BAC Information

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BAC

Clone NameB6Ng01-265D16
Chromosome3 (Build37)
Map Location 117,682,140 - 117,796,581
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265D16.bB6Ng01-265D16.g
ACCGA068933GA068934
length1,1441,165
definitionB6Ng01-265D16.b B6Ng01-265D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,795,449 - 117,796,581)(117,682,140 - 117,683,309)
sequence
gaattccattttcttcacatggataaatgatatatctctatttctatatg
tatatgtatatgtatatgtatatgtaattcctctttacaaatgcatatat
cctgactgcttgtttattttagaactggaacatagcacgtatccaataaa
tacatattaaccaaatgagtataagttgtgaatgagcctcagtcttctat
ctgcaaatctttcatatttgctatggggatatataagatacgggtcataa
aggtctttgcttagtgccaggaactacaaatgctctctataaattatagc
caaaataaaagtaaaaacaagatgaccacatgtaatttccttcttcttta
aatagcatcccagagtcagtctacagagttgatgattgttgttgttgttt
tgttattgttgcaactagcagagttctaaggtagatagacaggtggggtt
aggggtagattaaacagaaaatgaagaatgaaggttaagttcaagcccaa
aatagatctctcatagcaaacttcagagagaatctggtcttccagtcgct
cacagcaggcactgcagggcggcaggctttctgagtctgcagggatcagg
agccactacacacagagcagactggagattccactttccattcaaaggca
tgtcacagaaacaacaggtgaaagaggctgagctctgagtatacaaccaa
tcccttcattctatctcactagtcaggtaaaaaaactctttgaatatagt
aaagagacaggttaatgaaaaggcaaaaatttcaagtcaaatggaaatcc
acccaaaagtaaagagacatcaaggggctggaaagatggctctgttggta
aaatacttcatatggaagcctgaagatcttaatttgctccccagcacata
catcctcagcaattctagggatgtgaagacattagaattcctgaagtttg
ctggccagccagcccaactgtaggggttaaacctcctagggctcaaacaa
gagaccttgtttttaataacagaagatgctggcaccacagcctttgttac
caggtacttaggatacagaaagaccttggatttctggtgagctcaggata
acctgacttttggcctctgtatttgtttatacaccattcttatg

gaattctcagaaatcaccccatcagatcttgcagcacttacagtgagaac
gtactttttcttcctcctttaagaaatgagtgttatggtgacatgaaggg
catctcctcactagcaatccattgttacctcttactttgtaaaagggaag
aaagaatttctacttacttcccttaatttttttttatctccagctaaata
tatccagcaatctggctccaacctccagccactactaacactgttaaacc
tctcctcctgtaacatttcttttagcatttatctgcacaatgcactagac
atttggtctcccagtctggtagtgtcaagtaagagttggggccaaataca
ggtgtgatgtcaggggggtcttctactctgggaaagaattgatcttgatt
tctgagagtttgttagttcccattaaaggaaaattaggtaaaaagaactc
ccatattttctttcaccaaaatggcatttacagtgaagcctttaccagaa
tcaagtggttcctacttccaagcatttgaatatccaggacagttaccaaa
aacaaacttcttataaggcgtatagccatgggtattttattatagccaca
gaaaacaaaacaaaacactttcctcagtacatcaaaaacgattgatggtt
atttatgctttccatttaaaggtttttatctcctgtttgaaaaagctata
ggtatagcaaatattgggtaattacaaatgtgataatataaaaaaatata
tagatcttttcccaggggcctgtggattctgattaggttcctaaaagaca
gatttgtgtgaatgtgttcagactcagcaatccgacttcattaaaagcac
aggagatgtttagataccagaactactttacttatctttttatataaaat
acattttgtaagactactttcaggctttgcctttgggttgagaaaataat
gatgtatatttagacagagatttttctcagggtattatactttggaacat
taaatagtatgtcatctcttttcagattgaacattatttgtgtgacattg
tcagaggatgttattatgttttcttaaaataggaggtcaaagaaacattt
ttatattgatgaatctggagccatgaagtacaatatattttccgaaatta
ttgggtggcaatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117795449_117796581
seq2: B6Ng01-265D16.b_47_1190 (reverse)

