BAC Information

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BAC

Clone NameB6Ng01-266A21
Chromosome3 (Build37)
Map Location 148,536,085 - 148,667,619
singlet/doubletdoublet
Overlap geneLphn2, LOC100040368
Upstream geneLOC100040354
Downstream geneLOC668893, EG381483, LOC100040620
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266A21.bB6Ng01-266A21.g
ACCGA069547GA069548
length1,170325
definitionB6Ng01-266A21.b B6Ng01-266A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,536,085 - 148,537,258)(148,667,295 - 148,667,619)
sequence
gaattcagtccatgtttttgaagaatgacattgatgataaatggctaacc
tggctacttctgcttggttaacaaaaaaagcagacaaccaagtctccttt
gatcagtttacccgatctggtataattctgccaatttgcacaaaatttta
tattgtgaaaaaaacagtaaacaatatgtaggtaatttatttgttggggg
aagtaccctttagtctggttctatcattcctatacttgtcctcttcgtgc
aaactgaggagaaaatattctacacacagtatgttatgactccaggagca
ggggagagccaatgcaaagatgtgtgcaagccgagtgggtactcaaggca
ggcaagaaagggagacagagatcatagccaagacttaggtggcagtcatt
ttcccaggtcaggagggaaatctgagtgcccactcaagcatctctctgtt
ctaaaataaagcttacaaggaaatgcctcgttaccatctaaactttcaca
gtgtttcgggaacagagcctgctttctctaagtatttattaatcatgata
ggacagcttaactaggtaaacatggcatcaggaggttaaatgatgtggag
ttagcatggcaagaagaaggtgttctataggctagccccatttgtcacgg
aaccatgttctcatgacttagtaatttgtgttacctagaagagctctacc
tcacagaactgaattccttcggcgtgttaggcaattacttagatgaatta
tagcatattgtcttatttaatgcatttcaaaaacagagctgctattgtac
cagaagcatgctagagtacccatgcttgtgatacacaaacaaataatttg
gaaaaacaaagtaattcaaattgtattccacttcattttctacatattat
ggaaatttttaatataatcctagttttccaaagttatagttattaaatct
ttgaaactctatctatctatctatctatctatctatctatctatctatct
atctatctatctatctgcctccatatctatctctatagaagtacatttat
aagttgagtaatacgaaatgcctgtatagacgaaaggtaaaggaaccatc
agaaaggttctggtaaatgaaccaatgtttacaacaagttctagttaagt
tcaatgctatcattgttgta

ttcattgaggaggtgcaatagagttgggaaggaaggatgtctctgtggga
gtggtaatcctggagtgaaattacttactgttgagaggagaagacagaga
aagaccctaggatgtcagggccaggtatggaggaggagtaactggccggc
tttggattcagtgagttctccctggcctcattaggtgttgttctcagtat
tggcaatctcttaagagcttccccatttctgttgctcttggaaagttgga
aggcacacttggctcagtgttagaacacacagcatgcataagactcttgg
agagaagtggggggttggggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148536085_148537258
seq2: B6Ng01-266A21.b_46_1215

seq1  GAATTCAGTCCATGTTTTTGAAGAATGACATTGATGATAAATGGCTAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCATGTTTTTGAAGAATGACATTGATGATAAATGGCTAACC  50

seq1  TGGCTACTTCTGCTTGGTTAACAAAAAAAGCAGACAACCAAGTCTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACTTCTGCTTGGTTAACAAAAAAAGCAGACAACCAAGTCTCCTTT  100

seq1  GATCAGTTTACCCGATCTGGTATAATTCTGCCAATTTGCACAAAATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTTACCCGATCTGGTATAATTCTGCCAATTTGCACAAAATTTTA  150

seq1  TATTGTGAAAAAAACAGTAAACAATATGTAGGTAATTTATTTGTTGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGAAAAAAACAGTAAACAATATGTAGGTAATTTATTTGTTGGGGG  200

