BAC Information

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BAC

Clone NameB6Ng01-264P22
Chromosome3 (Build37)
Map Location 98,978,888 - 99,136,760
singlet/doubletdoublet
Overlap geneWars2, Tbx15
Upstream geneLOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557
Downstream geneM6pr-ps, Spag17, LOC623045, Wdr3, Gdap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264P22.bB6Ng01-264P22.g
ACCGA068758GA068759
length1,1721,147
definitionB6Ng01-264P22.b B6Ng01-264P22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,135,585 - 99,136,760)(98,978,888 - 98,980,024)
sequence
gaattccataaaattttccaagtgagacttatgcttcttgtgcactgttt
gcagccacctctaagtgacaagggtttcacattagatgtggcttggaaga
cacacagagctctcttttcctctattcccatggctcctctgtcgacagtc
agcatctataccactgtctttccctctagctgagcaacaagggcccttga
gggaaaaatgtatctcccaaggctacttctagactctacaaaagcacccc
ttctcttcagcttcgtggcccatttttgcctttgcttcatgcgtcataga
gtagtcactctcaagggcataatttctcagttcattactaggtgaccttg
ttcaaccaaacttcgttatgtcttaggttcaaccaagcctctgagaactt
ctccttgtctcttacaaacaccgaaaacttgttggtattcttctccagga
atctaggaagcacaggcaagcctgatctctgcagcagatcacatggcccc
ttggatgtatggatgtaagcagcaattctgtcaaatcagaatctaacaga
agtaagcaggctcagatttgcatctgaattgcccttagcttttctaacta
atcacaaacttgatctttcttccagaattctccttgtgtatccaaaccta
gcccttggtttctggtctcctccttttgccacaggttggaatgagccttt
cttattcttttatttaattaattttttattgtttctttgtaattcatctc
ccactcatcagtgtggttttgcaactagcgaacagttttcaattaacact
gtacgcctggcactgtgaagaaagggatatctaaaaggataaacttggaa
aagcacagttcccggattgctgactcaatcaagagaatggcacaggaacc
taacacagtggagaaaaaaaatgccaatgtggtagcaggtaagattgtct
ggagattgtggcacaagtgtagggttgaatgagagggtgagaactttccc
tgaaagaagctgactctcaaccctacagcctctgtgctagctttaccacc
caacaggaagccttgaaaatgcacactctgatgcaggcagatcctgattg
gatctcttcagatccagttcatagatcatcactagatctctaggaaacga
agaaaggcctaaagggcaaatc
gaattctcctcctgaagcactgcctgttttcggtgtcattttggtctcat
taatcagcattgcagcaaggcagacactgtgctgtgtattttactgtccc
cagcacagcggctcctccatctctgcccccaggctgacgcattggggaaa
aggagagagggaaaccatcaatcttcccagttgctcgtgtcagcggcgag
tccttcccccttcctgttggctgtctctctcaccacctgtgtttagaatt
agcactgaagctgctgcccagatgaatgagaaccactgtccttgtcacct
gccctggcatgggccatcactcctcaatgaaacaagtacatcaagcagtt
atctcgagtgggaacagggaaggagagagagtcacatgtctaccttagac
gacttttaataacataaaattaaagtaggattcaggtcatatattttaga
aggttgacataatcattggctccaagaagtaaaagccaataattttcctg
agcaccatcctctcaggattgtttgcagccagagctgatgtacctggttc
aaggcctgtcggttatctcctatccattcgctactctctcaaccctcctg
agactcggtttgttcttttgtaaaataactacataggagcttttgcaagg
attgagacaccattcataacccttgttatgttgctattaccgaaagttct
cagcaaatgttagctagtgttggacctccttgctcaaataagaaagtagc
atcagacaggttaagtgatataggaattagaagacattgaaggaatttgg
gccctagcactctctgattcacaaaattcacatccttcaggttaccttca
ttgtttctagtgtatttatagtttacagatattaataacttaaaatatgc
agactgtataaaccactaaatactatgtttttatttcccaaggacataaa
acgaatatggctaactcatgtgggtataagacttctcaagttacaatgcc
agtcactcaagctgtatgcctccacagattgcactgtgcttttcttttaa
tttctttttaatttgatggcagaaaaatgattcctgcctcttaaaaacta
tacaagtttatccaaaattaatacaaagatccaaaagtccattgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99135585_99136760
seq2: B6Ng01-264P22.b_46_1217 (reverse)

