BAC Information

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BAC

Clone NameB6Ng01-263P18
Chromosome3 (Build37)
Map Location 49,816,219 - 49,944,937
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263P18.bB6Ng01-263P18.g
ACCGA068010GA068011
length1,1621,133
definitionB6Ng01-263P18.b B6Ng01-263P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,943,777 - 49,944,937)(49,816,219 - 49,817,342)
sequence
gaattcaggtcctctgcaagaggagtatcagcttttaaccactgagaatc
tcttcaggtgtagagaaacagaatttaaaggaatagttaaggtaaaatga
ggtccttagggtgtgcgttcctcctgtaggacaatattccggtttggaag
aataaatctggacccaaaaatacacgtagagaagacaatgtaaaatccct
agaaaaactcagccatttgtaagccaaggagagaggctggaattgatcca
tcacacaaagcctgcagaaggagccatcctacagactgtgaactaatact
aatatcctctcctctgtaatgctaatgtaatcatcattatgattccaaga
atggcattcgcgctattgggactgcaaaacaatatatgtctaattttttc
attatatcatcttcactctaagattttgttaacttaatcaaataatataa
tactaatgggtaatagtcttaaatgcacaaatgtttaattctttcatgaa
taatcatgacaggtaatctctaattttacagttaagtaatttcaaatatg
aaaattatcacactgtggatctcagcaacaactggattcaaaccaaacta
tcttgttgcaaagcctctacctctcctattctctgcagtattcttagtat
tgttcaagttgtgagcaatatccataattaaggtaaccagggagccatgt
atttgaatattttcctaatgcttggcagatactgactataaaaatagctc
tactctctaaaaacggagactttctcctccctctttaagctagatgggat
tttgtgatgactcagtgaagtttcaagaactatataagtaggtcttggga
gatttgatgccctccagttggctgtccacaagtcatactggttccagaga
caggactcccaacatggtttgtgatacccagtgaaaatgaatgaggtgtt
aaaaaaagtttaaaattcaccatggttaacagagcattagaaataaaaag
ttgaagaataagagcatttatacatgaagaccctgtgaaggctgcctgtt
cgtgaagctcaatgaattaagctttatgaaattaggcatgttttttgttt
ctaagatgctgattttactttaaattgggttacaaaacagatgaactccc
cataagaatata

gaattccaaagcaagcagcgaggtccacagccagtcatcatcatcatgag
gccctctgatgggcatagtcttttcctctaaagaaaaccataggatttct
ggtgacatgtcccacaacatcagttggcttctatctttgttttgctaaca
aagaaaagaaaagaaactaaagttgccattaagtgaaacacagtgatgca
agcataaaacaacagcaacaaaatcactttcaaggatgtttcattaacca
ttaacaatcagagataaaatctcactgttttctgggttttccattaataa
ctacgtgagaattaacagaaatctaaaacttaaaagtagatgtattacat
atgttcatttgtgtctggttccaatcatttatacactatacactcataca
gctagatatttgtataagacacatcatattgctatgtgcttaatgacaac
atttacaaaatcttgcattggcagtttgctcctctatcaagagagtatgg
ctaattgttctaagagtggtttatatatagcctagctttcgaatgggctt
catttaaaattggcaggagtgacttacacctgcaaaaacttgagtatttc
tctcttatcttgggaatataggaagctgtttctcatcacagggcatatgc
ctaaggagttacattcttgtatgctttgattattcctcaaatccagaagg
cagactccattatcaaaaagaaatttgctcaagaactttttggaaaaata
tggttttcacaaaggaacctcaagctagacaggatgtttatttaagacat
ttgtttgaataaccatgagatactctgaacagaattacaggacagcccta
cttttaatttatcatgctatgattcacataacatttgccaacttgaaaat
gcaagtttattcttttatcaagaataattactaatggaaactatttttct
tactttgaaacaacaatgaaccaaaaaatgttcaagcttcatggtaccct
tttctcccattgcttatttgcatagactagaatcatggagacacattgga
catcttatgtagcataaagtaataaaatatacctagctgcagcttcaatt
tcatcaaaagaaaatgcatccaatgatttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49943777_49944937
seq2: B6Ng01-263P18.b_46_1207 (reverse)

seq1  TATATTCTTATGGTGAGTCCATCCTGTTTTGTGTACACAA-TTAAAGTAA  49
      ||||||||||||| |||| ||| |||||||||  || ||| ||||||| |
seq2  TATATTCTTATGGGGAGTTCAT-CTGTTTTGT-AACCCAATTTAAAGT-A  47

seq1  AAATCAGCATCCTTAGAAAC-AAAAACATGCCTTAATTCATTAAAGCTTA  98
      |||||||||| ||||||||| |||||||||||| | |||| |||||||||
seq2  AAATCAGCAT-CTTAGAAACAAAAAACATGCCTAATTTCA-TAAAGCTTA  95

seq1  ATTCATTGAGCTTCACGAACAGGCAGCCTTCACAGGGTTCTCATGTATAA  148
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  ATTCATTGAGCTTCACGAACAGGCAGCCTTCACAGGGTCTTCATGTATAA  145

