BAC Information

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BAC

Clone NameB6Ng01-261H01
Chromosome3 (Build37)
Map Location 92,046,650 - 92,047,746
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543
Downstream geneLOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261H01.bB6Ng01-261H01.g
ACCGA066109GA066110
length1,1991,107
definitionB6Ng01-261H01.b B6Ng01-261H01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaaaggaagaaaaaaatagctacaaaacatcgggaaaaaaaag
ttcattgctcatagcaatgaagaaaatgaaactcgaaacaattttgggat
cttatcttattccaaacagaattacaaaaagcaaacaacgaacaatagat
gctagaggagatgtggaaaaggaaccctaattcactgttggtggtgcagc
tgctctggaaattaatgttgaaaattctataaaggataaaaataaatctt
ccatatgacacagcattaccactccttgtaatatgtccaaaagactagac
atcctattccacggatacttgctcagccatattgacaatagacaggagat
ggaaacaatctaaatatcttcaaaccaataaacagataatgaaaatgtgg
tacattacactatgatactatccagctttaaagaaaaacaaaatcatata
cattacaggtaaatggatagaactaggaatgatcatgttcaatgaggtaa
tccagatggatacaacaaatatatcatgttgtgtctcacctgagtcacct
agcaccaaatcttaagatgtaaatatatatgtagcctggaataactgcta
aaacaaatgaggaaagaaaatagggtcatgccgcaggccctctggtcccc
tgtgcctgcataggaaagtgtctctagagtagatgggcagagattaggat
gtagtgatagtcagtcaaacatacaagagaggtgttgaatctgaatgtaa
tgttccagtcgagcatcagacttttataatacagaataaattgcagaaca
aggcacattgaattttttcaggtgcaaaaggagtgacttcaaaaggaacc
agataaatgtataacactagagattagcacagatgcaagggagtgactac
aaagggaatttgtagggaccagataaatgtttacattagagattagcact
ttctgccaggcaagagttttacacttagagttaattgcctcaggtagtta
actcttgacacgcctcagaataatgtagtgtcactgacccaaaattctct
agcttcgttatcttatctatatctgagactatcatttcagtatagtataa
caaatttgctctgccatggatgtagtctataataccgaatcatctcatgg
aaaattcagactctatttccgaaaccgtgaacttaacggcctaagcggc
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattttatctctattgtt
aaccagcaaatggaacctttaagctttgcaggaactttagttcatttggg
aatgaagataataaaagaccaaggaactcctgattcagcttgatttggag
tatttggtaggtggaggttgcaattcttttggctttgttttatttttgcc
ctctcaattaacattcaagactgaaatagtccgtagtccccagaggtgtg
ggcccaatacagttacaattccacctgaaaatcaatctacttctggttta
tttgaaaccctgccactcactcctatttattaaataccaaaccacccaga
agttatagcaaactgtacaattgaacaatactaactgttacttggatttt
tacaactgtatcatatgtttatcttgagactggagagatgcctctgtggt
gaaaagcatttgctcttcttggaaaggaccagggttcatatccaggtatc
catgccagggagctgacagataactaccagtaattccagttccagagggt
ctgacatactcttctagccttcacaggcaggcactgcccacatatagtgc
atttgtatagatacagagaaagtattcattgcatgtaaaatagaagcaaa
tacatatactttaaaaatatcaaatttgtagggtacaagctaagacaaaa
gatctaagaagcatgttgtgatgcttaggtgactaaaaatgttcaccaga
ggcaaaacagtttaggtggaggtgagctaaattcaaatgaacatctgtaa
tgtttacatgcaacatttatttaaaggacttcaaaacactgattttggtg
atcagcagtaaagtgttcattttatatcaatttgccccttggtggacttt
gtacctgaaagataagtttttgatcttgaagatccaagcctgtaaatata
ccttttccttgataacttccatatactcactcataccagaaagaaaattc
cagtcatttttcattgtcatgaccgcagaaattttgagttggcttctcag
aaaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92046650_92047746
seq2: B6Ng01-261H01.g_65_1171

