BAC Information

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BAC

Clone NameB6Ng01-262D04
Chromosome7 (Build37)3 (Build37)
Map Location 135,635,061 - 135,635,11610,364,521 - 10,365,535
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1
Downstream geneBag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262D04.bB6Ng01-262D04.g
ACCGA066677GA066678
length1,0251,100
definitionB6Ng01-262D04.b B6Ng01-262D04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(135,635,061 - 135,635,116)(10,364,521 - 10,365,535)
sequence
gaattccaagcccatggttagctcaaggactttctaggacgttggaacac
tggtgaaggcttggctatgtcagaattcaatcttaaaaggcacttataat
aggataatactaaaagagagcacgtggatccatacaccagactaacgaag
gaatggaatattaatgtatgggttagagaggacgccagactccaggaggt
gagtttccatgaaactctttgcctcgtgagtagcttccaagcctctcagc
ctgtcaagctgactcaaccagagtgtgtggcagcctacttcatgcaaagt
tattataggtttaaaggttcgtttttttcccttgcatggtaaagggtttg
cttctagtgaactgataaccactggaaaattttgcctctaggtatggcta
atatagctttacattatgtctttgcttctatacaagaagttaagagtttg
aatctttcagtgtatattgtttcctaagtggaaagtattttattagctaa
tgcctctcaagggaagtttacttcaaatctttgctctcacacaatgagct
ttaaagttcttgggagtagctgttgctccagaaaagattcagaggcaata
tctttttaatatttagggtttagttatactataaaattgtggtacagaaa
atctaagaacagaaaattgatttgcttcaaaattttattttcaaaagctt
ccaggagatgttaaatggctaagacctcaccttaaactcaccacaggaga
acttaagtctttgttaggtgctattaagtgagacacaaattaactggcat
agaacaaaaggctttgaaaaagaatgaagaaagcttttatattatcaatg
atgatcaatggtaattaaatattagctgcttatttagttatggttattaa
atgtgcccacagcaattctttgacagaaatcttctctacagccaggtata
gcagctacattgcatattagaagcaagttggtgaattcttctacaatgga
gattctccacagatattaaagttac
gaattcaaggactgcctaggacattagtgaaggccaagaagcaaagttct
attttgcttaggtatttggcaagtcattgcttggagacactgagggaaag
cacacagatccactcaccgactaaagcaaggacattattggagcattagt
tatacaggatgccacggttccagaagactaagtttccgtgaactttttgc
ctctggactgcctccaggtatctagtcctgtcacaggtgtcacaactgga
gtggatatagcaatgttctatctatctatctatctatctatctatctatc
tatctatctatccatccatgtatctatctatctactatctatctagccat
tcatccatgtatctatctatctactatctatctatctatctatctatcta
tctatctatctatctatctatctacctatccatacacacacacacacaca
cacacacacacacacacacacagagagagagagagagagagagagagaga
gacacacacacatagttggtgagcctatttagcgttgtttgtttgtatat
atgtttagagctggcccactgggattggataatccccaccctggatgaag
tgcagcaggctgctaaaagctgctaagagaaggatggtctttccatggag
gagcccccgtaggatctagtactttcaaggtcatcacaacttctccttca
tttcatgttaattaattaaacaaatatttaatgagtttctgttcttagtg
gggaagttgtataaacaatgaaaagaacagaatcttactgtgtagctcag
ctagcttgcttggactacaggagcgcggtactagacttaactgggaagac
cgaagaagaaagatttaagcctgaagtatctcttccactctgattgcctg
tgtgaattcggcccagctaccaactgagtctgagtacttcatttgttgga
ataaataactattttcatcctaaaagagcagtcctgagcagcttcacaaa
gacacctttgaggctatgatgagccggcaggattttaaaaaagatgttta
caataaacatgtagaaaatagctgttcctgtcagttcttatcctacacgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_135635061_135635116
seq2: B6Ng01-262D04.b_603_657 (reverse)

seq1  CTAAGTATTGAAAAAGATATTGCCTCTGAATCTTTTCTGGAGCAACAACT  50
      |||| |||| ||||||||||||||||||||||||||||||||||||| ||
seq2  CTAAATATT-AAAAAGATATTGCCTCTGAATCTTTTCTGGAGCAACAGCT  49