seq1  ATGCTC-TATTCTTC-ACTTTT--ATTCTAATGCTCTGTT-ACCATGGTG  193
      |||||| |||||||| ||||||   ||||||||||||||| |||||||||
seq2  ATGCTCTTATTCTTCAACTTTTTATTTCTAATGCTCTGTTAACCATGGTG  195

seq1  AATTTTAAACTATTTTTAAACACCTCATTCATTTTCACTGGGTATCACAA  243
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  AATTTTAAACT-TTTTTTAACACCTCATTCATTTTCACTGGGTATCACAA  244

seq1  ACCATGTTGGGAGTCCTGTCTCTGGAACCAGTATGACTTGTGGACAGCCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTGGGAGTCCTGTCTCTGGAACCAGTATGACTTGTGGACAGCCA  294

seq1  ACTGGAGGGCATCAAATCTCCCAAGACCTACTTATATAGTTCTTGAAACT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGGGCATCAAATCTCCCAAGACCTACTTATATAGTTCTTGAAACT  344

seq1  TCACTGAGTCATCACAAAATCCCATCTAGCTTAAAGAGGGAGGAGAAAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGTCATCACAAAATCCCATCTAGCTTAAAGAGGGAGGAGAAAGT  394

seq1  CTCCGTTTTTAGAGAGTAGAGCTATTTTTATAGTCAGTATCTGCCAAGCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTTTTTAGAGAGTAGAGCTATTTTTATAGTCAGTATCTGCCAAGCA  444

seq1  TTAGGAAAATATTCAAATACATGGCTCCCTGGTTACCTTAATTATGGATA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAATATTCAAATACATGGCTCCCTGGTTACCTTAATTATGGATA  494

seq1  TTGCTCACAACTTGAACAATACTAAGAATACTGCAGAGAATAGGAGAGGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCACAACTTGAACAATACTAAGAATACTGCAGAGAATAGGAGAGGT  544

seq1  AGAGGCTTTGCAACAAGATAGTTTGGTTTGAATCCAGTTGTTGCTGAGAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTTGCAACAAGATAGTTTGGTTTGAATCCAGTTGTTGCTGAGAT  594

seq1  CCACAGTGTGATAATTTTCATATTTGAAATTACTTAACTGTAAAATTAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGTGATAATTTTCATATTTGAAATTACTTAACTGTAAAATTAGA  644

seq1  GATTACCTGTCATGATTATTCATGAAAGAATTAAACATTTGTGCATTTAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACCTGTCATGATTATTCATGAAAGAATTAAACATTTGTGCATTTAA  694

seq1  GACTATTACCCATTAGTATTATATTATTTGATTAAGTTAACAAAATCTTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTACCCATTAGTATTATATTATTTGATTAAGTTAACAAAATCTTA  744

seq1  GAGTGAAGATGATATAATGAAAAAATTAGACATATATTGTTTTGCAGTCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAGATGATATAATGAAAAAATTAGACATATATTGTTTTGCAGTCC  794

seq1  CAATAGCGCGAATGCCATTCTTGGAATCATAATGATGATTACATTAGCAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCGCGAATGCCATTCTTGGAATCATAATGATGATTACATTAGCAT  844

seq1  TACAGAGGAGAGGATATTAGTATTAGTTCACAGTCTGTAGGATGGCTCCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGGAGAGGATATTAGTATTAGTTCACAGTCTGTAGGATGGCTCCT  894

seq1  TCTGCAGGCTTTGTGTGATGGATCAATTCCAGCCTCTCTCCTTGGCTTAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGCTTTGTGTGATGGATCAATTCCAGCCTCTCTCCTTGGCTTAC  944

seq1  AAATGGCTGAGTTTTTCTAGGGATTTTACATTGTCTTCTCTACGTGTATT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTGAGTTTTTCTAGGGATTTTACATTGTCTTCTCTACGTGTATT  994

seq1  TTTGGGTCCAGATTTATTCTTCCAAACCGGAATATTGTCCTACAGGAGGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCCAGATTTATTCTTCCAAACCGGAATATTGTCCTACAGGAGGA  1044

seq1  ACGCACACCCTAAGGACCTCATTTTACCTTAACTATTCCTTTAAATTCTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACACCCTAAGGACCTCATTTTACCTTAACTATTCCTTTAAATTCTG  1094

seq1  TTTCTCTACACCTGAAGAGATTCTCAGTGGTTAAAAGCTGATACTCCTCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTACACCTGAAGAGATTCTCAGTGGTTAAAAGCTGATACTCCTCT  1144

seq1  TGCAGAGGACCTGAATTC  1161
      ||||||||||||||||||
seq2  TGCAGAGGACCTGAATTC  1162


seq1: chr3_49816219_49817342
seq2: B6Ng01-263P18.g_67_1199

seq1  GAATTCCAAAGCAAGCAGCGAGGTCCACAGCCAGTCATCATCATCATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGCAAGCAGCGAGGTCCACAGCCAGTCATCATCATCATGAG  50

