BAC Information

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BAC

Clone NameB6Ng01-263C12
Chromosome17 (Build37)3 (Build37)
Map Location 75,372,712 - 75,372,87220,032,103 - 20,033,219
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSrd5a2, Memo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27
Downstream geneLOC100043672, Ltbp1, EG621988, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263C12.bB6Ng01-263C12.g
ACCGA067394GA067395
length9991,098
definitionB6Ng01-263C12.b B6Ng01-263C12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,372,712 - 75,372,872)(20,032,103 - 20,033,219)
sequence
gaattctttctgtatccctgctgggcagtggtggcgcacgcctttaatcc
cagtgcttgggaggcagatgtaggcagatttctgagtttgaagccagcct
ggtctagagtgagttccagaacagccagggctacacagagaaaccctgtc
tttaaaaaaaaaaaaaagacactagatctttatccctttttaaattgagt
tgttttcttgatatttagattcttgagttccttttacattttgtgtacat
ttgtctattagttctcattcagatgtgtaattggtaaaaatcttttccca
ttctctagtctgccattttgccctagtaatagtgtcctttggcatgcaga
aactgctcggtttcatgagtcatatttattaattgctcattctagtgctt
acatgctaacatcattctgttcaaagaatcttttcctatgccaatgagtt
caaggctattctccactttttcttctgccaagttcaatgtgtctggtttt
atgttaaggtcttgatccatctggagttgagttttgagcagggtgataat
tatggatctatttgtatatttctacatgctgtcatcttctttaaccagca
ccattagttaaagatgctatgcgtgtttccagtgtgtattgctggcttct
ttatttaaaaaaaaaaaaatcaggtgttcataggtacatggatttgtctg
ggtgttcgatttgattatattgaccaatataaaatccatattttttatgc
attctacaatagtgccccaattttttgagaaaattcatgagaaaagtttt
acatccaacctgtaattacctctgaccctggatattataaaagttttact
tatatacctggcagcactgacttctaagggtataatcttgggtcctagac
tattctcttgatgagtatttatcccaaaggagaagatattcagaaaaata
accaggaaaaaatacatcctctgacactattaactgtgatgacagattt
gaattccaccttttgctcatttgtaaaataaaaaagaatgatatgaaaat
gaattaagagtaaggtcctaaataaaagaaaaatgctttaagtcttttaa
gacttttaggggtatggaaatttcattcagtagggtacccggcatgcatg
taattctgggctcaagccttatcattgcaaatatacaaacagataaatga
acaaataatctcagcctcaatactagtgtagatggacagtttacatttcc
cccagttaaggctgcaagtagatagaaggtatatcacctaacagaaagca
aaaaaaaaaaaacaaaaaaaaaaacaaaaaaaaaaaacaaaaaaaaaaaa
aaacaaaaaaaaaaaccaccccacaaacaaacaaacaaataaaaaaaacc
caccacagtggctaggaagagggcataatactcaatcaactccagcttat
gacaggaataatgaggtgttttcctgacctacccagggtttatccacaaa
atcaccagccagaaacttaaaaaagaagtttggttcaattgtttctaaat
tatcaagagccatttattctgacccactaaggggatttgtatcagcttgc
atatatttcttaaaataagtattctaattttaacttgatagaatctctaa
ggagtcatcatccagatcacaagacatagtttgaactgaagccagcaaca
acactgcttatgttagctgttgaaatagtccttgtgacctgatgttacca
caagatcagatggacatcgtatggctgctcagtggttagtgacacagagg
aggctgcaggcatagtgagaacagaaaggaactaatccaggacaacacac
acagaagcaatttaatcagtcaacttttaatatgcaatgttctatgagac
actaagaaagagaaagagtacttgcatggtactctctggaatgtgtcaag
gcactgggtatctctgccacccagtatggagtatgctctctgtctcatca
cactcactcatatactggtcagatcacaatgtgagaacagtgtccacagg
ctcgtcccgctagtgatgatacctctctaacatcatccagtctgtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_75372712_75372872
seq2: B6Ng01-263C12.b_62_712 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TTTTTTTTTTTTAAATAAAGAAGCCAGCAATACACACTGGAAACACGCAT  50

