BAC Information

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BAC

Clone NameB6Ng01-265A02
Chromosome3 (Build37)
Map Location 67,401,379 - 67,560,032
singlet/doubletdoublet
Overlap geneMfsd1, LOC667207, Gm412
Upstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1
Downstream geneEG208426, EG545531, LOC631379, Schip1, Il12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265A02.bB6Ng01-265A02.g
ACCGA068766GA068767
length1,1771,108
definitionB6Ng01-265A02.b B6Ng01-265A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,401,379 - 67,402,546)(67,558,911 - 67,560,032)
sequence
gaattcaaaccatactttatattaaaaatctgagacctattcttacttat
acatagctaaaatgacctccagtttctccgagcagcctcagctggccttg
gctcacagctgtccccgatccacaggcctgccactgccatgcttggctag
tgcctttggtattgaagaaaaggcagtctcacagagtctgacaagtgctg
gtgacagcagttctgtccctgctctgcctctcagttcagaactgatcatc
cagaggcagcagcagagtcaggtcactctgctgccttgattactcccttt
gtaattgaggaaaatcaggttgcctgaaaacttgggtaagaactttttgc
aagctaactgtgcccttgactggacagtgggcccagatagtttatgtata
tttatatcacaaggtaaaatggctagaacagtggagggtactgatagaag
cccacgactgtcctttgtatttaaagtgttagtctaattatagtaactag
gtgtgtactgttttagctagtatgtcacttgtcacctgatgcatactgta
ctgctctgtcttcccatctagtgtctcctggggttctcctactcattgct
ggcctgtgcattgtggccaatggtggcattcatagttcctgaacaccagc
tggggactgcatatggattgtaagtactgcatttttaccacagatcgcac
atgcgccttctgctgtgttatcagttatcgtaacatcctgtgtgttctaa
tgctcagagttctggcaagctctgaacctgcacatgatttaggatcgtca
gttaatccatttaagcaggtgtcgtgtgcggtgtttctggtcactttccc
taattgtgatctgaggaagacaatccaatgaaggagggctcatttttagc
ccctggttttagagatttcagtattgcttctattgattctgggccctgtg
gtgaggcagatccgcccaccggcagccaggagaacagatgtgcagttcat
gtgtttgcctcacacatacatatgtctgtactgagtaggccctgtatttc
ctttcctcatccctccagtcagggttcttctaaggcagcgaagtttaata
gtatgcatctcttctctatacgaaaaggcaacctacctggactgaacttc
cagaccgtgctccagctattcactgtt

gaattctcaggatctagaactcatttatcagtgcaaacagggtgagaata
cctctatgaagaaagcaagctagttaatagggttccactggagaaaagga
gaagggatgggcagctgagagaatagggaaacatgcttgaaaatgcaaag
cagaaatgtaaatgaagaaaataactaataaaaaattgggaagaaaaaaa
gaaaaaagaaaatgcaaagtagagcatcccagtaggatgttcatcaggtc
aaagcagtccataaaccccaatgcaggtgttaaaagatcttagcaatgtc
aacctcctggttatggcatagttctagagtaattaatgcaagatgttacc
ttgtcactgagagagatggttgaagggcatgagagactattctccaacgt
acccttatgttgtgtccggccagcagatcacaggtctgggttctagcctg
gaaaggcattttggaaacctggaagagaagaggggctaggcggcaagaga
aagatgcagctaagacagtcatcctgatcaaagctcaattttactaatcc
gcacgcagttatgaagcaggggaaggggacccgattcctgccaaataatc
ttggagtccagtagcagggtgaccacgtgtatggctccagaacagcaaag
tggtaggctccagcagtgggcgtggcagaacgattgagcaggaagctcca
tcctgatgtaaacagtggaaccttggcaggcaggtttcaggctgggggag
gggaggctacatccttaaacaacatgctaacactggagaaggggtgggca
ggatctttttatataggcttggctctcttggaactcactgcatggtccag
gctggcctcatactcacagagatctgcctgcctctgccaactgagtgctg
ggattaagctgcatgtcactatacctgacatgtaaatcatttctcaaaac
gggggaaacttggcattgagtgagatgctattacttattttattgcagac
attcacataatgctatttgtagtacaaaatgttataagacacctactatc
ctaatgtataaataggttcacattaagatgatgaatctacactcaaagtt
actatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_67401379_67402546
seq2: B6Ng01-265A02.b_45_1221