seq1  GATTTGCCCTTTTGCCCTTTTCTTCTGTTTCTTAGGAGATCTAGTGGATG  50
      |||||||||||| | || ||||||| ||||| || |||||||||| ||||
seq2  GATTTGCCCTTTAGGCC-TTTCTTC-GTTTCCTA-GAGATCTAGT-GATG  46

seq1  ATCTAATGACTGGGTCTGGAAGGAGGATCC-ACCAGGATCTGCTTGCATC  99
      |||||   ||||| ||| ||||   ||||| | |||||||||| ||||| 
seq2  ATCTATGAACTGGATCT-GAAG--AGATCCAATCAGGATCTGCCTGCAT-  92

seq1  CAGAGTGTGCATCT--CAGGCTTCCTGTTGGGTGGTAAGCCTAGCACAGG  147
      |||||||||||| |   |||||||||||||||||||||  |||||||| |
seq2  CAGAGTGTGCATTTTCAAGGCTTCCTGTTGGGTGGTAAAGCTAGCACA-G  141

seq1  AGGCCTGTAGGGTTGAGAGTCAGCTTCTTTCAGGG-AAGTTCTCACCCTC  196
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGG-CTGTAGGGTTGAGAGTCAGCTTCTTTCAGGGAAAGTTCTCACCCTC  190

seq1  TCATTCAACCCTACACTTGTGCCACAATCTCCAGACAATCTTACCTGCTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAACCCTACACTTGTGCCACAATCTCCAGACAATCTTACCTGCTA  240

seq1  CCACATTGGCA-TTTTTTTCTCCACTGTGTTAGGTTCCTGTGCCATTCTC  295
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCACATTGGCATTTTTTTTCTCCACTGTGTTAGGTTCCTGTGCCATTCTC  290

seq1  TTGATTGAGTCAGCAATCC-GGAACTGTGCTTTTCCAAGTTTATCCTTTT  344
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGATTGAGTCAGCAATCCGGGAACTGTGCTTTTCCAAGTTTATCCTTTT  340

seq1  AGATATCCCTTTCTTCACAGTGCCAGGCGTACAGTGTTAATTGAAAACTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCCCTTTCTTCACAGTGCCAGGCGTACAGTGTTAATTGAAAACTG  390

seq1  TTCGCTAGTTGCAAAACCACACTGATGAGTGGGAGATGAATTACAAAGAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTAGTTGCAAAACCACACTGATGAGTGGGAGATGAATTACAAAGAA  440

seq1  ACAATAAAAAATTAATTAAATAAAAGAATAAGAAAGGCTCATTCCAACCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAAAATTAATTAAATAAAAGAATAAGAAAGGCTCATTCCAACCT  490

seq1  GTGGCAAAAGGAGGAGACCAGAAACCAAGGGCTAGGTTTGGATACACAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAAAGGAGGAGACCAGAAACCAAGGGCTAGGTTTGGATACACAAG  540

seq1  GAGAATTCTGGAAGAAAGATCAAGTTTGTGATTAGTTAGAAAAGCTAAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCTGGAAGAAAGATCAAGTTTGTGATTAGTTAGAAAAGCTAAGG  590

seq1  GCAATTCAGATGCAAATCTGAGCCTGCTTACTTCTGTTAGATTCTGATTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCAGATGCAAATCTGAGCCTGCTTACTTCTGTTAGATTCTGATTT  640

seq1  GACAGAATTGCTGCTTACATCCATACATCCAAGGGGCCATGTGATCTGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATTGCTGCTTACATCCATACATCCAAGGGGCCATGTGATCTGCT  690

