BAC Information

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BAC

Clone NameB6Ng01-263C15
Chromosome3 (Build37)
Map Location 113,716,621 - 113,759,728
singlet/doubletdoublet
Overlap geneCol11a1
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263C15.bB6Ng01-263C15.g
ACCGA067400GA067401
length1,2071,093
definitionB6Ng01-263C15.b B6Ng01-263C15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,758,520 - 113,759,728)(113,716,621 - 113,717,727)
sequence
gaattctcatttctgcaatcaatgatctttttctacattattattatttc
aaaagatttttatactattggatcaaattgtctctcatagaaaaaaatgt
tcccagaaattcatcaatatcatatgaaaaatttccaggtaaagtcttac
aaaatctctaataccagaattctgagcatgtgttaaaatggctagctgta
tgtctcagttatcattttactgctatgaagaaacacttacaacaaaaagc
agttagttgtttatagtttcagacacttagtccgtgatcgttatgcctgg
tagcatggggtcagacagatacggcactggaacagtatttaaacttcaca
tctgatccgtaaggtggaagtagaaagagtgaaactagttctggtgtggg
cttttgaagcctcaaagccttctcccagtagcacacctacaaggccacac
ctactccaacaaggccatacttccttaagccacccaaaacagttacacta
actgggaaacaaccattcaaatatttagaggggatattaatatgcaaatt
accatactgtattaaacttcacgtaagaataatgtgtaaaacattcaaaa
cgaacctttactaaaaaaaaaaaaaaaaatgtttctttgaaagtaaatag
agtgatgttaggacaatatccactgagtttttcctaaactacaagactgt
aaaattatcaatcattagttgtttgaagttccctccaatcttaaccccat
gaatatgggatagtcataaaatactgacttcccatattctattgaagaaa
taatgaattgtttaatttctaaccataagcctatttctgttaccagatta
aatcagtgtagcagttggatattttcatcatgtcattggtgattgcaact
tctttgttttttgtttatgaaaatttatacttcatactgtaacttgatat
tatgtagcacatagaaacactattaagcaaataaggataaagttttatta
tacagcagtaatagcataggagcaaagaataattacctacctggaaatag
ctgctttgttggggcgctgattggtgcttcctccgtaactctattaggca
ccatctggatctttagaattctttttcttggtttgtggcaatcctgtgtg
ggttttagaattccactggaaatgtgaaaatctaatgctttgagttatat
atcaact

gaattcatctcaagcctaatatgaaaccttcagtaggagaaaggcatctg
ggtaacatcagggtttctagtctactgctaccctacctagcagttgttgc
tttctggcttcaaagatagaaatgaaggagagaaaagacgctgaaaatgt
tttatataatctacagtcttcactcttgccctcgtgatcagtaatcgact
tattataattggcatttgaaagtgggatgctttgtaacacaaatctaaat
aaaatatgtgatattgacttgagctgagatggaaggacgacagggccatt
atataactcggagcaacggtaaggaaattgttgtgggaaggtggagaaag
gaaaccctatgttgtgatgtggaaaacagagagaacatcatgtgtaatga
gaaacaatataagtagatacacagtgtcttctactttcatacttgagtga
acacatgctgttgcaggaaattttaaaagacatctcgttcctacagttgc
atctctgcccaggccacttggctggccatgcactggcgggcaatggccga
cctgtttttttttttttttctcatggagactgattcaaaactccagtctc
tccatccagctcactaggttcctgctggcaagttgttaccatgccaaccc
ggtgcttcaaatcccccatggcctttgtggtgcacatctggcaaacccac
actttgttgacgtaccttcttctcttgaacctagacaagcctctgtgtga
aggaaaacacaacacaaatgaagttcagagacaatggtaactcaatatct
gggcacgacaactaaaacctaatcttgtaagctttattaaaatctgattc
ttctggtggcaaatctttgcagatttgccatgataccagaaagctctagc
aactacatcttccccatatgctgtccccagaagtctcatgattggttcac
agaagccacctgagtatgtgactcattcacattccagacacctcctccag
gcgagccagactacataggataaagcagcacagagcatcacaacacatgc
cacatagagtgtgaaccagctgtccatcccactcacaccaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113758520_113759728
seq2: B6Ng01-263C15.b_44_1250 (reverse)