seq1  CATAAGAAT-GTGTATAAACATATACAGAGGCCAAAAGTCAGGTTAATCT  49
      ||||||||| ||||||||||| ||||||||||||||||||||||| ||| 
seq2  CATAAGAATGGTGTATAAACAAATACAGAGGCCAAAAGTCAGGTT-ATCC  49

seq1  TGAACTCA-CAGAAATCCAA-GTCTTTCTGTATCCTAAGTA-CTGGTACC  96
      ||| |||| ||||||||||| |||||||||||||||||||| |||||| |
seq2  TGAGCTCACCAGAAATCCAAGGTCTTTCTGTATCCTAAGTACCTGGTAAC  99

seq1  AAA-GCTGT-GTGCCAGCATC-TCTGTTATTAAAAACAAGGTCTCTT-TT  142
      ||| ||||| ||||||||||| ||||||||||||||||||||||||| ||
seq2  AAAGGCTGTGGTGCCAGCATCTTCTGTTATTAAAAACAAGGTCTCTTGTT  149

seq1  TGAG-CCTA-GAG--TTTACCCCTACAGTTGGGCTGGCTGGCCAGCAAAC  188
      |||| |||| |||  || ||||||||||||||||||||||||||||||||
seq2  TGAGCCCTAGGAGGTTTAACCCCTACAGTTGGGCTGGCTGGCCAGCAAAC  199

seq1  TTCAGGAATTCTAATGTCTTCACATCCCTAGAATTGCTGAGGATGTATGT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAATTCTAATGTCTTCACATCCCTAGAATTGCTGAGGATGTATGT  249

seq1  GCTGGGGAGCAAATTAAGATCTTCAGGCTTCCATATGAAGTATTTTACCA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGAGCAAATTAAGATCTTCAGGCTTCCATATGAAGTATTTTACCA  299

seq1  ACAGAGCCATCTTTCCAGCCCCTTGATGTCTCTTTACTTTTGGGTGGATT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCATCTTTCCAGCCCCTTGATGTCTCTTTACTTTTGGGTGGATT  349

seq1  TCCATTTGACTTGAAATTTTTGCCTTTTCATTAACCTGTCTCTTTACTAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGACTTGAAATTTTTGCCTTTTCATTAACCTGTCTCTTTACTAT  399

seq1  ATTCAAAGAGTTTTTTTACCTGACTAGTGAGATAGAATGAAGGGATTGGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGAGTTTTTTTACCTGACTAGTGAGATAGAATGAAGGGATTGGT  449

seq1  TGTATACTCAGAGCTCAGCCTCTTTCACCTGTTGTTTCTGTGACATGCCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACTCAGAGCTCAGCCTCTTTCACCTGTTGTTTCTGTGACATGCCT  499

seq1  TTGAATGGAAAGTGGAATCTCCAGTCTGCTCTGTGTGTAGTGGCTCCTGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGGAAAGTGGAATCTCCAGTCTGCTCTGTGTGTAGTGGCTCCTGA  549

seq1  TCCCTGCAGACTCAGAAAGCCTGCCGCCCTGCAGTGCCTGCTGTGAGCGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCAGACTCAGAAAGCCTGCCGCCCTGCAGTGCCTGCTGTGAGCGA  599

seq1  CTGGAAGACCAGATTCTCTCTGAAGTTTGCTATGAGAGATCTATTTTGGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGACCAGATTCTCTCTGAAGTTTGCTATGAGAGATCTATTTTGGG  649