seq1  GCAGAGATCAGGCTTGCCTGTGCTTCCTAGATTCCTGGAGAAGAATACCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATCAGGCTTGCCTGTGCTTCCTAGATTCCTGGAGAAGAATACCA  740

seq1  ACAAGTTTTCGGTGTTTGTAAGAGACAAGGAGAAGTTCTCAGAGGCTTGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTTCGGTGTTTGTAAGAGACAAGGAGAAGTTCTCAGAGGCTTGG  790

seq1  TTGAACCTAAGACATAACGAAGTTTGGTTGAACAAGGTCACCTAGTAATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTAAGACATAACGAAGTTTGGTTGAACAAGGTCACCTAGTAATG  840

seq1  AACTGAGAAATTATGCCCTTGAGAGTGACTACTCTATGACGCATGAAGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAAATTATGCCCTTGAGAGTGACTACTCTATGACGCATGAAGCA  890

seq1  AAGGCAAAAATGGGCCACGAAGCTGAAGAGAAGGGGTGCTTTTGTAGAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAAATGGGCCACGAAGCTGAAGAGAAGGGGTGCTTTTGTAGAGT  940

seq1  CTAGAAGTAGCCTTGGGAGATACATTTTTCCCTCAAGGGCCCTTGTTGCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGTAGCCTTGGGAGATACATTTTTCCCTCAAGGGCCCTTGTTGCT  990

seq1  CAGCTAGAGGGAAAGACAGTGGTATAGATGCTGACTGTCGACAGAGGAGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGAGGGAAAGACAGTGGTATAGATGCTGACTGTCGACAGAGGAGC  1040

seq1  CATGGGAATAGAGGAAAAGAGAGCTCTGTGTGTCTTCCAAGCCACATCTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAATAGAGGAAAAGAGAGCTCTGTGTGTCTTCCAAGCCACATCTA  1090

seq1  ATGTGAAACCCTTGTCACTTAGAGGTGGCTGCAAACAGTGCACAAGAAGC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAACCCTTGTCACTTAGAGGTGGCTGCAAACAGTGCACAAGAAGC  1140

seq1  ATAAGTCTCACTTGGAAAATTTTATGGAATTC  1176
      ||||||||||||||||||||||||||||||||
seq2  ATAAGTCTCACTTGGAAAATTTTATGGAATTC  1172

seq1: chr3_98978888_98980024
seq2: B6Ng01-264P22.g_68_1214

seq1  GAATTCTCCTCCTGAAGCACTGCCTGTTTTCGGTGTCATTTTGGTCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCTGAAGCACTGCCTGTTTTCGGTGTCATTTTGGTCTCAT  50

seq1  TAATCAGCATTGCAGCAAGGCAGACACTGTGCTGTGTATTTTACTGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGCATTGCAGCAAGGCAGACACTGTGCTGTGTATTTTACTGTCCC  100

seq1  CAGCACAGCGGCTCCTCCATCTCTGCCCCCAGGCTGACGCATTGGGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGCGGCTCCTCCATCTCTGCCCCCAGGCTGACGCATTGGGGAAA  150

seq1  AGGAGAGAGGGAAACCATCAATCTTCCCAGTTGCTCGTGTCAGCGGCGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAGGGAAACCATCAATCTTCCCAGTTGCTCGTGTCAGCGGCGAG  200

seq1  TCCTTCCCCCTTCCTGTTGGCTGTCTCTCTCACCACCTGTGTTTAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCCCTTCCTGTTGGCTGTCTCTCTCACCACCTGTGTTTAGAATT  250

seq1  AGCACTGAAGCTGCTGCCCAGATGAATGAGAACCACTGTCCTTGTCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAAGCTGCTGCCCAGATGAATGAGAACCACTGTCCTTGTCACCT  300

seq1  GCCCTGGCATGGGCCATCACTCCTCAATGAAACAAGTACATCAAGCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCATGGGCCATCACTCCTCAATGAAACAAGTACATCAAGCAGTT  350