seq1  GAATTCAAACCATACTTTATATTAAAAATCTGAGACCTATTCTTACTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCATACTTTATATTAAAAATCTGAGACCTATTCTTACTTAT  50

seq1  ACATAGCTAAAATGACCTCCAGTTTCTCCGAGCAGCCTCAGCTGGCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCTAAAATGACCTCCAGTTTCTCCGAGCAGCCTCAGCTGGCCTTG  100

seq1  GCTCACAGCTGTCCCCGATCCACAGGCCTGCCACTGCCATGCTTGGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGCTGTCCCCGATCCACAGGCCTGCCACTGCCATGCTTGGCTAG  150

seq1  TGCCTTTGGTATTGAAGAAAAGGCAGTCTCACAGAGTCTGACAAGTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGGTATTGAAGAAAAGGCAGTCTCACAGAGTCTGACAAGTGCTG  200

seq1  GTGACAGCAGTTCTGTCCCTGCTCTGCCTCTCAGTTCAGAACTGATCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGCAGTTCTGTCCCTGCTCTGCCTCTCAGTTCAGAACTGATCATC  250

seq1  CAGAGGCAGCAGCAGAGTCAGGTCACTCTGCTGCCTTGATTACTCCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGCAGCAGAGTCAGGTCACTCTGCTGCCTTGATTACTCCCTTT  300

seq1  GTAATTGAGGAAAATCAGGTTGCCTGAAAACTTGGGTAAGAACTTTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAGGAAAATCAGGTTGCCTGAAAACTTGGGTAAGAACTTTTTGC  350

seq1  AAGCTAACTGTGCCCTTGACTGGACAGTGGGCCCAGATAGTTTATGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAACTGTGCCCTTGACTGGACAGTGGGCCCAGATAGTTTATGTATA  400

seq1  TTTATATCACAAGGTAAAATGGCTAGAACAGTGGAGGGTACTGATAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCACAAGGTAAAATGGCTAGAACAGTGGAGGGTACTGATAGAAG  450

seq1  CCCACGACTGTCCTTTGTATTTAAAGTGTTAGTCTAATTATAGTAACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGACTGTCCTTTGTATTTAAAGTGTTAGTCTAATTATAGTAACTAG  500

seq1  GTGTGTACTGTTTTAGCTAGTATGTCACTTGTCACCTGATGCATACTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACTGTTTTAGCTAGTATGTCACTTGTCACCTGATGCATACTGTA  550

seq1  CTGCTCTGTCTTCCCATCTAGTGTCTCCTGGGGTTCTCCTACTCATTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGTCTTCCCATCTAGTGTCTCCTGGGGTTCTCCTACTCATTGCT  600

seq1  GGCCTGTGCATTGTGGCCAATGGTGGCATTCATAGTTCCTGAACACCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGCATTGTGGCCAATGGTGGCATTCATAGTTCCTGAACACCAGC  650

seq1  TGGGGACTGCATATGGATTGTAAGTACTGCATTTTTACCACAGATCGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTGCATATGGATTGTAAGTACTGCATTTTTACCACAGATCGCAC  700

seq1  ATGCGCCTTCTGCTGTGTTATCAGTTATCGTAACATCCTGTGTGTTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCCTTCTGCTGTGTTATCAGTTATCGTAACATCCTGTGTGTTCTAA  750

seq1  TGCTCAGAGTTCTGGCAAGCTCTGAACCTGCACATGATTTAGGATCGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGAGTTCTGGCAAGCTCTGAACCTGCACATGATTTAGGATCGTCA  800