seq1  CTTGAACTTAACCTTCATTCTTCATTTTCTGTTTAATCTACCCCTAACCC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTTAACCTTCATTCTTCATTTTCTGTTTAATCTACCCCTAACCC  699

seq1  CACCTGTCTATCTACCTTAGAACTCTGCTAGTTGCAACAATAACAAAACA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTCTATCTACCTTAGAACTCTGCTAGTTGCAACAATAACAAAACA  749

seq1  ACAACAACAATCATCAACTCTGTAGACTGACTCTGGGATGCTATTTAAAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAATCATCAACTCTGTAGACTGACTCTGGGATGCTATTTAAAG  799

seq1  AAGAAGGAAATTACATGTGGTCATCTTGTTTTTACTTTTATTTTGGCTAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAAATTACATGTGGTCATCTTGTTTTTACTTTTATTTTGGCTAT  849

seq1  AATTTATAGAGAGCATTTGTAGTTCCTGGCACTAAGCAAAGACCTTTATG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATAGAGAGCATTTGTAGTTCCTGGCACTAAGCAAAGACCTTTATG  899

seq1  ACCCGTATCTTATATATCCCCATAGCAAATATGAAAGATTTGCAGATAGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTATCTTATATATCCCCATAGCAAATATGAAAGATTTGCAGATAGA  949

seq1  AGACTGAGGCTCATTCACAACTTATACTCATTTGGTTAATATGTATTTAT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGGCTCATTCACAACTTATACTCATTTGGTTAATATGTATTTAT  999

seq1  TGGATACGTGCTATGTTCCAGTTCTAAAATAAACAAGCAGTCAGGATATA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACGTGCTATGTTCCAGTTCTAAAATAAACAAGCAGTCAGGATATA  1049

seq1  TGCATTTGTAAAGAGGAATTACATATACATATACATATACATATACATAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGTAAAGAGGAATTACATATACATATACATATACATATACATAT  1099

seq1  AGAAATAGAGATATATCATTTATCCATGTGAAGAAAATGGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGAGATATATCATTTATCCATGTGAAGAAAATGGAATTC  1144


seq1: chr3_117682140_117683309
seq2: B6Ng01-265D16.g_65_1229

seq1  GAATTCTCAGAAATCACCCCATCAGATCTTGCAGCACTTACAGTGAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAAATCACCCCATCAGATCTTGCAGCACTTACAGTGAGAAC  50

seq1  GTACTTTTTCTTCCTCCTTTAAGAAATGAGTGTTATGGTGACATGAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTTCTTCCTCCTTTAAGAAATGAGTGTTATGGTGACATGAAGGG  100

seq1  CATCTCCTCACTAGCAATCCATTGTTACCTCTTACTTTGTAAAAGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTCACTAGCAATCCATTGTTACCTCTTACTTTGTAAAAGGGAAG  150

seq1  AAAGAATTTCTACTTACTTCCCTTAATTTTTTTTTATCTCCAGCTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTTCTACTTACTTCCCTTAATTTTTTTTTATCTCCAGCTAAATA  200

seq1  TATCCAGCAATCTGGCTCCAACCTCCAGCCACTACTAACACTGTTAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGCAATCTGGCTCCAACCTCCAGCCACTACTAACACTGTTAAACC  250

seq1  TCTCCTCCTGTAACATTTCTTTTAGCATTTATCTGCACAATGCACTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCTGTAACATTTCTTTTAGCATTTATCTGCACAATGCACTAGAC  300

seq1  ATTTGGTCTCCCAGTCTGGTAGTGTCAAGTAAGAGTTGGGGCCAAATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTCTCCCAGTCTGGTAGTGTCAAGTAAGAGTTGGGGCCAAATACA  350

seq1  GGTGTGATGTCAGGGGGGTCTTCTACTCTGGGAAAGAATTGATCTTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATGTCAGGGGGGTCTTCTACTCTGGGAAAGAATTGATCTTGATT  400