seq1  GCCCTCTGATGGGCATAGTCTTTTCCTCTAAAGAAAACCATAGGATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGATGGGCATAGTCTTTTCCTCTAAAGAAAACCATAGGATTTCT  100

seq1  GGTGACATGTCCCACAACATCAGTTGGCTTCTATCTTTGTTTTGCTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATGTCCCACAACATCAGTTGGCTTCTATCTTTGTTTTGCTAACA  150

seq1  AAGAAAAGAAAAGAAACTAAAGTTGCCATTAAGTGAAACACAGTGATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAAGAAACTAAAGTTGCCATTAAGTGAAACACAGTGATGCA  200

seq1  AGCATAAAACAACAGCAACAAAATCACTTTCAAGGATGTTTCATTAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAAACAACAGCAACAAAATCACTTTCAAGGATGTTTCATTAACCA  250

seq1  TTAACAATCAGAGATAAAATCTCACTGTTTTCTGGGTTTTCCATTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATCAGAGATAAAATCTCACTGTTTTCTGGGTTTTCCATTAATAA  300

seq1  CTACGTGAGAATTAACAGAAATCTAAAACTTAAAAGTAGATGTATTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGTGAGAATTAACAGAAATCTAAAACTTAAAAGTAGATGTATTACAT  350

seq1  ATGTTCATTTGTGTCTGGTTCCAATCATTTATACACTATACACTCATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATTTGTGTCTGGTTCCAATCATTTATACACTATACACTCATACA  400

seq1  GCTAGATATTTGTATAAGACACATCATATTGCTATGTGCTTAATGACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATATTTGTATAAGACACATCATATTGCTATGTGCTTAATGACAAC  450

seq1  ATTTACAAAATCTTGCATTGGCAGTTTGCTCCTCTATCAAGAGAGTATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAAATCTTGCATTGGCAGTTTGCTCCTCTATCAAGAGAGTATGG  500

seq1  CTAATTGTTCTAAGAGTGGTTTATATATAGCCTAGCTTTCGAATGGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGTTCTAAGAGTGGTTTATATATAGCCTAGCTTTCGAATGGGCTT  550

seq1  CATTTAAAATTGGCAGGAGTGACTTACACCTGCAAAAACTTGAGTATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAATTGGCAGGAGTGACTTACACCTGCAAAAACTTGAGTATTTC  600

seq1  TCTCTTATCTTGGGAATATAGGAAGCTGTTTCTCATCACAGGGCATATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATCTTGGGAATATAGGAAGCTGTTTCTCATCACAGGGCATATGC  650

seq1  CTAAGGAGTTACATTCTTGTATGCTTTGATTATTCCTCAAATCCAGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAGTTACATTCTTGTATGCTTTGATTATTCCTCAAATCCAGAAGG  700

seq1  CAGACTCCATTATCAAAAAGAAATTTGCTCAAGAACTTTTTGGAAAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCATTATCAAAAAGAAATTTGCTCAAGAACTTTTTGGAAAAATA  750

seq1  TGGTTTTCACAAAGGAACCTCAAGCTAGACAGGATGTTTATTTAAGACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCACAAAGGAACCTCAAGCTAGACAGGATGTTTATTTAAGACAT  800

seq1  TTGTTTGAATAACCATGAGATACTCTGAACAGAATTACAGGACAGCCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGAATAACCATGAGATACTCTGAACAGAATTACAGGACAGCCCTA  850

seq1  CTTTTAAATTTATCATGCTATGATTCACATAACATTTGCCAACTTGAAAA  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTT-AATTTATCATGCTATGATTCACATAACATTTGCCAACTTGAAAA  899

seq1  TGCAAAGTTTAT--CTTTATCAAGATAATTTACTAATGGAAACTA-TTTT  947
      ||| ||||||||   ||||||||||  | |||||||||||||||| ||||
seq2  TGC-AAGTTTATTCTTTTATCAAGAATAATTACTAATGGAAACTATTTTT  948

seq1  CTTACTTTG-AACAAC-ATGAACC-AAAAATGTTC-AGCTTCATGGTAAC  993
      ||||||||| |||||| ||||||| |||||||||| |||||||||||| |
seq2  CTTACTTTGAAACAACAATGAACCAAAAAATGTTCAAGCTTCATGGTACC  998

seq1  C-TTTCTCC--ATGCTTATTTGCATAGACTAG-ATCATGGAGACACA-TG  1038
      | |||||||   |||||||||||||||||||| |||||||||||||| ||
seq2  CTTTTCTCCCATTGCTTATTTGCATAGACTAGAATCATGGAGACACATTG  1048

seq1  GACAATCTATGTAGCATAAAGTAATAAAATATTAACTAGCTGCAGCCTCA  1088
      ||||   |||||||||||||||||||||||| || ||||||||||| |||
seq2  GACATCTTATGTAGCATAAAGTAATAAAATA-TACCTAGCTGCAGCTTCA  1097

seq1  ATTCAATCAAAAGAAATGGTATCAGATGATTTGTTT  1124
      |||  |||||||||||  | |||  |||||||||||
seq2  ATTTCATCAAAAGAAAATGCATCCAATGATTTGTTT  1133


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