BAC Information

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BAC

Clone NameB6Ng01-264N06
Chromosome3 (Build37)
Map Location 72,924,024 - 73,052,070
singlet/doubletdoublet
Overlap genenone
Upstream gene2010204N08Rik, Slitrk3
Downstream geneBche, LOC667425, LOC619764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264N06.bB6Ng01-264N06.g
ACCGA068634GA068635
length9041,118
definitionB6Ng01-264N06.b B6Ng01-264N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,051,165 - 73,052,070)(72,924,024 - 72,925,132)
sequence
gaattccttctgtgttcctaactctgagttggtattttccaatgatttct
ttacttctcacatttcttatgcttccctgtacaatgaaattgtatcgtta
gaaggaaaaaaaaaaagtactttaatctgaaactagttaaatgattttat
caggtgctaaacccaagtataccaaacagagagtctggatttttaccgtt
ctgtggttgtaggaaaaacttcacacagtgtcatgtatttcagagacaaa
gagaagacactttgagaagacacaccctgtgattgaaagtataagaaaga
aaagatgtaactctttccatgggtattaggatcatccagagactgcccca
ccctgggaaccatatcataatcagccaccaaacacagacactattgcata
cgccagcaagatttgctgaaaggaccctgatatagctgtctcttgtgagg
ctatgccagtgcctggcaaatacagaagtggatggacgctcacagtcatc
tcttggatggaacacagggcccccagtggaggagctggagaaagtaccca
aggagctgaaggggtgtgtaactctataggaggaacagcaatatgaacta
gccattaccccctgagctcgtgtctctagctgaatatatagcagaagatg
gcctaaaatgccatcattgggagaagaggcccttggtcttgcaaagttta
tatgccccagtacaggggaatgccaggaccaggaagcaggagtgggtggg
ttgggaagcaaggcaggtcgggggagggtataggggactttgggagatag
cgttttaaatgtaaataaagaaaatatctagtaaataaaaattacacaaa
gatagaaaagatggggaattctttaagtctttccaatgcacaatctactc
ccct

gaattctctgacaacaggggaagcctgttatatctttaatatttttttgt
tagtacttttgttgagttctttcaccgtcttcttctacttctctttcctc
cctcccttcctcccttcgtctatccatcccttctccttgctgtccttctg
aatatcattttatcccttgagaaatactggttcaggtagaactttcaaca
caaattaggttacattcactgatgtttcatctattttgtgcaattgtttc
tgctcttcttgatacccaccccatttattttcttcccaagtgacagtgag
gttttcagttgtaatctgagtcaagcctgcagacacttgcttataatcct
agtactcagaaagatgtggcaggaggattaatagttcaaagctagccagg
catatccaggagatcccgtgtctgattacatgcttacactgtcctcccca
catacaattcacatcatgcttcccattgtttacaaaatccagctacacaa
gtttcctttctgtcctctgaacacaacagtgaggtttacacctgaggaat
ttgccttttttctttgtgtacttatacattctgtctgtttgtcagtggtt
tgtccttgcctatatttcacagttctaattcctccaatcttcactgaaat
gtcaccctgtgaggaagtcttctatgtaaatgcaaaacattttaaatagt
ccctttagcaactttacatttaacataaggtaatagtatgtattgggatc
ttcaatcactacaaatcacaaaactttgcatctattcttatatctacctc
acagaacatcgtttgggagcctggaaacactcttaatgttaaattgatga
aaaccaagttcatcatttcaggtaattggcaaattgaatgttgggcacat
actgtattcatattcagtcattttactaaatgctggggaataagatatta
aaaggaaacagaaaacataaagcagcctcagcttattgggggggctcatg
actagaggagataggacagggcatagtggaatagattatttataagttga
ggtggggattttaataggagagtcattttaaactgaagaaacttaaatca
aagcctttgtgaaggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_73051165_73052070
seq2: B6Ng01-264N06.b_42_945 (reverse)

seq1  AGGGTAGTAGAGTGCTGCATTTGGAAAGACTTAAAGACTTCCCCATCTTT  50
      |||| |||||| || |||| ||||||||||||||||| ||||||||||||
seq2  AGGGGAGTAGATTG-TGCA-TTGGAAAGACTTAAAGAATTCCCCATCTTT  48

seq1  TCTTTCTTTTTTTAATTTTTTTTTACTAGATATTTTCTTTATTTACATTT  100
      ||| ||||| | |||||||| |||||||||||||||||||||||||||||
seq2  TCTATCTTTGTGTAATTTTTATTTACTAGATATTTTCTTTATTTACATTT  98

