ||||||||||||||||||||||||||   |||||||||
seq2  TTTGCTTGTTCTTTTCTTAGCTATTTAATGATATCTGAACATCATTCAGA  1097

seq1  --TGTTCCTAGTGTAGTTTGAGAAA  1121
        ||| | |||||||||||||||||
seq2  ATTGTCCTTAGTGTAGTTTGAGAAA  1122