BAC Information

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BAC

Clone NameB6Ng01-262L18
Chromosome3 (Build37)
Map Location 31,790,726 - 31,952,739
singlet/doubletdoublet
Overlap geneKcnmb2
Upstream geneGpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14, LOC625125
Downstream geneLOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262L18.bB6Ng01-262L18.g
ACCGA067072GA067073
length1,096859
definitionB6Ng01-262L18.b B6Ng01-262L18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,790,726 - 31,791,824)(31,951,888 - 31,952,739)
sequence
gaattccagtccaggttagggtagataagaaagtgtatcaacaaaacaaa
gtgaatgaaaacttaaagaacagctcataaactcatctgtaagctaacac
aatatgtgactgactaaaatactggaagaaacctgatccgatttgggttg
ggccacggttgcctttcttagcatccagatcagtcagcttcgggaaaaat
tatgtatttttctaatacaggagagggtgagtctcctttgatttatgaag
atgccatttgagactttcttctctatcaccatccctagttcatgctttct
gttcattttgactaatgcattccacaagagttctctgaaaacaaagaaag
ttccagattccacatgactcccagtcatcaagacgttttgttccctgaac
ttctgttttaaggatttaaggagctgaatagacaattccgagggaagaac
actggtgttcttccagaggacctagttggattactagtacctacatggca
gctcacaaccatctgtagctccaagtctatggaatctgatgctgtcttct
ggcctccacacgtaccaggtaaatgtggtacagacacctatgtgcataaa
ttaactgttttttttttattaaaaagtgaggtttgatgtcaaaagctgat
atgcacctactataaacctttatagaacagaaaatttcaagtttttgttc
ccaaagtctttaagcaagctgaattttcaagacaacacacagtgggttta
tgcatatttgagtcacatcagactcttggaatccgtaggtcttaaaggat
tcaccagaaacattttactggagggtcagcccagaccttgtctgtggttt
ttccttctcactcccataatggtatcaaaggtacttcatttcaggagcta
aaaggaaaaggccaagttagctcttttgctcttttgtctcctctttatcc
tcccttgttacatgacacctgcctctacaggaatcaagcaaagacagtaa
agtggactgggtaaggagacagagcatccttctcttcacttcatgaccct
gacgagtctaacttccaagtcaggagtgagctgaattgattccagc
gaattcctgcggggagggccttcagctcttgctatgtaggttagccaggg
ctcagtgtcacattcagctaggcaaatgctgtgctttaagaacctgattt
tagagtatttcaatacaagaataattttccctctcccttttcttccatct
tttccttctctcccactttttttttctgttgtggtgcgcgtgcatgcgtg
cgtgcgtgcgtgtgtgtgtgtgtgtgtgtttgatgtgtagactgtgtagg
agactgttgctgtcttgctttattgctctctgccctacgttcttgagaca
gaatctctgactgaacctggaactcatagtttcagacagggctgtctgtc
ttgaaaccccagcaatcctcttgtctctggccctgccatcaggactgatg
ctaacaggcacaacttggttgctggggatggaactcaggtcctcatgttt
atacagtgaactttcctctctcctgacccctctcctcatggtgagggtgt
ggttagtgagtggcaagagctgagctgttgcatctcaagggccatttgct
gactgcgtcttttagggtctcttctccacaacacaggcaggggatttaga
atgctgtgttctgtaaggagaggcaacatgatagattgtaggctcccatg
atgtgttagtatgacgtccacactttggacatactcacctatttattaag
agtttaagtttaaaatagaacattaagggaagttgatatttttagatggt
gatgtgaaattagttcacggaaaaatcaatactaaaataaaaactaaaac
gcaatgttaaattttgtcagctaggttaattggtttctggtgtttcctga
accggttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_31790726_31791824
seq2: B6Ng01-262L18.b_49_1144

seq1  GAATTCCAGTCCAGGTTAGGGTAGATAAGAAAGTGTATCAACAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCAGGTTAGGGTAGATAAGAAAGTGTATCAACAAAACAAA  50

seq1  GTGAATGAAAACTTAAAGAACAGCTCATAAACTCATCTGTAAGCTAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGAAAACTTAAAGAACAGCTCATAAACTCATCTGTAAGCTAACAC  100

seq1  AATATGTGACTGACTAAAATACTGGAAGAAACCTGATCCGATTTGGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTGACTGACTAAAATACTGGAAGAAACCTGATCCGATTTGGGTTG  150

