BAC Information

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BAC

Clone NameB6Ng01-264A16
Chromosome3 (Build37)
Map Location 104,957,441 - 105,120,082
singlet/doubletdoublet
Overlap genenone
Upstream geneMagi3, EG433634, LOC668622, Lrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik
Downstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264A16.bB6Ng01-264A16.g
ACCGA068052GA068053
length1,128278
definitionB6Ng01-264A16.b B6Ng01-264A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,957,441 - 104,958,562)(105,119,805 - 105,120,082)
sequence
gaattcatcactggttctgaccttgggttccttgcactttttcattgcaa
tatgccaatgagtgagagaagaggagagaagactcacggtgagtagggtt
tagagtagtggcaagcacagcctttcaggatggagaaatggcagcagcag
tgtgcctacttggcacggtagaggctaaaaggtgttggatgatagtgcaa
acacagtagtgaagtcaagatgggagatgccaactgatgctcagggcttg
acctgcagacaagggtgtgataagtttgcaggacctggggggatgcaggc
aggggagtttgggtgggtgaaagacacagaaagagacactaaggtttgga
ggtggcatggagtcttccctgaaggcatggcagtgtctacccctgtatat
actatgcctatcagatggtgttcttagggacacagaggtaatgatggtag
aaatgctaccataggatagctttgagtctaggtctgcaaattttgcaatt
tccagaccccatgaaaggacaagcctggcaacctctccaattgcttgttc
cttttcctccttccttctcttatgcttatttttaaattgagataggctct
tgctttgctgcactggaagatggcctggagttcactgtattgcaagggct
ggatatgaactcttgatctttctgctcccgcctctcagatgcaggaatca
caggcaccaggactgtcaaggtcccctatttcttcagtggtcagctggaa
cattaccaccccaatactcggcttcagttctacattttcatgccaccctc
tgtttctcccatgtggcacttgccatagtagtagttggttgatttaatac
ctgacttggctatgaatcacccagttccatgggatcagaagttgctctat
gatgttcagggtttaaaactccaacaaggagcatggaactgggactaatt
atcaggaaatatgtacttaatgactgaatggatcttgggagtggatatga
attaatcattattattaatcaattattaatattactccgcatggcagggt
aggagaattacggtcatctcaaaacgatctttatagcctattgaaaaata
ggattcaatcaatgttggctggtacagg
ctcaggatcatggtaaggtacgtagaaggaagcataccaaatgtaggttt
taactattttctaatttaattattttaaggaacagctatactgagacgtg
atttgcacagtacagattttcctcatttaatgtgcacactccactggttt
tcattttgttcacagagttgtgtaaccatctgcacaatcaggaaagcaga
ttttcaaactgcaaaaatctctgtatacctatcaatttttgctatcactg
cactgtggggggtgtggagagagaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_104957441_104958562
seq2: B6Ng01-264A16.b_45_1172

seq1  GAATTCATCACTGGTTCTGACCTTGGGTTCCTTGCACTTTTTCATTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACTGGTTCTGACCTTGGGTTCCTTGCACTTTTTCATTGCAA  50

seq1  TATGCCAATGAGTGAGAGAAGAGGAGAGAAGACTCACGGTGAGTAGGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAATGAGTGAGAGAAGAGGAGAGAAGACTCACGGTGAGTAGGGTT  100

seq1  TAGAGTAGTGGCAAGCACAGCCTTTCAGGATGGAGAAATGGCAGCAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAGTGGCAAGCACAGCCTTTCAGGATGGAGAAATGGCAGCAGCAG  150

seq1  TGTGCCTACTTGGCACGGTAGAGGCTAAAAGGTGTTGGATGATAGTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTACTTGGCACGGTAGAGGCTAAAAGGTGTTGGATGATAGTGCAA  200

seq1  ACACAGTAGTGAAGTCAAGATGGGAGATGCCAACTGATGCTCAGGGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTAGTGAAGTCAAGATGGGAGATGCCAACTGATGCTCAGGGCTTG  250

seq1  ACCTGCAGACAAGGGTGTGATAAGTTTGCAGGACCTGGGGGGATGCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAGACAAGGGTGTGATAAGTTTGCAGGACCTGGGGGGATGCAGGC  300

seq1  AGGGGAGTTTGGGTGGGTGAAAGACACAGAAAGAGACACTAAGGTTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGTTTGGGTGGGTGAAAGACACAGAAAGAGACACTAAGGTTTGGA  350

seq1  GGTGGCATGGAGTCTTCCCTGAAGGCATGGCAGTGTCTACCCCTGTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCATGGAGTCTTCCCTGAAGGCATGGCAGTGTCTACCCCTGTATAT  400

seq1  ACTATGCCTATCAGATGGTGTTCTTAGGGACACAGAGGTAATGATGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCCTATCAGATGGTGTTCTTAGGGACACAGAGGTAATGATGGTAG  450