seq1  --------------------------------------------------  0
                                                        
seq2  AGCATCTTTAACTAATGGTGCTGGTTAAAGAAGATGACAGCATGTAGAAA  100

seq1  --------------------------------------------------  0
                                                        
seq2  TATACAAATAGATCCATAATTATCACCCTGCTCAAAACTCAACTCCAGAT  150

seq1  --------------------------------------------------  0
                                                        
seq2  GGATCAAGACCTTAACATAAAACCAGACACATTGAACTTGGCAGAAGAAA  200

seq1  --------------------------------------------------  0
                                                        
seq2  AAGTGGAGAATAGCCTTGAACTCATTGGCATAGGAAAAGATTCTTTGAAC  250

seq1  --------------------------------------------------  0
                                                        
seq2  AGAATGATGTTAGCATGTAAGCACTAGAATGAGCAATTAATAAATATGAC  300

seq1  --------------------------------------------------  0
                                                        
seq2  TCATGAAACCGAGCAGTTTCTGCATGCCAAAGGACACTATTACTAGGGCA  350

seq1  --------------------------------------------------  0
                                                        
seq2  AAATGGCAGACTAGAGAATGGGAAAAGATTTTTACCAATTACACATCTGA  400

seq1  --------------------------------------------------  0
                                                        
seq2  ATGAGAACTAATAGACAAATGTACACAAAATGTAAAAGGAACTCAAGAAT  450

seq1  -------------------------------------------------T  1
                                                       |
seq2  CTAAATATCAAGAAAACAACTCAATTTAAAAAGGGATAAAGATCTAGTGT  500

seq1  TTTTTTTTTTTAAATGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTG  51
       |||||||||       |||||  ||||||||||||||||||||||||||
seq2  CTTTTTTTTT-------TTTTTAAAGACAGGGTTTCTCTGTGTAGCCCTG  543

seq1  GCTGCCCTGGAACTCACTCTGTAGACCAGGCTGACCTCGAACTCAGAAAT  101
      ||||  |||||||||||||  |||||||||||| | || |||||||||||
seq2  GCTGTTCTGGAACTCACTC--TAGACCAGGCTGGCTTCAAACTCAGAAAT  591

seq1  CCGCCTGCCTCTGCCTCCCAAGTCCTGGGATTAAAGGTGTGCACCACCAC  151
      | |||| | |||||||||||||  ||||||||||||| |||| |||||||
seq2  CTGCCTACATCTGCCTCCCAAGCACTGGGATTAAAGGCGTGCGCCACCAC  641

seq1  TGCCCGGCAG  161
      ||||| ||||
seq2  TGCCCAGCAG  651

seq1: chr3_20032103_20033219
seq2: B6Ng01-263C12.g_68_1165

seq1  GAATTCCACCTTTTGCTCATTTGTAAAATAAAAAAGAATGATATGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTTTTGCTCATTTGTAAAATAAAAAAGAATGATATGAAAAT  50

seq1  GAATTAAGAGTAAGGTCCTAAATAAAAGAAAAATGCTTTAAGTCTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAGAGTAAGGTCCTAAATAAAAGAAAAATGCTTTAAGTCTTTTAA  100

seq1  GACTTTTAGGGGTATGGAAATTTCATTCAGTAGGGTACCCGGCATGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTAGGGGTATGGAAATTTCATTCAGTAGGGTACCCGGCATGCATG  150

seq1  TAATTCTGGGCTCAAGCCTTATCATTGCAAATATACAAACAGATAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTGGGCTCAAGCCTTATCATTGCAAATATACAAACAGATAAATGA  200

seq1  ACAAATAATCTCAGCCTCAATACTAGTGTAGATGGACAGTTTACATTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAATCTCAGCCTCAATACTAGTGTAGATGGACAGTTTACATTTCC  250

seq1  CCCAGTTAAGGCTGCAAGTAGATAGAAGGTATATCACCTAACAGAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTAAGGCTGCAAGTAGATAGAAGGTATATCACCTAACAGAAAGCA  300

