BAC Information

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BAC

Clone NameB6Ng01-261J08
Chromosome3 (Build37)
Map Location 59,440,700 - 59,548,946
singlet/doubletdoublet
Overlap geneLOC433597
Upstream gene4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732
Downstream geneLOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261J08.bB6Ng01-261J08.g
ACCGA066217GA066218
length1,1031,170
definitionB6Ng01-261J08.b B6Ng01-261J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,440,700 - 59,441,825)(59,547,769 - 59,548,946)
sequence
gaattcacatggagttcaattgaccttattctcactcccatccagtcagg
ttagctctgcttaccctcaaatattcaaaaacagaattataatcaggagg
aaagaaatcgttaaaaagcttttatctgtctggcttctgacatcatattt
tatttcttaataagtttatgtagaagcataaacatgaaagcatgaggaca
tgccaataatacttatgtcaacggtatcagagaaaaatataaatttcaaa
ggcaacaaagcctgagagatgttttcctgccctgatctccagtgtatcca
ggtaactctcatgagcacaagagagaactggttggggagaggggttgctc
tggaggaggactgttgctgtgctggaagagactgaatgtgatttggtgca
aactgagagaggacaccaaaccacactgcagtatctcagtttactgcaag
cagtataaacacagaggaatccccaacaaactaacaactgctgacaaaac
aaagtaaaaaccatggagcaaatagaattctaaggtgaccctcaaggttc
ccagtcactgggagatccacattatctgatatagtcagttaaacaataag
cttagtactctgaggagaaattttgtaggtgaaatgaaattttcaaacaa
ggggccttcagaccaggtggctagattagatagcctaaccaatcacatgg
tcccttaaatcaaggattttcatttttttgcacaaaagacaagcctgaga
ggggaaaaaaaatggaggccatgtgagatatctcaattgcttcttaaagt
aaaaggggtcacatggccacctttaaaaaagatactgcttcccaatcaag
taactggaaaaaaaaaaagcctaaaaacaaatttaaaggcagctacagtt
atgtacagctgaatcaccagcaatagggatttcacttggaagagaattat
gagttcaaagtgaatcttggcagcacagcaccagtgctcagtcagcttta
ctatgagtaatcctttttctcaaatataaaagaagactggtaggatgaaa
gaaaagagagatagagagcagagcaagaagaagtgggagatgaaagaaaa
gag
gaattctgtatttctcaagagaggaaaaagtatatgtcttggttctctaa
ctgctcaatagcatattttctacaactgcagttagaagaatttgaactta
accagaatttttattttcatacattcagatttttattattattggcattt
taaggctttgttaatcctaattttttacattttaactttttgaaatcttt
gatattataatataattacaaaatttctcttttacttttttccttatgaa
gcttcccaaatatttctcttcaaatttgtggttctttttcattaattgtt
gttacatgcattattgtatgtatatacctatatagagttctaaatataac
ctgcttagtctgcttaatgttgcttgtattcaggattgaccatccaatat
tggataaccaattggtgtgctctttgcttgggcagatcatttcggcattc
cttaattgtctgtgattctttgtgtagcattgaggcctgatggactatat
ccagtccacttacgtgtgtatattgccctttgcaacttgatctaaagcta
gatgtacttcttgctatacattttttaaagatttatttattattgtaaat
aagtacattgtagctttctaaagacccaccagaagagggcgtcagatccc
atctgatctctttacaggtagttgtgagccaccatatggttactgggatt
tgaatttaggactatggaagagcagtcagtgctcttaacttctgagctat
catgccagcccactataaattttttaaataagtgttttatattgccatga
atataaacacttatataaatacattcatatttaaaaattcataacaaact
ttgtttatattctaaacaaataatttcaatcttcattaaaataaggaatt
aaatctaactgttacatactcataaaggaggtagataaaaagagggtcaa
aatctgagattaacacctaagcagaaagcaatgtcaaattccttttactt
ataaatggaaaacaattcactttaaagcatgaaaacatttaaagtcttca
ttattataaacacacatatgactattatagtactcaagaaaatgaatcat
tgtagtaaactgtgggtaaggtcatgagagcaaaaacctcagttccgaaa
ttgcctagatgccataaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_59440700_59441825
seq2: B6Ng01-261J08.b_47_1149

seq1  GAATTCACATGGAGTTCAATTGACCTTATTCTCACTCCCATCCAGTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGAGTTCAATTGACCTTATTCTCACTCCCATCCAGTCAGG  50

seq1  TTAGCTCTGCTTACCCTCAAATATTCAAAAACAGAATTATAATCAGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCTGCTTACCCTCAAATATTCAAAAACAGAATTATAATCAGGAGG  100

seq1  AAAGAAATCGTTAAAAAGCTTTTATCTGTCTGGCTTCTGACATCATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATCGTTAAAAAGCTTTTATCTGTCTGGCTTCTGACATCATATTT  150

seq1  TATTTCTTAATAAGTTTATGTAGAAGCATAAACATGAAAGCATGAGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTAATAAGTTTATGTAGAAGCATAAACATGAAAGCATGAGGACA  200