seq1  TCTGAGAGTTTGTTAGTTCCCATTAAAGGAAAATTAGGTAAAAAGAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGTTTGTTAGTTCCCATTAAAGGAAAATTAGGTAAAAAGAACTC  450

seq1  CCATATTTTCTTTCACCAAAATGGCATTTACAGTGAAGCCTTTACCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTTCTTTCACCAAAATGGCATTTACAGTGAAGCCTTTACCAGAA  500

seq1  TCAAGTGGTTCCTACTTCCAAGCATTTGAATATCCAGGACAGTTACCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGGTTCCTACTTCCAAGCATTTGAATATCCAGGACAGTTACCAAA  550

seq1  AACAAACTTCTTATAAGGCGTATAGCCATGGGTATTTTATTATAGCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTTCTTATAAGGCGTATAGCCATGGGTATTTTATTATAGCCACA  600

seq1  GAAAACAAAACAAAACACTTTCCTCAGTACATCAAAAACGATTGATGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAAACAAAACACTTTCCTCAGTACATCAAAAACGATTGATGGTT  650

seq1  ATTTATGCTTTCCATTTAAAGGTTTTTATCTCCTGTTTGAAAAAGCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCTTTCCATTTAAAGGTTTTTATCTCCTGTTTGAAAAAGCTATA  700

seq1  GGTATAGCAAATATTGGGTAATTACAAATGTGATAATATAAAAAAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGCAAATATTGGGTAATTACAAATGTGATAATATAAAAAAATATA  750

seq1  TAGATCTTTTCCCAGGGGCCTGTGGATTCTGATTAGGTTCCTAAAAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTTTTCCCAGGGGCCTGTGGATTCTGATTAGGTTCCTAAAAGACA  800

seq1  GATTTGTGTGAATGTGTTCAGACTCAGCAATCCGACTTCATTAAAAGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTGTGAATGTGTTCAGACTCAGCAATCCGACTTCATTAAAAGCAC  850

seq1  AGGAGATGTTTAGATACCAGAACTACTTTACTTATCTTTTTATATAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGAGATGTTTAGATACCAGAACTACTTTACTTATCTTTTTATAT-AAAA  899

seq1  TACATTTTGTAAGACTACTTTCAGGGCTTTGCCTTT-GGTTGAGAAAAAT  949
      ||||||||||||||||||||||| |||||||||||| ||||||| |||||
seq2  TACATTTTGTAAGACTACTTTCA-GGCTTTGCCTTTGGGTTGAG-AAAAT  947

seq1  AATGATGTATATTTAGACAGAGATTTTTCTCAGGGGTAATTATACTTTGG  999
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  AATGATGTATATTTAGACAGAGATTTTTCTCAGGG--TATTATACTTTGG  995

seq1  AACATTAAATAAGTTATGTCATCTCTTTTTCAGATTG-ACATTATTTGTG  1048
      |||||||||||   ||||||||||| ||||||||||| ||||||||||||
seq2  AACATTAAATA--GTATGTCATCTC-TTTTCAGATTGAACATTATTTGTG  1042

seq1  TGACATTGTCAGAGGATGT--ATATGTTTCTTTAAAAATAGGAGGGGAAA  1096
      |||||||||||||||||||   ||||||| | | |||||||||||  |||
seq2  TGACATTGTCAGAGGATGTTATTATGTTT-TCTTAAAATAGGAGGTCAAA  1091

seq1  GAAACATTTTTATATTGATG-ATCTGAAG-CATGAGAGGTACATATATAT  1144
      |||||||||||||||||||| ||||| || |||  || ||||| ||||||
seq2  GAAACATTTTTATATTGATGAATCTGGAGCCAT--GAAGTACA-ATATAT  1138

seq1  TTTCCGAAATATATGGGTGGC-ATGCC  1170
      ||||||||||   |||||||| |||||
seq2  TTTCCGAAATTATTGGGTGGCAATGCC  1165


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