seq1  AAAAAAAAAAAACAAAAAAAAAAACAAAAAAAAAAACCAAAAAAAAAAAA  350
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAAAAAAAAAACAAAAAAAAAAACAAAAAAAAAAAACAAAAAAAAAAAA  350

seq1  AACCAAAAAAAAAAACCACCCCACAAACAAACAAACAAATAAAAAAAACC  400
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAAAAAACCACCCCACAAACAAACAAACAAATAAAAAAAACC  400

seq1  CACCACAGTGGCTAGGAAGAGGGCATAATACTCAATCAACTCCAGCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAGTGGCTAGGAAGAGGGCATAATACTCAATCAACTCCAGCTTAT  450

seq1  GACAGGAATAATGAGGTGTTTTCCTGACCTACCCAGGGTTTATCCACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAATAATGAGGTGTTTTCCTGACCTACCCAGGGTTTATCCACAAA  500

seq1  ATCACCAGCCAGAAACTTAAAAAAGAAGTTTGGTTCAATTGTTTCTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAGCCAGAAACTTAAAAAAGAAGTTTGGTTCAATTGTTTCTAAAT  550

seq1  TATCAAGAGCCATTTATTCTGACCCACTAAGGGGATTTGTATCAGCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGAGCCATTTATTCTGACCCACTAAGGGGATTTGTATCAGCTTGC  600

seq1  ATATATTTCTTAAAATAAGTATTCTAATTTTAACTTGATAGAATCTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTCTTAAAATAAGTATTCTAATTTTAACTTGATAGAATCTCTAA  650

seq1  GGAGTCATCATCCAGATCACAAGACATAGTTTGAACTGAAGCCAGCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCATCATCCAGATCACAAGACATAGTTTGAACTGAAGCCAGCAACA  700

seq1  ACACTGCTTATGTTAGCTGTTGAAATAGTCCTTGTGACCTGATGTTACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCTTATGTTAGCTGTTGAAATAGTCCTTGTGACCTGATGTTACCA  750

seq1  CAAGATCAGATGGACATCGTATGGCTGCTCAGTGGTTAGTGACACAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCAGATGGACATCGTATGGCTGCTCAGTGGTTAGTGACACAGAGG  800

seq1  AGGCTGCAGGCATAGTGAGAACAGAAAGGAACTAATCCAGGACAACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCAGGCATAGTGAGAACAGAAAGGAACTAATCCAGGACAACACAC  850

seq1  ACAGAAGCAATTTAATCAGTCAACTTTT-ATATGCAATGTTCTATGAGAC  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACAGAAGCAATTTAATCAGTCAACTTTTAATATGCAATGTTCTATGAGAC  900

seq1  ACTAAGAAAGAGAAAGAAGTACTTGCATGGTACTCCTCTGGAAATGTGTC  949
      |||||||||||||||| ||||||||||||||||| |||||| ||||||| 
seq2  ACTAAGAAAGAGAAAG-AGTACTTGCATGGTACT-CTCTGG-AATGTGT-  946

seq1  CAAGGCACTGGGTATCCTCTTGCCCACCCCAGTATGGAGTATGCTCTCTG  999
      ||||||||||||||| ||| ||||   |||||||||||||||||||||||
seq2  CAAGGCACTGGGTAT-CTC-TGCC--ACCCAGTATGGAGTATGCTCTCTG  992

seq1  TCTCATCACCACTCACTCATATACCTGTTCAGATTCACACATGTTGAG-A  1048
      |||||||| |||||||||||||| ||| ||||| ||||| ||| |||| |
seq2  TCTCATCA-CACTCACTCATATA-CTGGTCAGA-TCACA-ATG-TGAGAA  1037

seq1  CAGTGTCACAACAGCTCGTCCCCGCTAGTGATGAATACCTCTCTCACCCA  1098
      ||||||| ||   |||||| ||||||||||||| |||||||||| |  ||
seq2  CAGTGTC-CACAGGCTCGT-CCCGCTAGTGATG-ATACCTCTCTAA--CA  1082

seq1  TCCATCCACAGTCTGTCAG  1117
      | ||||  |||||||||||
seq2  T-CATC--CAGTCTGTCAG  1098