seq1  GGCCACGGTTGCCTTTCTTAGCATCCAGATCAGTCAGCTTCGGGAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACGGTTGCCTTTCTTAGCATCCAGATCAGTCAGCTTCGGGAAAAAT  200

seq1  TATGTATTTTTCTAATACAGGAGAGGGTGAGTCTCCTTTGATTTATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTTTTCTAATACAGGAGAGGGTGAGTCTCCTTTGATTTATGAAG  250

seq1  ATGCCATTTGAGACTTTCTTCTCTATCACCATCCCTAGTTCATGCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTTGAGACTTTCTTCTCTATCACCATCCCTAGTTCATGCTTTCT  300

seq1  GTTCATTTTGACTAATGCATTCCACAAGAGTTCTCTGAAAACAAAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTTGACTAATGCATTCCACAAGAGTTCTCTGAAAACAAAGAAAG  350

seq1  TTCCAGATTCCACATGACTCCCAGTCATCAAGACGTTTTGTTCCCTGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATTCCACATGACTCCCAGTCATCAAGACGTTTTGTTCCCTGAAC  400

seq1  TTCTGTTTTAAGGATTTAAGGAGCTGAATAGACAATTCCGAGGGAAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTAAGGATTTAAGGAGCTGAATAGACAATTCCGAGGGAAGAAC  450

seq1  ACTGGTGTTCTTCCAGAGGACCTAGTTGGATTACTAGTACCTACATGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGTTCTTCCAGAGGACCTAGTTGGATTACTAGTACCTACATGGCA  500

seq1  GCTCACAACCATCTGTAGCTCCAAGTCTATGGAATCTGATGCTGTCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAACCATCTGTAGCTCCAAGTCTATGGAATCTGATGCTGTCTTCT  550

seq1  GGCCTCCACACGTACCAGGTAAATGTGGTACAGACACCTATGTGCATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCACACGTACCAGGTAAATGTGGTACAGACACCTATGTGCATAAA  600

seq1  TTAACTGTTTTTTTTTTATTAAAAAGTGAGGTTTGATGTCAAAAGCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTTTTTTTTTTATTAAAAAGTGAGGTTTGATGTCAAAAGCTGAT  650

seq1  ATGCACCTACTATAAACCTTTATAGAACAGAAAATTTCAAGTTTTTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTACTATAAACCTTTATAGAACAGAAAATTTCAAGTTTTTGTTC  700

seq1  CCAAAGTCTTTAAGCAAGCTGAATTTTCAAGACAACACACAGTGGGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCTTTAAGCAAGCTGAATTTTCAAGACAACACACAGTGGGTTTA  750

seq1  TGCATATTTGAGTCACATCAGACTCTTGGAATCCGTAGGTCTTAAAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTTGAGTCACATCAGACTCTTGGAATCCGTAGGTCTTAAAGGAT  800

seq1  TCACCAGAAACATTTTACTGGAGGGTCAGCCCAGACCTTGTCTGTGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGAAACATTTTACTGGAGGGTCAGCCCAGACCTTGTCTGTGGTTT  850

seq1  TTCCTTCTCACTCCCATAATGGTATCAAAGGTACTTCATTTCAGGAGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCACTCCCATAATGGTATCAAAGGTACTTCATTTCAGGAGCTA  900

seq1  AAAGGAAAAGGCCAAGTTAGCTCTTTTGCTCTTTTGTCTCCTCTTTATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAGGCCAAGTTAGCTCTTTTGCTCTTTTGTCTCCTCTTTATCC  950

seq1  TCCCTTGTTACATGACACCTGCCTCTACAGGAATCAAGCAAAGACAGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTTACATGACACCTGCCTCTACAGGAATCAAGCAAAGACAGTAA  1000

seq1  AGTGGACTGGGTAAGGAGGACAGAGCATCCTCCTCTTCCACTTCAATGAC  1050
      ||||||||||||||||| ||||||||||||| ||||| |||||| |||||
seq2  AGTGGACTGGGTAAGGA-GACAGAGCATCCTTCTCTT-CACTTC-ATGAC  1047

seq1  CCTGACGAAGTCTAAC-TCCAAGTCAGGAGTGAGGCTGAAATGA-TCCAG  1098
      ||||||| |||||||| |||||||||||||||| |||||| ||| |||||
seq2  CCTGACG-AGTCTAACTTCCAAGTCAGGAGTGA-GCTGAATTGATTCCAG  1095