seq1  GTTAATCCATTTAAGCAGGTGTCGTGTGCGGTGTTTCTGGTCACTTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCCATTTAAGCAGGTGTCGTGTGCGGTGTTTCTGGTCACTTTCCC  850

seq1  TAATTGTGATCTGAGGAAGACAATCCAATGAAGGAGGGCTCA-TTTTAGC  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAATTGTGATCTGAGGAAGACAATCCAATGAAGGAGGGCTCATTTTTAGC  900

seq1  CCCTGGTTTTAGAGATTTCAGTATTTGCTCTATTGATTCTGGG-CCTGTG  948
      |||||||||||||||||||||||||   ||||||||||||||| ||||||
seq2  CCCTGGTTTTAGAGATTTCAGTATTGCTTCTATTGATTCTGGGCCCTGTG  950

seq1  GTGAGGCAGATCCGCC--ACGGCAGCCAGGAAGACAGATGTGCAG-TCAT  995
      ||||||||||||||||   ||||||||||||  |||||||||||| ||||
seq2  GTGAGGCAGATCCGCCCACCGGCAGCCAGGAGAACAGATGTGCAGTTCAT  1000

seq1  GTGTTTG-CTCACACATACATATGTCTGTACTGAGTAAGGCCTGTA-TTC  1043
      ||||||| ||||||||||||||||||||||||||||| | |||||| |||
seq2  GTGTTTGCCTCACACATACATATGTCTGTACTGAGTAGGCCCTGTATTTC  1050

seq1  CTTTCCTCAT-CCTTCAGTCAGGGTTC-TCTAAAGCAGCAGAGTTT-ATA  1090
      |||||||||| ||| |||||||||||| ||||| |||||  ||||| |||
seq2  CTTTCCTCATCCCTCCAGTCAGGGTTCTTCTAAGGCAGCGAAGTTTAATA  1100

seq1  GAATGCATCTC-TCTCTATACAGAAAAAAGCAAACTTACTGGAGTG-ACT  1138
      | ||||||||| |||||||||   |||| |||| ||  ||||| || |||
seq2  GTATGCATCTCTTCTCTATAC--GAAAAGGCAACCTACCTGGACTGAACT  1148

seq1  TTCAGACTGTGGTCCAGCTAATCCACTGTT  1168
      | ||||| ||| ||||||| || |||||||
seq2  TCCAGACCGTGCTCCAGCT-ATTCACTGTT  1177


seq1: chr3_67558911_67560032
seq2: B6Ng01-265A02.g_68_1175 (reverse)

seq1  CACATAGTAAATTTTGAGTGTAGATATCATCATCTTTATGGTGAACTAAT  50
      |||||||| || ||||||||||||| |||||||||| || ||||||  | 
seq2  CACATAGT-AACTTTGAGTGTAGAT-TCATCATCTTAAT-GTGAACCTA-  46

seq1  TTTATAACATTAGATAATTAGGTGGTCTTATAACATTTTGTAACTACAAA  100
      ||||| |||||||   | ||||| ||||||||||||||||| ||||||||
seq2  TTTAT-ACATTAGGATAGTAGGT-GTCTTATAACATTTTGT-ACTACAAA  93

seq1  TAGCATTATGTGAATGTCCTTGCAATAAAATAAGTTATTAGCATCTCCAC  150
      ||||||||||||||||||  |||||||||||||| || |||||||||   
seq2  TAGCATTATGTGAATGTC--TGCAATAAAATAAG-TAATAGCATCTC--A  138

seq1  CTCAATGCCCAAGTTTTCCCCGTTTTGAGAAATGATTTACATGTCAGGTA  200
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  CTCAATG-CCAAGTTTCCCCCGTTTTGAGAAATGATTTACATGTCAGGTA  187

seq1  TAGTGACATGCAGCTTTAATCCCAGCACTCAGTTGGCAGAGGCAGGCAGA  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAGTGACATGCAGC-TTAATCCCAGCACTCAGTTGGCAGAGGCAGGCAGA  236