seq1  AGTTGATAT---ACTAAAAGCATTAGATTTTCACAATTCTCCAGTGGGAA  47
      |||||||||   ||| |||||||||||||||||||  | |||||| ||||
seq2  AGTTGATATATAACTCAAAGCATTAGATTTTCACA--TTTCCAGT-GGAA  47

seq1  TATCTAAAAC---AACAGGATTTTGCACAAAC----AGAAAGAATTCTAA  90
      | ||||||||    |||||| ||  |||||||    | ||||||||||||
seq2  T-TCTAAAACCCACACAGGA-TTGCCACAAACCAAGAAAAAGAATTCTAA  95

seq1  AGATCCAGATGTTG-CTTATAGAGTTACGGAGGAAGCACAAATCAGCGCC  139
      ||||||||||| || || ||||||||||||||||||||| ||||||||||
seq2  AGATCCAGATGGTGCCTAATAGAGTTACGGAGGAAGCACCAATCAGCGCC  145

seq1  CCAACAAAGCAGCTATTTCCAGGTAGGTTAATTTTATCTTTGCTCCTATT  189
      ||||||||||||||||||||||||||| ||||| | |||||||||||| |
seq2  CCAACAAAGCAGCTATTTCCAGGTAGG-TAATTAT-TCTTTGCTCCTA-T  192

seq1  GCTATTACTGCTGTTATTAATAAAACTTTTATTCTTTATTTGCTTAATAG  239
      ||||||||||||||   ||||||||||||   || |||||||||||||||
seq2  GCTATTACTGCTGT--ATAATAAAACTTT--ATCCTTATTTGCTTAATAG  238

seq1  TGTTTCTATTGTGCTACATAATATCAAGTTACAGTATGAAGTATAAATTT  289
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTA-TGTGCTACATAATATCAAGTTACAGTATGAAGTATAAATTT  287

seq1  TCATAAACAAAAAACAAAGAAGTTGCAATCACCAATGACATGATGAAAAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACAAAAAACAAAGAAGTTGCAATCACCAATGACATGATGAAAAT  337

seq1  ATCCAACTGCTACACTGATTTAATCTGGTAACAGAAATAGGCTTATGGTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACTGCTACACTGATTTAATCTGGTAACAGAAATAGGCTTATGGTT  387

seq1  AGAAATTAAACAATTCATTATTTCTTCAATAGAATATGGGAAGTCAGTAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAAACAATTCATTATTTCTTCAATAGAATATGGGAAGTCAGTAT  437

seq1  TTTATGACTATCCCATATTCATGGGGTTAAGATTGGAGGGAACTTCAAAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACTATCCCATATTCATGGGGTTAAGATTGGAGGGAACTTCAAAC  487

seq1  AACTAATGATTGATAATTTTACAGTCTTGTAGTTTAGGAAAAACTCAGTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGATTGATAATTTTACAGTCTTGTAGTTTAGGAAAAACTCAGTG  537

seq1  GATATTGTCCTAACATCACTCTATTTACTTTCAAAGAAACATTTTTTTTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTCCTAACATCACTCTATTTACTTTCAAAGAAACATTTTTTTTT  587

seq1  TTTTTTTTAGTAAAGGTTCGTTTTGAATGTTTTACACATTATTCTTACGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAGTAAAGGTTCGTTTTGAATGTTTTACACATTATTCTTACGT  637

seq1  GAAGTTTAATACAGTATGGTAATTTGCATATTAATATCCCCTCTAAATAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTAATACAGTATGGTAATTTGCATATTAATATCCCCTCTAAATAT  687

