BAC Information

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BAC

Clone NameB6Ng01-263N15
Chromosome3 (Build37)
Map Location 41,258,691 - 41,418,302
singlet/doubletdoublet
Overlap genePpia-ps3_337.1, LOC100039115, Phf17
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004
Downstream geneSclt1, D3Ertd751e, LOC666031, LOC100039204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263N15.bB6Ng01-263N15.g
ACCGA067913GA067914
length1,1191,076
definitionB6Ng01-263N15.b B6Ng01-263N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,417,182 - 41,418,302)(41,258,691 - 41,259,766)
sequence
gaattctatgattctgtaagagtgagtattcaagagtttgtgctttgggg
agaatgtagagggcaataatacatggtgctattcaagcctggccctctgc
aaagttacttcatttgttggttttttttttatagtgtttagttcaggttc
taatcttagtgtcttatggttacagtctactcttctgtttcctcaacaag
ttgcaaataacacaaacttctcacaatgatttataaatgactctggaaaa
aaattcaatctgaattgcaaggaagtatgtctgtagctcagaaacaatgg
gtatttgcttgcccctattatcagagctctcctcagcacacggcaacaag
ccatgtgcttccacaccggctgtttcatcaagaggccaagatgcttcgcc
tgatgatatctgtcctcctgctgatggtgctgctggcatggatacatttc
ttctctgatgcctcgctctctgagtcactcatttccccatcaggggcgta
cccatcattctcactgtcagctcttaacctgctcttcgctctctccttgg
ctggagctcggcttacacccagatgggagcagtctgagtgctggtggcag
gccccatcatgggcttctccttgctgctgccgctcccccttctttggaat
ccggaatcctccccagcttttcactgggctggcaggtgttataggcactt
tgactagggagccattgcacttgggcacaatctccttcctggtgccaggt
gctgactgccctactccaggggaggtggcagctcttgtgttgtccagatg
cctctgggatgtgtctgtggacctgagaggcttgtgactctgcttaaaag
atttgtcctttaagtctcctttaacgagatcacaatgaaaacgattgtct
cttctttttcccatggtctggggtcaccacaccattttttctgttgtgct
gatgatagagacgtgcttctgcaaaagttctttttctaagctcagcagct
ttctgagacttcagccccctcccttctacacaaagacttgctgcttatgc
gagtctgccctcggtccaggactatctgcactgcatcctcgattattgga
cctttttcagtggatgaac
gaattcttgccaggctaggggcagtcagtcaatttcagtccagggaagaa
agtgccacaccattcaaagagagaaaccccaaccaaaggtgtgtgatgca
taggtgattaggagggtgcaaagggacaccagggccgcacacatgatcat
gggtggaagctgctatcccagaaaatgcctgggagtggagctacagacac
caatgggtattgaccggatggaggagggggactttagcatctaaggtact
ttcaccatgggaatggcattgagctgagactgagtctcaagggaactcca
cagctctcctgaatctgccttggcactcaagcaagctcatccattgccat
agcagaacatgtgtgaaggcctcagagcacaggggacaatgatgagagat
ttcaaggagcagcaggtagctgggccacttgccagttaagctgagggtac
ccaggaaagagaggacactcagatatagttgaatttcaaataaacaagtt
tatgcctcaaatatcatataggatatacttctcctaaaaaagctattttt
tttttttggtctgaacataaacagaatctttcctgttatttgttgtttgt
tttgttttgtttgtttgtttgtttttaatttgctcagcctagctattcta
aggacactcttcgcagtctgtgaggcacctctgcatgaccacatcctcct
cagactctgagaagaaatgtaagagtggctcacttggttatcactgcctc
tcctagctcggagtcttcctcagcatattttcttgataaagcctaagagg
gagccattggcgatgcagaaatgcagatccaggaaagtggatctagggtc
agaagaaaccttaagttgggctggagatggtttttcgggtggtgtgctaa
ctaacacttcacactggactgatctaagtgattgccctggtcccagtcag
cttataaagtgcctaagaataagtggctcctggcttcatgtggcctcaac
tgagccccaaacttgcaaactttatgggttggatgttgttagaaagatgc
cattgaaccaattggctatcatcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41417182_41418302
seq2: B6Ng01-263N15.b_46_1164 (reverse)

seq1  GTTCATCCACTGAAAAA-GTCCCATAAACGA-GATGCAGTGCAGAATAGT  48
      ||||||||||||||||| |||| |||| ||| |||||||||||| |||||
seq2  GTTCATCCACTGAAAAAGGTCCAATAATCGAGGATGCAGTGCAG-ATAGT  49

seq1  TCTGGGACCGAGGGCAAGACCTCGCATAAGCAGCCAGGTCTTTGTGGTAG  98
       || ||||||||||| ||| ||||||||||||| || |||||||| ||||
seq2  CCT-GGACCGAGGGC-AGA-CTCGCATAAGCAG-CAAGTCTTTGT-GTAG  94