seq1  ATCTCGAGTGGGAACAGGGAAGGAGAGAGAGTCACATGTCTACCTTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGAGTGGGAACAGGGAAGGAGAGAGAGTCACATGTCTACCTTAGAC  400

seq1  GACTTTTAATAACATAAAATTAAAGTAGGATTCAGGTCATATATTTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTAATAACATAAAATTAAAGTAGGATTCAGGTCATATATTTTAGA  450

seq1  AGGTTGACATAATCATTGGCTCCAAGAAGTAAAAGCCAATAATTTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGACATAATCATTGGCTCCAAGAAGTAAAAGCCAATAATTTTCCTG  500

seq1  AGCACCATCCTCTCAGGATTGTTTGCAGCCAGAGCTGATGTACCTGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATCCTCTCAGGATTGTTTGCAGCCAGAGCTGATGTACCTGGTTC  550

seq1  AAGGCCTGTCGGTTATCTCCTATCCATTCGCTACTCTCTCAACCCTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGTCGGTTATCTCCTATCCATTCGCTACTCTCTCAACCCTCCTG  600

seq1  AGACTCGGTTTGTTCTTTTGTAAAATAACTACATAGGAGCTTTTGCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCGGTTTGTTCTTTTGTAAAATAACTACATAGGAGCTTTTGCAAGG  650

seq1  ATTGAGACACCATTCATAACCCTTGTTATGTTGCTATTACCGAAAGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGACACCATTCATAACCCTTGTTATGTTGCTATTACCGAAAGTTCT  700

seq1  CAGCAAATGTTAGCTAGTGTTGGACCTCCTTGCTCAAATAAGAAAGTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATGTTAGCTAGTGTTGGACCTCCTTGCTCAAATAAGAAAGTAGC  750

seq1  ATCAGACAGGTTAAGTGATATAGGAATTAGAAGACATTGAAGGAATTT-G  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCAGACAGGTTAAGTGATATAGGAATTAGAAGACATTGAAGGAATTTGG  800

seq1  GCCCTAGCACTCTCTGATTCACAAAATTCACATCCTTCAGGTTACCTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGCACTCTCTGATTCACAAAATTCACATCCTTCAGGTTACCTTCA  850

seq1  TTGTTTCTAGTGTATTTATAGTTTACAGATATTAATAACTT-AAATATGC  898
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGTTTCTAGTGTATTTATAGTTTACAGATATTAATAACTTAAAATATGC  900

seq1  AGACTGTATAAACCACTAAATACTATGTTTTTATTTCCC-AGGACATAAA  947
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGACTGTATAAACCACTAAATACTATGTTTTTATTTCCCAAGGACATAAA  950

seq1  ACGAATATGGCT-ACTCATGTTGGTATAAGAC-TCTC-AGTTAC-ATGCC  993
      |||||||||||| |||||||| |||||||||| |||| |||||| |||||
seq2  ACGAATATGGCTAACTCATGTGGGTATAAGACTTCTCAAGTTACAATGCC  1000

seq1  AGTCACTCAAGCTGTATGC--TCACAGATTGGACTGTGCTTTCTTTTTAA  1041
      |||||||||||||||||||   ||||||||| ||||||||||  ||||||
seq2  AGTCACTCAAGCTGTATGCCTCCACAGATTGCACTGTGCTTTTCTTTTAA  1050

seq1  TTTCTTTTTTAATTTGATGGCAG-AAAATGATT-CTGCC-CTTAGAAAAC  1088
      |||| |||||||||||||||||| ||||||||| ||||| |||| |||||
seq2  TTTC-TTTTTAATTTGATGGCAGAAAAATGATTCCTGCCTCTTA-AAAAC  1098

seq1  TAATACAAG-TTAT-CAAAAATAATACAAAATATCAAAAAGTCCATTGTG  1136
      | ||||||| |||| ||||| |||||| ||| ||| ||||||||||||||
seq2  T-ATACAAGTTTATCCAAAATTAATAC-AAAGATCCAAAAGTCCATTGTG  1146

seq1  A  1137
      |
seq2  A  1147