seq1  TTGAATGGTTGTTTCCCAGTTAGTGTAACTGTTTTGGGTGGCTTAAGGAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGGTTGTTTCCCAGTTAGTGTAACTGTTTTGGGTGGCTTAAGGAA  737

seq1  GTATGGCCTTGTTGGAGTAGGTGTGGCCTTGTAGGTGTGCTACTGGGAGA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCCTTGTTGGAGTAGGTGTGGCCTTGTAGGTGTGCTACTGGGAGA  787

seq1  AGGCTTTGAGGCTTCAAAAGCCCACACCAGAACTAGTTTCACTCTTTCTA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGAGGCTTCAAAAGCCCACACCAGAACTAGTTTCACTCTTTCTA  837

seq1  CTTCCACCTTACGGATCAGATGTGAAGTTTAAATACTGTTCCAGTGCCGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCTTACGGATCAGATGTGAAGTTTAAATACTGTTCCAGTGCCGT  887

seq1  ATCTGTCTGACCCCATGCTACCAGGCATAACGATCACGGACTAAGTGTCT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTGACCCCATGCTACCAGGCATAACGATCACGGACTAAGTGTCT  937

seq1  GAAACTATAAACAACTAACTGCTTTTTGTTGTAAGTGTTTCTTCATAGCA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTATAAACAACTAACTGCTTTTTGTTGTAAGTGTTTCTTCATAGCA  987

seq1  GTAAAATGATAACTGAGACATACAGCTAGCCATTTTAACACATGCTCAGA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGATAACTGAGACATACAGCTAGCCATTTTAACACATGCTCAGA  1037

seq1  ATTCTGGTATTAGAGATTTTGTAAGACTTTACCTGGAAATTTTTCATATG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGTATTAGAGATTTTGTAAGACTTTACCTGGAAATTTTTCATATG  1087

seq1  ATATTGATGAATTTCTGGGAACATTTTTTTCTATGAGAGACAATTTGATC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATGAATTTCTGGGAACATTTTTTTCTATGAGAGACAATTTGATC  1137

seq1  CAATAGTATAAAAATCTTTTGAAATAATAATAATGTAGAAAAAGATCATT  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTATAAAAATCTTTTGAAATAATAATAATGTAGAAAAAGATCATT  1187

seq1  GATTGCAGAAATGAGAATTC  1209
      ||||||||||||||||||||
seq2  GATTGCAGAAATGAGAATTC  1207


seq1: chr3_113716621_113717727
seq2: B6Ng01-263C15.g_64_1156

seq1  GAATTCATCTCAAGCCTAATATGAAACCTTCAGTAGGAGAAAGGCATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCAAGCCTAATATGAAACCTTCAGTAGGAGAAAGGCATCTG  50

seq1  GGTAACATCAGGGTTTCTAGTCTACTGCTACCCTACCTAGCAGTTGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACATCAGGGTTTCTAGTCTACTGCTACCCTACCTAGCAGTTGTTGC  100

seq1  TTTCTGGCTTCAAAGATAGAAATGAAGGAGAGAAAAGACGCTGAAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGCTTCAAAGATAGAAATGAAGGAGAGAAAAGACGCTGAAAATGT  150

seq1  TTTATATAATCTACAGTCTTCACTCTTGCCCTCGTGATCAGTAATCGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAATCTACAGTCTTCACTCTTGCCCTCGTGATCAGTAATCGACT  200

seq1  TATTATAATTGGCATTTGAAAGTGGGATGCTTTGTAACACAAATCTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATTGGCATTTGAAAGTGGGATGCTTTGTAACACAAATCTAAAT  250

seq1  AAAATATGTGATATTGACTTGAGCTGAGATGGAAGGACGACAGGGCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTGATATTGACTTGAGCTGAGATGGAAGGACGACAGGGCCATT  300