seq1  AAGGGAGGGGCTGGAGGTCTCAGAAAGCTTGCTGAGCTTAGAAAA--GAC  146
      ||||||||||   || |||||||||||| ||||||||||||||||   ||
seq2  AAGGGAGGGGGCTGAAGTCTCAGAAAGC-TGCTGAGCTTAGAAAAAGAAC  143

seq1  TTTTGCAGAAGCACGTCTCCTATCATCAGCACAACAG-AAAAATGGTGTG  195
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  TTTTGCAGAAGCACGTCT-CTATCATCAGCACAACAGAAAAAATGGTGTG  192

seq1  GTGACCCCAGACCATGGG-AAAAGAAGAGACAATCGTTTTCATTGTGATC  244
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGACCCCAGACCATGGGAAAAAGAAGAGACAATCGTTTTCATTGTGATC  242

seq1  TCGTTAAAGGAGACTTAAAGGACAAATCTTTTAAGCAGAGTCACAAGCCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAAAGGAGACTTAAAGGACAAATCTTTTAAGCAGAGTCACAAGCCT  292

seq1  CTCAGGTCCACAGACACATCCCAGAGGCATCTGGACAACACAAGAGCTGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCCACAGACACATCCCAGAGGCATCTGGACAACACAAGAGCTGC  342

seq1  CACCTCCCCTGGAGTAGGGCAGTCAGCACCTGGCACCAGGAAGGAGATTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCCCTGGAGTAGGGCAGTCAGCACCTGGCACCAGGAAGGAGATTG  392

seq1  TGCCCAAGTGCAATGGCTCCCTAGTCAAAGTGCCTATAACACCTGCCAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGTGCAATGGCTCCCTAGTCAAAGTGCCTATAACACCTGCCAGC  442

seq1  CCAGTGAAAAGCTGGGGAGGATTCCGGATTCCAAAGAAGGGGGAGCGGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAAAAGCTGGGGAGGATTCCGGATTCCAAAGAAGGGGGAGCGGCA  492

seq1  GCAGCAAGGAGAAGCCCATGATGGGGCCTGCCACCAGCACTCAGACTGCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAGGAGAAGCCCATGATGGGGCCTGCCACCAGCACTCAGACTGCT  542

seq1  CCCATCTGGGTGTAAGCCGAGCTCCAGCCAAGGAGAGAGCGAAGAGCAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGGGTGTAAGCCGAGCTCCAGCCAAGGAGAGAGCGAAGAGCAGG  592

seq1  TTAAGAGCTGACAGTGAGAATGATGGGTACGCCCCTGATGGGGAAATGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCTGACAGTGAGAATGATGGGTACGCCCCTGATGGGGAAATGAG  642

seq1  TGACTCAGAGAGCGAGGCATCAGAGAAGAAATGTATCCATGCCAGCAGCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGAGAGCGAGGCATCAGAGAAGAAATGTATCCATGCCAGCAGCA  692

seq1  CCATCAGCAGGAGGACAGATATCATCAGGCGAAGCATCTTGGCCTCTTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCAGGAGGACAGATATCATCAGGCGAAGCATCTTGGCCTCTTGA  742

seq1  TGAAACAGCCGGTGTGGAAGCACATGGCTTGTTGCCGTGTGCTGAGGAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGCCGGTGTGGAAGCACATGGCTTGTTGCCGTGTGCTGAGGAGA  792

seq1  GCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCTGAGCTACAGACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATAATAGGGGCAAGCAAATACCCATTGTTTCTGAGCTACAGACA  842

seq1  TACTTCCTTGCAATTCAGATTGAATTTTTTTCCAGAGTCATTTATAAATC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTTGCAATTCAGATTGAATTTTTTTCCAGAGTCATTTATAAATC  892

seq1  ATTGTGAGAAGTTTGTGTTATTTGCAACTTGTTGAGGAAACAGAAGAGTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGAAGTTTGTGTTATTTGCAACTTGTTGAGGAAACAGAAGAGTA  942

seq1  GACTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACACTATAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACACTATAAA  992

seq1  AAAAAAACCAACAAATGAAGTAACTTTGCAGAGGGCCAGGCTTGAATAGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCAACAAATGAAGTAACTTTGCAGAGGGCCAGGCTTGAATAGC  1042

seq1  ACCATGTATTATTGCCCTCTACATTCTCCCCAAAGCACAAACTCTTGAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTATTATTGCCCTCTACATTCTCCCCAAAGCACAAACTCTTGAAT  1092

seq1  ACTCACTCTTACAGAATCATAGAATTC  1121
      |||||||||||||||||||||||||||
seq2  ACTCACTCTTACAGAATCATAGAATTC  1119

seq1: chr3_41258691_41259766
seq2: B6Ng01-263N15.g_67_1142

seq1  GAATTCTTGCCAGGCTAGGGGCAGTCAGTCAATTTCAGTCCAGGGAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCAGGCTAGGGGCAGTCAGTCAATTTCAGTCCAGGGAAGAA  50