seq1  TGCCAATAATACTTATGTCAACGGTATCAGAGAAAAATATAAATTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATAATACTTATGTCAACGGTATCAGAGAAAAATATAAATTTCAAA  250

seq1  GGCAACAAAGCCTGAGAGATGTTTTCCTGCCCTGATCTCCAGTGTATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAAAGCCTGAGAGATGTTTTCCTGCCCTGATCTCCAGTGTATCCA  300

seq1  GGTAACTCTCATGAGCACAAGAGAGAACTGGTTGGGGAGAGGGGTTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTCTCATGAGCACAAGAGAGAACTGGTTGGGGAGAGGGGTTGCTC  350

seq1  TGGAGGAGGACTGTTGCTGTGCTGGAAGAGACTGAATGTGATTTGGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGGACTGTTGCTGTGCTGGAAGAGACTGAATGTGATTTGGTGCA  400

seq1  AACTGAGAGAGGACACCAAACCACACTGCAGTATCTCAGTTTACTGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAGAGGACACCAAACCACACTGCAGTATCTCAGTTTACTGCAAG  450

seq1  CAGTATAAACACAGAGGAATCCCCAACAAACTAACAACTGCTGACAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAAACACAGAGGAATCCCCAACAAACTAACAACTGCTGACAAAAC  500

seq1  AAAGTAAAAACCATGGAGCAAATAGAATTCTAAGGTGACCCTCAAGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAAACCATGGAGCAAATAGAATTCTAAGGTGACCCTCAAGGTTC  550

seq1  CCAGTCACTGGGAGATCCACATTATCTGATATAGTCAGTTAAACAATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCACTGGGAGATCCACATTATCTGATATAGTCAGTTAAACAATAAG  600

seq1  CTTAGTACTCTGAGGAGAAATTTTGTAGGTGAAATGAAATTTTCAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTACTCTGAGGAGAAATTTTGTAGGTGAAATGAAATTTTCAAACAA  650

seq1  GGGGCCTTCAGACCAGGTGGCTAGATTAGATAGCCTAACCAATCACATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTTCAGACCAGGTGGCTAGATTAGATAGCCTAACCAATCACATGG  700

seq1  TCCCTTAAATCAAGGATTTTCATTTTTTTGCACAAAAGACAAGCCTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAAATCAAGGATTTTCATTTTTTTGCACAAAAGACAAGCCTGAGA  750

seq1  GGGGAAAAAAAATGGAGGCCATGTGAGATATCTCAATTGCTTCTTAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAAAAATGGAGGCCATGTGAGATATCTCAATTGCTTCTTAAAGT  800

seq1  AAAAGGGGTCACATGGCCACCTTTAAAAAAGATACTGCTTCCCAATCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGGTCACATGGCCACCTTTAAAAAAGATACTGCTTCCCAATCAAG  850

seq1  TAACTGG-AAAAAAAAAAGCCTAAAAACAAATTT-AAGGCAGCTACAGTT  898
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  TAACTGGAAAAAAAAAAAGCCTAAAAACAAATTTAAAGGCAGCTACAGTT  900

seq1  ATGTACAGCTGAATCACCAGCAATAGGGATTTCACTTGGAAGGAGAATTA  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGTACAGCTGAATCACCAGCAATAGGGATTTCACTTGGAA-GAGAATTA  949

seq1  TGAGTTCAAAGTGAATCTTGGCAGCACAGCACCAGTGCTTCAGGTCAGCT  998
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  TGAGTTCAAAGTGAATCTTGGCAGCACAGCACCAGTGC-TCA-GTCAGCT  997

seq1  TTACTATGAAGTAATCCTTTTTCTCAAAATATAAAAG-AGACTGGTAGGG  1047
      |||||||| |||||||||||||||| ||||||||||| ||||||||| ||
seq2  TTACTATG-AGTAATCCTTTTTCTC-AAATATAAAAGAAGACTGGTA-GG  1044

seq1  ATGAAAAGAAAAAGAGAGATAGGAGAAGCAGAGCAGGAGGGAAAGTGGGA  1097
      ||||||   |||||||||||| ||| ||||||||| || |  ||||||||
seq2  ATGAAA--GAAAAGAGAGATA-GAG-AGCAGAGCAAGAAG--AAGTGGGA  1088

seq1  GGAATGAGAGAAGAGGGAAAGAAAGAGAG  1126
      |  ||           |||||||| ||||
seq2  G--AT-----------GAAAGAAA-AGAG  1103

seq1: chr3_59547769_59548946
seq2: B6Ng01-261J08.g_66_1235 (reverse)

seq1  TATTTAAATTGCATCTAGCTA--TTCCGAACTGA-GTTTTTGCTTCTCAT  47
      |||||  || ||||||||  |  ||| ||||||| |||||||| ||||||
seq2  TATTT--ATGGCATCTAGGCAATTTCGGAACTGAGGTTTTTGC-TCTCAT  47