seq1  TAAACGCTATCTCCCAAAGTCCCCTATACCCTCCCCCGACCTGCCTTGCT  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGCTATCTCCCAAAGTCCCCTATACCCTCCCCCGACCTGCCTTGCT  148

seq1  TCCCAACCCACCCACTCCTGCTTCCTGGTCCTGGCATTCCCCTGTACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACCCACCCACTCCTGCTTCCTGGTCCTGGCATTCCCCTGTACTGG  198

seq1  GGCATATAAACTTTGCAAGACCAAGGGCCTCTTCTCCCAATGATGGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATAAACTTTGCAAGACCAAGGGCCTCTTCTCCCAATGATGGCATT  248

seq1  TTAGGCCATCTTCTGCTATATATTCAGCTAGAGACACGAGCTCAGGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCATCTTCTGCTATATATTCAGCTAGAGACACGAGCTCAGGGGGT  298

seq1  AATGGCTAGTTCATATTGCTGTTCCTCCTATAGAGTTACACACCCCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTAGTTCATATTGCTGTTCCTCCTATAGAGTTACACACCCCTTCA  348

seq1  GCTCCTTGGGTACTTTCTCCAGCTCCTCCACTGGGGGCCCTGTGTTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTGGGTACTTTCTCCAGCTCCTCCACTGGGGGCCCTGTGTTCCAT  398

seq1  CCAAGAGATGACTGTGAGCGTCCATCCACTTCTGTATTTGCCAGGCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGATGACTGTGAGCGTCCATCCACTTCTGTATTTGCCAGGCACTG  448

seq1  GCATAGCCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGCAAATCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGCAAATCTTG  498

seq1  CTGGCGTATGCAATAGTGTCTGTGTTTGGTGGCTGATTATGATATGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGTATGCAATAGTGTCTGTGTTTGGTGGCTGATTATGATATGGTTC  548

seq1  CCAGGGTGGGGCAGTCTCTGGATGATCCTAATACCCATGGAAAGAGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGGGGCAGTCTCTGGATGATCCTAATACCCATGGAAAGAGTTAC  598

seq1  ATCTTTTCTTTCTTATACTTTCAATCACAGGGTGTGTCTTCTCAAAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCTTTCTTATACTTTCAATCACAGGGTGTGTCTTCTCAAAGTGT  648

seq1  CTTCTCTTTGTCTCTGAAATACATGACACTGTGTGAAGTTTTTCCTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTGTCTCTGAAATACATGACACTGTGTGAAGTTTTTCCTACAA  698

seq1  CCACAGAACGGTAAAAATCCAGACTCTCTGTTTGGTATACTTGGGTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAACGGTAAAAATCCAGACTCTCTGTTTGGTATACTTGGGTTTAG  748

seq1  CACCTGATAAAATCATTTAACTAGTTTCAGATTAAAGTACTTTTTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATAAAATCATTTAACTAGTTTCAGATTAAAGTACTTTTTTTTTT  798

seq1  TCCTTCTAACGATACAATTTCATTGTACAGGGAAGCATAAGAAATGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAACGATACAATTTCATTGTACAGGGAAGCATAAGAAATGTGAG  848

seq1  AAGTAAAGAAATCATTGGAAAATACCAACTCAGAGTTAGGAACACAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGAAATCATTGGAAAATACCAACTCAGAGTTAGGAACACAGAAG  898

seq1  GAATTC  906
      ||||||
seq2  GAATTC  904


seq1: chr3_72924024_72925132
seq2: B6Ng01-264N06.g_69_1186

seq1  GAATTCTCTGACAACAGGGGAAGCCTGTTATATCTTTAATATTTTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGACAACAGGGGAAGCCTGTTATATCTTTAATATTTTTTTGT  50

seq1  TAGTACTTTTGTTGAGTTCTTTCACCGTCTTCTTCTACTTCTCTTTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTTTTGTTGAGTTCTTTCACCGTCTTCTTCTACTTCTCTTTCCTC  100

seq1  CCTCCCTTCCTCCCTTCGTCTATCCATCCCTTCTCCTTGCTGTCCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTCCTCCCTTCGTCTATCCATCCCTTCTCCTTGCTGTCCTTCTG  150

seq1  AATATCATTTTATCCCTTGAGAAATACTGGTTCAGGTAGAACTTTCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTTTATCCCTTGAGAAATACTGGTTCAGGTAGAACTTTCAACA  200