seq1  AGTGCCACACCATTCAAAGAGAGAAACCCCAACCAAAGGTGTGTGATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCACACCATTCAAAGAGAGAAACCCCAACCAAAGGTGTGTGATGCA  100

seq1  TAGGTGATTAGGAGGGTGCAAAGGGACACCAGGGCCGCACACATGATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGATTAGGAGGGTGCAAAGGGACACCAGGGCCGCACACATGATCAT  150

seq1  GGGTGGAAGCTGCTATCCCAGAAAATGCCTGGGAGTGGAGCTACAGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAAGCTGCTATCCCAGAAAATGCCTGGGAGTGGAGCTACAGACAC  200

seq1  CAATGGGTATTGACCGGATGGAGGAGGGGGACTTTAGCATCTAAGGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGTATTGACCGGATGGAGGAGGGGGACTTTAGCATCTAAGGTACT  250

seq1  TTCACCATGGGAATGGCATTGAGCTGAGACTGAGTCTCAAGGGAACTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCATGGGAATGGCATTGAGCTGAGACTGAGTCTCAAGGGAACTCCA  300

seq1  CAGCTCTCCTGAATCTGCCTTGGCACTCAAGCAAGCTCATCCATTGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCCTGAATCTGCCTTGGCACTCAAGCAAGCTCATCCATTGCCAT  350

seq1  AGCAGAACATGTGTGAAGGCCTCAGAGCACAGGGGACAATGATGAGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAACATGTGTGAAGGCCTCAGAGCACAGGGGACAATGATGAGAGAT  400

seq1  TTCAAGGAGCAGCAGGTAGCTGGGCCACTTGCCAGTTAAGCTGAGGGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGAGCAGCAGGTAGCTGGGCCACTTGCCAGTTAAGCTGAGGGTAC  450

seq1  CCAGGAAAGAGAGGACACTCAGATATAGTTGAATTTCAAATAAACAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGAGAGGACACTCAGATATAGTTGAATTTCAAATAAACAAGTT  500

seq1  TATGCCTCAAATATCATATAGGATATACTTCTCCTAAAAAAGCTATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTCAAATATCATATAGGATATACTTCTCCTAAAAAAGCTATTTTT  550

seq1  TTTTTTTGGTCTGAACATAAACAGAATCTTTCCTGTTATTTGTTGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGGTCTGAACATAAACAGAATCTTTCCTGTTATTTGTTGTTTGT  600

seq1  TTTGTTTTGTTTGTTTGTTTGTTTTTAATTTGCTCAGCCTAGCTATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTGTTTGTTTGTTTTTAATTTGCTCAGCCTAGCTATTCTA  650

seq1  AGGACACTCTTCGCAGTCTGTGAGGCACCTCTGCATGACCACATCCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTCTTCGCAGTCTGTGAGGCACCTCTGCATGACCACATCCTCCT  700

seq1  CAGACTCTGAGAAGAAATGTAAGAGTGGCTCACTTGGTTATCACTGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCTGAGAAGAAATGTAAGAGTGGCTCACTTGGTTATCACTGCCTC  750

seq1  TCCTAGCTCGGAGTCTTCCTCAGCATATTTTCTTGATAAAGCCTAAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTCGGAGTCTTCCTCAGCATATTTTCTTGATAAAGCCTAAGAGG  800

seq1  GAGCCATTGGCGATGCAGAAATGCAGATCCAGGAAAGTGGATCTAGGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATTGGCGATGCAGAAATGCAGATCCAGGAAAGTGGATCTAGGGTC  850

seq1  AGAAGAAACCTTAAGTTGGGCTGGAGATGGTTTTTC-GGTGGTGTGCTAA  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGAAGAAACCTTAAGTTGGGCTGGAGATGGTTTTTCGGGTGGTGTGCTAA  900

seq1  CTAACACTTCACACTGGACTGATCTAAGTGATTGCCCCTGGTCCCAGTCA  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTAACACTTCACACTGGACTGATCTAAGTGATTG-CCCTGGTCCCAGTCA  949

seq1  GCTTATAAAGTGCTTAGGAATAAGTGGCTCTTGGCTTCATGTGGCTTCAA  999
      ||||||||||||| || ||||||||||||| |||||||||||||| ||||
seq2  GCTTATAAAGTGCCTAAGAATAAGTGGCTCCTGGCTTCATGTGGCCTCAA  999

seq1  CCTGAGCCCCAAACTTGCAAACTTTATGGTTTGGATGTTTGTAGAAAGAT  1049
       |||||||||||||||||||||||||||| |||||||||  |||||||||
seq2  -CTGAGCCCCAAACTTGCAAACTTTATGGGTTGGATGTTGTTAGAAAGAT  1048

seq1  GCCATTG-ATCAATT-GCTATTCATCATT  1076
      ||||||| | ||||| |||| ||||||||
seq2  GCCATTGAACCAATTGGCTA-TCATCATT  1076