seq1  GACCTTA-CCACAGTTTTTACTACAATGATTTCATTTTTCCTTGAGTACT  96
      ||||||| ||||||  ||||||||||||| ||||||||  ||||||||||
seq2  GACCTTACCCACAG--TTTACTACAATGA-TTCATTTT--CTTGAGTACT  92

seq1  TAATAATAGTCATTATGTTTGTGTTTAT-ATAATGAAGACTTTAAATGTT  145
        |||||||||| ||||  ||||||||| |||||||||||||||||||||
seq2  --ATAATAGTCA-TATG--TGTGTTTATAATAATGAAGACTTTAAATGTT  137

seq1  TTCATGCTTTAAAGTGAATTGTTTTCCATTTATAAGTAAAAGGAATTTTG  195
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCATGCTTTAAAGTGAATTGTTTTCCATTTATAAGTAAAAGGAA-TTTG  186

seq1  ACATTGCTTTCTGCTTAGGTGTTAATCTCAGATTTTGACCCTCTTTTTAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTTTCTGCTTAGGTGTTAATCTCAGATTTTGACCCTCTTTTTAT  236

seq1  CTACCTCC-TTATGAGTATGTAACAGTTAGATTTAATTCCTTATTTTAAT  294
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCTTTATGAGTATGTAACAGTTAGATTTAATTCCTTATTTTAAT  286

seq1  GAAGATTGAAATTATTTGTTTAGAATATAAACAAAGTTTGTTATGAATTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTGAAATTATTTGTTTAGAATATAAACAAAGTTTGTTATGAATTT  336

seq1  TTAAATATGAATGTATTTATATAAGTGTTTATATTCATGGCAATATAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGAATGTATTTATATAAGTGTTTATATTCATGGCAATATAAAA  386

seq1  CACTTATTTAAAAAATTTATAGTGGGCTGGCATGATAGCTCAGAAGTTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTTAAAAAATTTATAGTGGGCTGGCATGATAGCTCAGAAGTTAA  436

seq1  GAGCACTGACTGCTCTTCCATAGTCCTAAATTCAAATCCCAGTAACCATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGACTGCTCTTCCATAGTCCTAAATTCAAATCCCAGTAACCATA  486

seq1  TGGTGGCTCACAACTACCTGTAAAGAGATCAGATGGGATCTGACGCCCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTCACAACTACCTGTAAAGAGATCAGATGGGATCTGACGCCCTC  536

seq1  TTCTGGTGGGTCTTTAGAAAGCTACAATGTACTTATTTACAATAATAAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTGGGTCTTTAGAAAGCTACAATGTACTTATTTACAATAATAAAT  586

seq1  AAATCTTTAAAAAATGTATAGCAAGAAGTACATCTAGCTTTAGATCAAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTAAAAAATGTATAGCAAGAAGTACATCTAGCTTTAGATCAAGT  636

seq1  TGCAAAGGGCAATATACACACGTAAGTGGACTGGATATAGTCCATCAGGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGGGCAATATACACACGTAAGTGGACTGGATATAGTCCATCAGGC  686

seq1  CTCAATGCTACACAAAGAATCACAGACAATTAAGGAATGCCGAAATGATC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGCTACACAAAGAATCACAGACAATTAAGGAATGCCGAAATGATC  736

seq1  TGCCCAAGCAAAGAGCACACCAATTGGTTATCCAATATTGGATGGTCAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGCAAAGAGCACACCAATTGGTTATCCAATATTGGATGGTCAAT  786

seq1  CCTGAATACAAGCAACATTAAGCAGACTAAGCAGGTTATATTTAGAACTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATACAAGCAACATTAAGCAGACTAAGCAGGTTATATTTAGAACTC  836

seq1  TATATAGGTATATACATACAATAATGCATGTAACAACAATTAATGAAAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGGTATATACATACAATAATGCATGTAACAACAATTAATGAAAAA  886

seq1  GAACCACAAATTTGAAGAGAAATATTTGGGAAGCTTCATAAGGAAAAAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACAAATTTGAAGAGAAATATTTGGGAAGCTTCATAAGGAAAAAAG  936

seq1  TAAAAGAGAAATTTTGTAATTATATTATAATATCAAAGATTTCAAAAAGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGAAATTTTGTAATTATATTATAATATCAAAGATTTCAAAAAGT  986

seq1  TAAAATGTAAAAAATTAGGATTAACAAAGCCTTAAAATGCCAATAATAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTAAAAAATTAGGATTAACAAAGCCTTAAAATGCCAATAATAAT  1036

seq1  AAAAATCTGAATGTATGAAAATAAAAATTCTGGTTAAGTTCAAATTCTTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTGAATGTATGAAAATAAAAATTCTGGTTAAGTTCAAATTCTTC  1086

seq1  TAACTGCAGTTGTAGAAAATATGCTATTGAGCAGTTAGAGAACCAAGACA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCAGTTGTAGAAAATATGCTATTGAGCAGTTAGAGAACCAAGACA  1136

seq1  TATACTTTTTCCTCTCTTGAGAAATACAGAATTC  1178
      ||||||||||||||||||||||||||||||||||
seq2  TATACTTTTTCCTCTCTTGAGAAATACAGAATTC  1170