seq1  C  1099
      |
seq2  C  1096

seq1: chr3_31951888_31952739
seq2: B6Ng01-262L18.g_69_927 (reverse)

seq1  TTAA-CTGTTCA-GAAACA-CAG-AACCAATTAAACTAGCTGACATAATT  46
      |||| | ||||| |||||| ||| |||||||||| |||||||||| ||||
seq2  TTAACCGGTTCAGGAAACACCAGAAACCAATTAACCTAGCTGACAAAATT  50

seq1  TAACACTGCGTTTTAGTTTTTA-TTTAGTATTGA-TTTTCCGTGAACTAA  94
      ||||| |||||||||||||||| ||||||||||| |||||||||||||||
seq2  TAACATTGCGTTTTAGTTTTTATTTTAGTATTGATTTTTCCGTGAACTAA  100

seq1  TTTCACATCACCATCT-AAAATATCAACTTCCCTTAATGTTCTATTTTAA  143
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTCACATCACCATCTAAAAATATCAACTTCCCTTAATGTTCTATTTTAA  150

seq1  ACTTAAACTCTTAATAAATAGGTGAGTATGTCCAAAGTGTGGACGTCATA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACTCTTAATAAATAGGTGAGTATGTCCAAAGTGTGGACGTCATA  200

seq1  CTAACACATCATGGGAGCCTACAATCTATCATGTTGCCTCTCCTTACAGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACATCATGGGAGCCTACAATCTATCATGTTGCCTCTCCTTACAGA  250

seq1  ACACAGCATTCTAAATCCCCTGCCTGTGTTGTGGAGAAGAGACCCTAAAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCATTCTAAATCCCCTGCCTGTGTTGTGGAGAAGAGACCCTAAAA  300

seq1  GACGCAGTCAGCAAATGGCCCTTGAGATGCAACAGCTCAGCTCTTGCCAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCAGTCAGCAAATGGCCCTTGAGATGCAACAGCTCAGCTCTTGCCAC  350

seq1  TCACTAACCACACCCTCACCATGAGGAGAGGGGTCAGGAGAGAGGAAAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAACCACACCCTCACCATGAGGAGAGGGGTCAGGAGAGAGGAAAGT  400

seq1  TCACTGTATAAACATGAGGACCTGAGTTCCATCCCCAGCAACCAAGTTGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTATAAACATGAGGACCTGAGTTCCATCCCCAGCAACCAAGTTGT  450

seq1  GCCTGTTAGCATCAGTCCTGATGGCAGGGCCAGAGACAAGAGGATTGCTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTAGCATCAGTCCTGATGGCAGGGCCAGAGACAAGAGGATTGCTG  500

seq1  GGGTTTCAAGACAGACAGCCCTGTCTGAAACTATGAGTTCCAGGTTCAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCAAGACAGACAGCCCTGTCTGAAACTATGAGTTCCAGGTTCAGT  550

seq1  CAGAGATTCTGTCTCAAGAACGTAGGGCAGAGAGCAATAAAGCAAGACAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTCTGTCTCAAGAACGTAGGGCAGAGAGCAATAAAGCAAGACAG  600

seq1  CAACAGTCTCCTACACAGTCTACACATCAAACACACACACACACACACAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTCTCCTACACAGTCTACACATCAAACACACACACACACACACAC  650

seq1  GCACGCACGCACGCATGCACGCGCACCACAACAGAAAAAAAAAGTGGGAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCACGCACGCATGCACGCGCACCACAACAGAAAAAAAAAGTGGGAG  700

seq1  AGAAGGAAAAGATGGAAGAAAAGGGAGAGGGAAAATTATTCTTGTATTGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAAAGATGGAAGAAAAGGGAGAGGGAAAATTATTCTTGTATTGA  750

seq1  AATACTCTAAAATCAGGTTCTTAAAGCACAGCATTTGCCTAGCTGAATGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCTAAAATCAGGTTCTTAAAGCACAGCATTTGCCTAGCTGAATGT  800

seq1  GACACTGAGCCCTGGCTAACCTACATAGCAAGAGCTGAAGGCCCTCCCCG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAGCCCTGGCTAACCTACATAGCAAGAGCTGAAGGCCCTCCCCG  850

seq1  CAGGAATTC  852
      |||||||||
seq2  CAGGAATTC  859