BAC Information

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BAC

Clone NameB6Ng01-264B07
Chromosome3 (Build37)
Map Location 158,552,272 - 158,553,375
singlet/doubletsinglet
Overlap genenone
Upstream geneCth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7, LOC100041008
Downstream geneLOC668905, LOC668907, Depdc1a, Rpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264B07.bB6Ng01-264B07.g
ACCGA068081GA068082
length1,2201,101
definitionB6Ng01-264B07.b B6Ng01-264B07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatctctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtaaagtaccttctacttctattttgtgaaatagtttgtgaagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tctttcaggatctgtttgttatgtctcccttttcatttctaattttgtta
attaggattttgtccctgtgccctttagtgagtctagctaagggtttatc
tatcttgttgattttctcaaagaaccaactcctcgtttggttaattcttt
gaatagttcttcttgtttccacttgggttgatttcacccctgagttaatt
atttcctgccgtcctactccttcttgggtgaatttgcttcctttttttct
agagcttttaagattgtgttgtcaagctggctagttattgtgcttgtctt
cccggttctttcttggaggcactcagagctatgagttttccctcttagaa
tggttttcattgtgtcccatagggtttgggtacgttggtggcttccattt
tcatcaactccaaaaagtctttaattcttcctaattccttcctggaccaa
gttatcattgagaagaggtgtatattcagatttccatcggtaatgttggg
ccttcatagtacgttgttattgacgatacgatctaggtcatgggtgggtc
ctggtatgggactactacgt
gaattcagacacactaagtttaatatactattgatgtgtgagtgaggatg
tggacatattcaaggaaactgtcatctaatttatgtcattgtgatagtta
atattcactgtcaagtcaatatgatataaaatgacctaaaaaaaaaaaaa
aaacaaacctctggaaatatttctgaaggagtttctatgttggcttaatt
aaggtagaaatgcccatcctcaccatgaacagcactattccatgagctga
gttaccaggctggataaggaaaaagtaggcttagcatcagtgttcatttc
tctctgtttcctgtctgtgagaccagttatcccatgtttttgtgaacatg
acttcttcaccatgattgtcttgtatctcccagagctgtgattcaaaata
cattcttctttaaattgctttggtaaggtatttttggaaaataaatagga
aaataactaataccaccattgtttgaagaacagtaaagattaagatttag
tcacactttcagtaacttttactatatgttctcaaatttatttcatcaaa
attgatcagcataaattatgaatttgcttataggaaaagaatgttaagat
ggaactaaaatcaccattaggcaagaagtagtggaagtcctgggtaattc
tgccagtttgaatgaggtccttgctcatttctcagaacgatctcaaaatg
acttttatttctatacttggttgcacttttaatgctatattgactgaaga
tgtgatagtaatcataatgaaaccaaagcatttaataacaaaatgcaaac
aaaagtgagagaaagaaggtgaccacataatttcagagcagtatcttaat
cagtcttgtaggaaaacaagctaaataaaagataacaaattaagagacag
acaaaaatttggaggcaagagtatataaacatagagttgtagagtgggaa
gaagttgatatttgtataaagcaaactggaaattttcttactacaagtat
atcatgctatcaaaggagaatgattaaaagccatgaagatcacatgtagt
agcccagactttaatctcctgggcatgtaacttagtaatgttaatttgct
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_158552272_158553375
seq2: B6Ng01-264B07.g_68_1168 (reverse)

seq1  CAGCAAAATTAACA-TACTAGTTTACATGCCCAGGAGATTTAAAGTCT-G  48
      |||| ||||||||| |||||  |||||||||||||||| ||||||||| |
seq2  CAGC-AAATTAACATTACTAAGTTACATGCCCAGGAGA-TTAAAGTCTGG  48

seq1  GCTACTACAATGTGATCTTTCATGGC-TTTAATCATCTCCCTTTGAATAG  97
      |||||||| |||||||| |||||||| |||||||||   |||||| ||||
seq2  GCTACTAC-ATGTGATC-TTCATGGCTTTTAATCATTCTCCTTTG-ATAG  95

seq1  CATGATATACTTGTAGTAAGAAAATTTCCAGTTTGCTTTATACAAATATT  147
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATGATATACTTGTAGTAAGAAAATTTCCAGTTTGCTTTATACAAATA-T  144