seq1  AAATGCTACCATAGGATAGCTTTGAGTCTAGGTCTGCAAATTTTGCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTACCATAGGATAGCTTTGAGTCTAGGTCTGCAAATTTTGCAATT  500

seq1  TCCAGACCCCATGAAAGGACAAGCCTGGCAACCTCTCCAATTGCTTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACCCCATGAAAGGACAAGCCTGGCAACCTCTCCAATTGCTTGTTC  550

seq1  CTTTTCCTCCTTCCTTCTCTTATGCTTATTTTTAAATTGAGATAGGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTCCTTCCTTCTCTTATGCTTATTTTTAAATTGAGATAGGCTCT  600

seq1  TGCTTTGCTGCACTGGAAGATGGCCTGGAGTTCACTGTATTGCAAGGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCTGCACTGGAAGATGGCCTGGAGTTCACTGTATTGCAAGGGCT  650

seq1  GGATATGAACTCTTGATCTTTCTGCTCCCGCCTCTCAGATGCAGGAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGAACTCTTGATCTTTCTGCTCCCGCCTCTCAGATGCAGGAATCA  700

seq1  CAGGCACCAGGACTGTCAAGGTCCCCTATTTCTTCAGTGGTCAGCTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACCAGGACTGTCAAGGTCCCCTATTTCTTCAGTGGTCAGCTGGAA  750

seq1  CATTACCACCCCAATACTCGGCTTCAGTTCTACATTTTCATGCCACCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCACCCCAATACTCGGCTTCAGTTCTACATTTTCATGCCACCCTC  800

seq1  TGTTTCTCCCATGTGGCACTTGCCATAGTAGTAGTTGGTTGA-TTAATAC  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTTTCTCCCATGTGGCACTTGCCATAGTAGTAGTTGGTTGATTTAATAC  850

seq1  CTGACTTGGCTATGAATCACCAAGTTCCAT-GGATCAGAAGTTGCTCTAT  898
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  CTGACTTGGCTATGAATCACCCAGTTCCATGGGATCAGAAGTTGCTCTAT  900

seq1  GATGTTCAGGG-TTAAAACTCCAACAAGGAGCATGGAACTGGGACTAATT  947
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCAGGGTTTAAAACTCCAACAAGGAGCATGGAACTGGGACTAATT  950

seq1  ATCAGGAAATATGTACTTAATGACTGAATGGATCTT-GGAGTGGATATGA  996
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCAGGAAATATGTACTTAATGACTGAATGGATCTTGGGAGTGGATATGA  1000

seq1  TTAATTAATTATTATTAATCAATTATTAATTATTAATTCGCATGGCA-GG  1045
       | | | |||||||||||||||||||||| ||||| | ||||||||| ||
seq2  ATTAATCATTATTATTAATCAATTATTAA-TATTACTCCGCATGGCAGGG  1049

seq1  TAGGAAGATATAAGGTCATCTCAAAA-GATCTTTATAAAGCTATTG-AAA  1093
      |||| |||  || ||||||||||||| ||||||||| |  |||||| |||
seq2  TAGG-AGAATTACGGTCATCTCAAAACGATCTTTAT-AGCCTATTGAAAA  1097

seq1  ATAGGA-TCAATCAGTGTT-GCTGGGACAGG  1122
      |||||| ||||||| |||| ||||| |||||
seq2  ATAGGATTCAATCAATGTTGGCTGGTACAGG  1128

seq1: chr3_105119805_105120082
seq2: B6Ng01-264A16.g_73_350 (reverse)

seq1  CCCTTCTCTCTCCACACCCCCCACAGTGCAGTGATAGCAAAAATTGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCTCTCCACACCCCCCACAGTGCAGTGATAGCAAAAATTGATAG  50

seq1  GTATACAGAGATTTTTGCAGTTTGAAAATCTGCTTTCCTGATTGTGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAGAGATTTTTGCAGTTTGAAAATCTGCTTTCCTGATTGTGCAGA  100

seq1  TGGTTACACAACTCTGTGAACAAAATGAAAACCAGTGGAGTGTGCACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACACAACTCTGTGAACAAAATGAAAACCAGTGGAGTGTGCACATT  150

seq1  AAATGAGGAAAATCTGTACTGTGCAAATCACGTCTCAGTATAGCTGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGAAAATCTGTACTGTGCAAATCACGTCTCAGTATAGCTGTTCC  200

seq1  TTAAAATAATTAAATTAGAAAATAGTTAAAACCTACATTTGGTATGCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAATTAAATTAGAAAATAGTTAAAACCTACATTTGGTATGCTTC  250

seq1  CTTCTACGTACCTTACCATGATCCTGAG  278
      ||||||||||||||||||||||||||||
seq2  CTTCTACGTACCTTACCATGATCCTGAG  278