seq1  ACTCCC  56
      ||||||
seq2  ACTCCC  55

seq1: chr3_10364521_10365535
seq2: B6Ng01-262D04.g_154_1165

seq1  ACTGAGGGAAAGCACACAGATCCACTCACCGACTAAAGCAAGGACATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGGAAAGCACACAGATCCACTCACCGACTAAAGCAAGGACATTAT  50

seq1  TGGAGCATTAGTTATACAGGATGCCACGGTTCCAGAAGACTAAGTTTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCATTAGTTATACAGGATGCCACGGTTCCAGAAGACTAAGTTTCCG  100

seq1  TGAACTTTTTGCCTCTGGACTGCCTCCAGGTATCTAGTCCTGTCACAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTTGCCTCTGGACTGCCTCCAGGTATCTAGTCCTGTCACAGGT  150

seq1  GTCACAACTGGAGTGGATATAGCAATGTTCTATCTATCTATCTATCTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAACTGGAGTGGATATAGCAATGTTCTATCTATCTATCTATCTATC  200

seq1  TATCTATCTATCTATCTATCTATCCATCCATGTATCTATCTATCTACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCCATCCATGTATCTATCTATCTACTAT  250

seq1  CTATCTAGCCATTCATCCATGTATCTATCTATCTACTATCTATCTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAGCCATTCATCCATGTATCTATCTATCTACTATCTATCTATCTA  300

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCTACCTATCCATACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTACCTATCCATACACA  350

seq1  CACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGA  400

seq1  GAGAGAGAGAGAGACACACACACATAGTTGGTGAGCCTATTTAGCGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGACACACACACATAGTTGGTGAGCCTATTTAGCGTTGT  450

seq1  TTGTTTGTATATATGTTTAGAGCTGGCCCACTGGGATTGGATAATCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTATATATGTTTAGAGCTGGCCCACTGGGATTGGATAATCCCCA  500

seq1  CCCTGGATGAAGTGCAGCAGGCTGCTAAAAGCTGCTAAGAGAAGGATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATGAAGTGCAGCAGGCTGCTAAAAGCTGCTAAGAGAAGGATGGT  550

seq1  CTTTCCATGGAGGAGCCCCCGTAGGATCTAGTACTTTCAAGGTCATCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATGGAGGAGCCCCCGTAGGATCTAGTACTTTCAAGGTCATCACA  600

seq1  ACTTCTCCTTCATTTCATGTTAATTAATTAAACAAATATTTAATGAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCTTCATTTCATGTTAATTAATTAAACAAATATTTAATGAGTTT  650

seq1  CTGTTCTTAGTGGGGAAGTTGTATAAACAATGAAAAGAACAGAATCTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTAGTGGGGAAGTTGTATAAACAATGAAAAGAACAGAATCTTAC  700

seq1  TGTGTAGCTCAGGCTAGCTTGCTTGGACTACAGGAGCGCGGTACTAGACT  750
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCTCA-GCTAGCTTGCTTGGACTACAGGAGCGCGGTACTAGACT  749

seq1  TAACTGGGAAGACCGAAGAAGAAAGATTTAAGCCTGAAGTATCTCTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGAAGACCGAAGAAGAAAGATTTAAGCCTGAAGTATCTCTTCCA  799

seq1  CTCTGATTGCCTGTGTGAATTCGGCCCAGCTACCAACTGAGTCTGAGGTA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCTGATTGCCTGTGTGAATTCGGCCCAGCTACCAACTGAGTCTGA-GTA  848

seq1  CTTCATTTGTTGGAATAAATAACTATTTTCATCCTAAAAAGAGCAGTCCT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTCATTTGTTGGAATAAATAACTATTTTCATCCT-AAAAGAGCAGTCCT  897

seq1  GAGGCAGCTTCACAAAGACACCTTTGAGGGCTTATGAATGAGCCGGCAGG  950
      || ||||||||||||||||||||||||||   |||| |||||||||||||
seq2  GA-GCAGCTTCACAAAGACACCTTTGAGG--CTATG-ATGAGCCGGCAGG  943

seq1  ATTTTAAAAAAGATGTTTACAATAAACATGTAG-AAATAGCTGTT-CTGT  998
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  ATTTTAAAAAAGATGTTTACAATAAACATGTAGAAAATAGCTGTTCCTGT  993

seq1  CAAGTC-TAT-CTACACGT  1015
      ||  || ||| ||||||||
seq2  CAGTTCTTATCCTACACGT  1012