seq1  CAAATTAGGTTACATTCACTGATGTTTCATCTATTTTGTGCAATTGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAGGTTACATTCACTGATGTTTCATCTATTTTGTGCAATTGTTTC  250

seq1  TGCTCTTCTTGATACCCACCCCATTTATTTTCTTCCCAAGTGACAGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCTTGATACCCACCCCATTTATTTTCTTCCCAAGTGACAGTGAG  300

seq1  GTTTTCAGTTGTAATCTGAGTCAAGCCTGCAGACACTTGCTTATAATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGTTGTAATCTGAGTCAAGCCTGCAGACACTTGCTTATAATCCT  350

seq1  AGTACTCAGAAAGATGTGGCAGGAGGATTAATAGTTCAAAGCTAGCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCAGAAAGATGTGGCAGGAGGATTAATAGTTCAAAGCTAGCCAGG  400

seq1  CATATCCAGGAGATCCCGTGTCTGATTACATGCTTACACTGTCCTCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCAGGAGATCCCGTGTCTGATTACATGCTTACACTGTCCTCCCCA  450

seq1  CATACAATTCACATCATGCTTCCCATTGTTTACAAAATCCAGCTACACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATTCACATCATGCTTCCCATTGTTTACAAAATCCAGCTACACAA  500

seq1  GTTTCCTTTCTGTCCTCTGAACACAACAGTGAGGTTTACACCTGAGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTTCTGTCCTCTGAACACAACAGTGAGGTTTACACCTGAGGAAT  550

seq1  TTGCCTTTTTTCTTTGTGTACTTATACATTCTGTCTGTTTGTCAGTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTTTTCTTTGTGTACTTATACATTCTGTCTGTTTGTCAGTGGTT  600

seq1  TGTCCTTGCCTATATTTCACAGTTCTAATTCCTCCAATCTTCACTGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTGCCTATATTTCACAGTTCTAATTCCTCCAATCTTCACTGAAAT  650

seq1  GTCACCCTGTGAGGAAGTCTTCTATGTAAATGCAAAACATTTTAAATAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCTGTGAGGAAGTCTTCTATGTAAATGCAAAACATTTTAAATAGT  700

seq1  CCCTTTAGCAACTTTACATTTAACATAAGGTAATAGTATGTATTGGGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAGCAACTTTACATTTAACATAAGGTAATAGTATGTATTGGGATC  750

seq1  TTCAATCACTACAAATCACAAAACTTTGCATCTATTCTTATATCTACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCACTACAAATCACAAAACTTTGCATCTATTCTTATATCTACCTC  800

seq1  ACAGAACATCGTTT-GGAGCCTGGAAACACTCTTAATGTTAAATTGATGA  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAGAACATCGTTTGGGAGCCTGGAAACACTCTTAATGTTAAATTGATGA  850

seq1  AAACCAAGTTCATCATTTCAGGTAATTGGCAAATTGAATGTTGGGCACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGTTCATCATTTCAGGTAATTGGCAAATTGAATGTTGGGCACAT  900

seq1  ACTGTATTCATATTCAGTCATTTTACTAAATGCTGGGGAATAAGATATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTCATATTCAGTCATTTTACTAAATGCTGGGGAATAAGATATTA  950

seq1  AAAAGAAACAAGAAAACATAAAGCAGCCTCAGC-TATT-GGGGTGCTCAT  997
      ||| ||||| ||||||||||||||||||||||| |||| |||| ||||||
seq2  AAAGGAAAC-AGAAAACATAAAGCAGCCTCAGCTTATTGGGGGGGCTCAT  999

seq1  GACTAGAGGAGATA-GACA-GGCATAGTG--ATAGATTA-TTATAAG-TG  1041
      |||||||||||||| |||| |||||||||  |||||||| ||||||| ||
seq2  GACTAGAGGAGATAGGACAGGGCATAGTGGAATAGATTATTTATAAGTTG  1049

seq1  AG--TGGGATTTTAATAGAAGAGGTCATTTTAAACTG-AGAAA-TTAAAT  1087
      ||   ||||||||||||| ||| |||||||||||||| ||||| ||||||
seq2  AGGTGGGGATTTTAATAGGAGA-GTCATTTTAAACTGAAGAAACTTAAAT  1098

seq1  CAAAAGCTTTTGTGAAAGGATT  1109
      | ||||| |||||| |||||||
seq2  C-AAAGCCTTTGTG-AAGGATT  1118


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