seq1  CAACTTCTTCCCACTCTACAACTCTATGTTTATATACTCTTGCCT-CAAA  196
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAACTTCTTCCCACTCTACAACTCTATGTTTATATACTCTTGCCTCCAAA  194

seq1  TTTTTGTCTGTCTCTTAATTTTGTTATCTTTTATTTAGCTTGTTTTCCTA  246
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTTGTCTGTCTCTTAA-TTTGTTATCTTTTATTTAGCTTGTTTTCCTA  243

seq1  CAAGACTGATTAAGATACTGCTCTGAAATTATGTGGTCACCTTCTTTCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTGATTAAGATACTGCTCTGAAATTATGTGGTCACCTTCTTTCTC  293

seq1  TCACTTTTGTTTGCATTTTGTTATTAAATGCTTTGGTTTCATTATGATTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTGTTTGCATTTTGTTATTAAATGCTTTGGTTTCATTATGATTA  343

seq1  CTATCACATCTTCAGTCAATATAGCATTAAAAGTGCAACCAAGTATAGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACATCTTCAGTCAATATAGCATTAAAAGTGCAACCAAGTATAGAA  393

seq1  ATAAAAGTCATTTTGAGATCGTTCTGAGAAATGAGCAAGGACCTCATTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTCATTTTGAGATCGTTCTGAGAAATGAGCAAGGACCTCATTCA  443

seq1  AACTGGCAGAATTACCCAGGACTTCCACTACTTCTTGCCTAATGGTGATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCAGAATTACCCAGGACTTCCACTACTTCTTGCCTAATGGTGATT  493

seq1  TTAGTTCCATCTTAACATTCTTTTCCTATAAGCAAATTCATAATTTATGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCCATCTTAACATTCTTTTCCTATAAGCAAATTCATAATTTATGC  543

seq1  TGATCAATTTTGATGAAATAAATTTGAGAACATATAGTAAAAGTTACTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAATTTTGATGAAATAAATTTGAGAACATATAGTAAAAGTTACTGA  593

seq1  AAGTGTGACTAAATCTTAATCTTTACTGTTCTTCAAACAATGGTGGTATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGACTAAATCTTAATCTTTACTGTTCTTCAAACAATGGTGGTATT  643

seq1  AGTTATTTTCCTATTTATTTTCCAAAAATACCTTACCAAAGCAATTTAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTTCCTATTTATTTTCCAAAAATACCTTACCAAAGCAATTTAAA  693

seq1  GAAGAATGTATTTTGAATCACAGCTCTGGGAGATACAAGACAATCATGGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGTATTTTGAATCACAGCTCTGGGAGATACAAGACAATCATGGT  743

seq1  GAAGAAGTCATGTTCACAAAAACATGGGATAACTGGTCTCACAGACAGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTCATGTTCACAAAAACATGGGATAACTGGTCTCACAGACAGGA  793

seq1  AACAGAGAGAAATGAACACTGATGCTAAGCCTACTTTTTCCTTATCCAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAGAAATGAACACTGATGCTAAGCCTACTTTTTCCTTATCCAGC  843

seq1  CTGGTAACTCAGCTCATGGAATAGTGCTGTTCATGGTGAGGATGGGCATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAACTCAGCTCATGGAATAGTGCTGTTCATGGTGAGGATGGGCATT  893

seq1  TCTACCTTAATTAAGCCAACATAGAAACTCCTTCAGAAATATTTCCAGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTAATTAAGCCAACATAGAAACTCCTTCAGAAATATTTCCAGAG  943

seq1  GTTTGTTTTTTTTTTTTTTTTAGGTCATTTTATATCATATTGACTTGACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTTTTTTTTTTTTTAGGTCATTTTATATCATATTGACTTGACA  993

seq1  GTGAATATTAACTATCACAATGACATAAATTAGATGACAGTTTCCTTGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATTAACTATCACAATGACATAAATTAGATGACAGTTTCCTTGAA  1043

seq1  TATGTCCACATCCTCACTCACACATCAATAGTATATTAAACTTAGTGTGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCACATCCTCACTCACACATCAATAGTATATTAAACTTAGTGTGT  1093

seq1  CTGAATTC  1104
      ||||||||
seq2  CTGAATTC  1101