seq1  TCTCTGTGAGTATGAGGCCAGCCTGGACCATGCAGTGAGTTCCAAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGAGTATGAGGCCAGCCTGGACCATGCAGTGAGTTCCAAGAGAG  286

seq1  CCAAGCCTATATAAAAAGATCCTGCCCACCCCTTCTCCAGTGTTAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTATATAAAAAGATCCTGCCCACCCCTTCTCCAGTGTTAGCATG  336

seq1  TTGTTTAAGGATGTAGCCTCCCCTCCCCCAGCCTGAAACCTGCCTGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAGGATGTAGCCTCCCCTCCCCCAGCCTGAAACCTGCCTGCCAA  386

seq1  GGTTCCACTGTTTACATCAGGATGGAGCTTCCTGCTCAATCGTTCTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCACTGTTTACATCAGGATGGAGCTTCCTGCTCAATCGTTCTGCCA  436

seq1  CGCCCACTGCTGGAGCCTACCACTTTGCTGTTCTGGAGCCATACACGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACTGCTGGAGCCTACCACTTTGCTGTTCTGGAGCCATACACGTGG  486

seq1  TCACCCTGCTACTGGACTCCAAGATTATTTGGCAGGAATCGGGTCCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGCTACTGGACTCCAAGATTATTTGGCAGGAATCGGGTCCCCTT  536

seq1  CCCCTGCTTCATAACTGCGTGCGGATTAGTAAAATTGAGCTTTGATCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTTCATAACTGCGTGCGGATTAGTAAAATTGAGCTTTGATCAGG  586

seq1  ATGACTGTCTTAGCTGCATCTTTCTCTTGCCGCCTAGCCCCTCTTCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTCTTAGCTGCATCTTTCTCTTGCCGCCTAGCCCCTCTTCTCTT  636

seq1  CCAGGTTTCCAAAATGCCTTTCCAGGCTAGAACCCAGACCTGTGATCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTCCAAAATGCCTTTCCAGGCTAGAACCCAGACCTGTGATCTGC  686

seq1  TGGCCGGACACAACATAAGGGTACGTTGGAGAATAGTCTCTCATGCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGGACACAACATAAGGGTACGTTGGAGAATAGTCTCTCATGCCCTT  736

seq1  CAACCATCTCTCTCAGTGACAAGGTAACATCTTGCATTAATTACTCTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCTCTCTCAGTGACAAGGTAACATCTTGCATTAATTACTCTAGA  786

seq1  ACTATGCCATAACCAGGAGGTTGACATTGCTAAGATCTTTTAACACCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCCATAACCAGGAGGTTGACATTGCTAAGATCTTTTAACACCTGC  836

seq1  ATTGGGGTTTATGGACTGCTTTGACCTGATGAACATCCTACTGGGATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGTTTATGGACTGCTTTGACCTGATGAACATCCTACTGGGATGCT  886

seq1  CTACTTTGCATTTTCTTTTTTCTTTTTTTCTTCCCAATTTTTTATTAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGCATTTTCTTTTTTCTTTTTTTCTTCCCAATTTTTTATTAGTT  936

seq1  ATTTTCTTCATTTACATTTCTGCTTTGCATTTTCAAGCATGTTTCCCTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCATTTACATTTCTGCTTTGCATTTTCAAGCATGTTTCCCTAT  986

seq1  TCTCTCAGCTGCCCATCCCTTCTCCTTTTCTCCAGTGGAACCCTATTAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGCTGCCCATCCCTTCTCCTTTTCTCCAGTGGAACCCTATTAAC  1036

seq1  TAGCTTGCTTTCTTCATAGAGGTATTCTCACCCTGTTTGCACTGATAAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGCTTTCTTCATAGAGGTATTCTCACCCTGTTTGCACTGATAAAT  1086

seq1  GAGTTCTAGATCCTGAGAATTC  1122
      ||||||||||||||||||||||
seq2  GAGTTCTAGATCCTGAGAATTC  1108


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