seq1  ATATAACTCGGAGCAACGGTAAGGAAATTGTTGTGGGAAGGTGGAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTCGGAGCAACGGTAAGGAAATTGTTGTGGGAAGGTGGAGAAAG  350

seq1  GAAACCCTATGTTGTGATGTGGAAAACAGAGAGAACATCATGTGTAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTATGTTGTGATGTGGAAAACAGAGAGAACATCATGTGTAATGA  400

seq1  GAAACAATATAAGTAGATACACAGTGTCTTCTACTTTCATACTTGAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATATAAGTAGATACACAGTGTCTTCTACTTTCATACTTGAGTGA  450

seq1  ACACATGCTGTTGCAGGAAATTTTAAAAGACATCTCGTTCCTACAGTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCTGTTGCAGGAAATTTTAAAAGACATCTCGTTCCTACAGTTGC  500

seq1  ATCTCTGCCCAGGCCACTTGGCTGGCCATGCACTGGCGGGCAATGGCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGCCCAGGCCACTTGGCTGGCCATGCACTGGCGGGCAATGGCCGA  550

seq1  CCTGTTTTTTTTTTTTTTTCTCATGGAGACTGATTCAAAACTCCAGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTTTTTTTTTTTTCTCATGGAGACTGATTCAAAACTCCAGTCTC  600

seq1  TCCATCCAGCTCACTAGGTTCCTGCTGGCAAGTTGTTACCATGCCAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCAGCTCACTAGGTTCCTGCTGGCAAGTTGTTACCATGCCAACCC  650

seq1  GGTGCTTCAAATCCCCCATGGCCTTTGTGGTGCACATCTGGCAAACCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCAAATCCCCCATGGCCTTTGTGGTGCACATCTGGCAAACCCAC  700

seq1  ACTTTGTTGACGTACCTTCTTCTCTTGAACCTAGACAAGCCTCTGTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTGACGTACCTTCTTCTCTTGAACCTAGACAAGCCTCTGTGTGA  750

seq1  AGGAAAACACAACACAAATGAAGTTCAGAGACAATGGTAACTCAATATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACACAACACAAATGAAGTTCAGAGACAATGGTAACTCAATATCT  800

seq1  GGGCACGACAACTAAAACCTAATCTTGTAAGCTTTATTAAAATCTGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACGACAACTAAAACCTAATCTTGTAAGCTTTATTAAAATCTGATTC  850

seq1  TTCTGGTGGCAAATCTTTGCAGATTTGCCATGATACCAGAAAGCTCTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTGGCAAATCTTTGCAGATTTGCCATGATACCAGAAAGCTCTAGC  900

seq1  AACTACATCTTCCCCATATGCTGTCCCCAGAAGTCTCAGGGATTGGTTCA  950
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  AACTACATCTTCCCCATATGCTGTCCCCAGAAGTCTCA-TGATTGGTTCA  949

seq1  CAAGAAGCCACCTGAGTATGTGACTCATTCCACATTCCAGACAACCTCTC  1000
      | ||||||||||||||||||||||||||| |||||||||||| |||||  
seq2  C-AGAAGCCACCTGAGTATGTGACTCATT-CACATTCCAGAC-ACCTCCT  996

seq1  CCAGGCGAG-CAGACTTAACATAAGATAAAAGCAGCACAGAGCCATCCAC  1049
      ||||||||| ||||||  ||||| ||| |||||||||||||| ||| |||
seq2  CCAGGCGAGCCAGACT--ACATAGGAT-AAAGCAGCACAGAG-CAT-CAC  1041

seq1  AACAACATGCAACATTAGAAGTGTGAACACCAAGCTGTCAATCCCACTCA  1099
      ||| |||||| ||| ||| ||||||||   | ||||||| ||||||||||
seq2  AAC-ACATGCCACA-TAG-AGTGTGAA---CCAGCTGTCCATCCCACTCA  1085

seq1  CACCAAAA  1107
      ||||||||
seq2  CACCAAAA  1093


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