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50

seq1  TCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTTTATCTCTATTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTTTATCTCTATTGTT  100

seq1  AACCAGCAAATGGAACCTTTAAGCTTTGCAGGAACTTTAGTTCATTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCAAATGGAACCTTTAAGCTTTGCAGGAACTTTAGTTCATTTGGG  150

seq1  AATGAAGATAATAAAAGACCAAGGAACTCCTGATTCAGCTTGATTTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGATAATAAAAGACCAAGGAACTCCTGATTCAGCTTGATTTGGAG  200

seq1  TATTTGGTAGGTGGAGGTTGCAATTCTTTTGGCTTTGTTTTATTTTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGTAGGTGGAGGTTGCAATTCTTTTGGCTTTGTTTTATTTTTGCC  250

seq1  CTCTCAATTAACATTCAAGACTGAAATAGTCCGTAGTCCCCAGAGGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAATTAACATTCAAGACTGAAATAGTCCGTAGTCCCCAGAGGTGTG  300

seq1  GGCCCAATACAGTTACAATTCCACCTGAAAATCAATCTACTTCTGGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAATACAGTTACAATTCCACCTGAAAATCAATCTACTTCTGGTTTA  350

seq1  TTTGAAACCCTGCCACTCACTCCTATTTATTAAATACCAAACCACCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACCCTGCCACTCACTCCTATTTATTAAATACCAAACCACCCAGA  400

seq1  AGTTATAGCAAACTGTACAATTGAACAATACTAACTGTTACTTGGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGCAAACTGTACAATTGAACAATACTAACTGTTACTTGGATTTT  450

seq1  TACAACTGTATCATATGTTTATCTTGAGACTGGAGAGATGCCTCTGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTGTATCATATGTTTATCTTGAGACTGGAGAGATGCCTCTGTGGT  500

seq1  GAAAAGCATTTGCTCTTCTTGGAAAGGACCAGGGTTCATATCCAGGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCATTTGCTCTTCTTGGAAAGGACCAGGGTTCATATCCAGGTATC  550

seq1  CATGCCAGGGAGCTGACAGATAACTACCAGTAATTCCAGTTCCAGAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAGGGAGCTGACAGATAACTACCAGTAATTCCAGTTCCAGAGGGT  600

seq1  CTGACATACTCTTCTAGCCTTCACAGGCAGGCACTGCCCACATATAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATACTCTTCTAGCCTTCACAGGCAGGCACTGCCCACATATAGTGC  650

seq1  ATTTGTATAGATACAGAGAAAGTATTCATTGCATGTAAAATAGAAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATAGATACAGAGAAAGTATTCATTGCATGTAAAATAGAAGCAAA  700

seq1  TACATATACTTTAAAAATATCAAA-TTGTAGGGTACAAGCTAAGACAAAA  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TACATATACTTTAAAAATATCAAATTTGTAGGGTACAAGCTAAGACAAAA  750

seq1  GATCTAAGAAGCATGTTGTGATGCTTAGGTGACTAAAAATGTTCACCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAGAAGCATGTTGTGATGCTTAGGTGACTAAAAATGTTCACCAGA  800

seq1  GGCAAAACAGTTTAGGTGGAGGTGAGCTAAATTCAAATGAACATCTGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACAGTTTAGGTGGAGGTGAGCTAAATTCAAATGAACATCTGTAA  850

seq1  TGTTTACATGCAACATTTATTTAAAGGACTTCAAAACACTGA-TTTGGTG  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTTTACATGCAACATTTATTTAAAGGACTTCAAAACACTGATTTTGGTG  900

seq1  ATCAGCAGTAAGGTGTTCATTTAATATC-AGTTGCCCCTTGGTGGACTTT  947
      ||||||||||| |||||||||| ||||| | |||||||||||||||||||
seq2  ATCAGCAGTAAAGTGTTCATTTTATATCAATTTGCCCCTTGGTGGACTTT  950

seq1  GTACCTG-AAGATAAGTTTTTTGATCCTGAAGATCC-AGCCTGT-AATAT  994
      ||||||| |||||||| ||||||||| ||||||||| ||||||| |||||
seq2  GTACCTGAAAGATAAG-TTTTTGATCTTGAAGATCCAAGCCTGTAAATAT  999

seq1  ACCTTTCCTTTGATAAC-TCCATATACTCACT-ATACCAGAAAGAAAAT-  1041
      |||||| | |||||||| |||||||||||||| |||||||||||||||| 
seq2  ACCTTTTCCTTGATAACTTCCATATACTCACTCATACCAGAAAGAAAATT  1049

seq1  -CAG-CA-TTTTCATTGTCATGGACAGCAGAAATTTGGAAGTATGCAT-T  1087
       ||| || ||||||||||||| ||| |||||||||| | |||  || | |
seq2  CCAGTCATTTTTCATTGTCAT-GACCGCAGAAATTTTG-AGTTGGCTTCT  1097

seq1  CAGAAAACTG  1097
      ||||||||||
seq2  CAGAAAACTG  1107