seq1  AAGTACCCTTTAGTCTGGTTCTATCATTCCTATACTTGTCCTCTTCGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCCTTTAGTCTGGTTCTATCATTCCTATACTTGTCCTCTTCGTGC  250

seq1  AAACTGAGGAGAAAATATTCTACACACAGTATGTTATGACTCCAGGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGGAGAAAATATTCTACACACAGTATGTTATGACTCCAGGAGCA  300

seq1  GGGGAGAGCCAATGCAAAGATGTGTGCAAGCCGAGTGGGTACTCAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGCCAATGCAAAGATGTGTGCAAGCCGAGTGGGTACTCAAGGCA  350

seq1  GGCAAGAAAGGGAGACAGAGATCATAGCCAAGACTTAGGTGGCAGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAAAGGGAGACAGAGATCATAGCCAAGACTTAGGTGGCAGTCATT  400

seq1  TTCCCAGGTCAGGAGGGAAATCTGAGTGCCCACTCAAGCATCTCTCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGTCAGGAGGGAAATCTGAGTGCCCACTCAAGCATCTCTCTGTT  450

seq1  CTAAAATAAAGCTTACAAGGAAATGCCTCGTTACCATCTAAACTTTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAAAGCTTACAAGGAAATGCCTCGTTACCATCTAAACTTTCACA  500

seq1  GTGTTTCGGGAACAGAGCCTGCTTTCTCTAAGTATTTATTAATCATGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCGGGAACAGAGCCTGCTTTCTCTAAGTATTTATTAATCATGATA  550

seq1  GGACAGCTTAACTAGGTAAACATGGCATCAGGAGGTTAAATGATGTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTTAACTAGGTAAACATGGCATCAGGAGGTTAAATGATGTGGAG  600

seq1  TTAGCATGGCAAGAAGAAGGTGTTCTATAGGCTAGCCCCATTTGTCACGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGGCAAGAAGAAGGTGTTCTATAGGCTAGCCCCATTTGTCACGG  650

seq1  AACCATGTTCTCATGACTTAGTAATTTGTGTTACCTAGAAGAGCTCTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGTTCTCATGACTTAGTAATTTGTGTTACCTAGAAGAGCTCTACC  700

seq1  TCACAGAACTGAATTCCTTCGGCGTGTTAGGCAATTACTTAGATGAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAACTGAATTCCTTCGGCGTGTTAGGCAATTACTTAGATGAATTA  750

seq1  TAGCATATTGTCTTATTTAATGCATTTCAAAAACAGAGCTGCTATTGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATTGTCTTATTTAATGCATTTCAAAAACAGAGCTGCTATTGTAC  800

seq1  CAGAAGCATGCTAGAGTACCCATGCTTGTGATACACAAACAAATAATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCATGCTAGAGTACCCATGCTTGTGATACACAAACAAATAATTTG  850

seq1  GAAAAACAAAGTAATTCAAATTGTATTCCACTTCATTTTCTACATATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAAGTAATTCAAATTGTATTCCACTTCATTTTCTACATATTAT  900

seq1  GGAAATTTTTAATATAATCCTAGTTTTCCAAAGTTATAGTTATTAAATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTTTAATATAATCCTAGTTTTCCAAAGTTATAGTTATTAAATCT  950

seq1  TTGAAACTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  1000

seq1  ATCTATCTATCTATCTGCCTCCATATCTATCTCTATAGAAGTACATTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTGCCTCCATATCTATCTCTATAGAAGTACATTTAT  1050

seq1  AAGTTGAGTATTAAGGAATG-CTGTATAGAAGGAAAGTAAAAGGACCCAT  1099
      |||||||||| || | |||| |||||||| | |||||  |||||| ||||
seq2  AAGTTGAGTAATACGAAATGCCTGTATAG-ACGAAAGGTAAAGGAACCAT  1099

seq1  CCAGATA-GTTCTGGGTAAATGAACCAGTGTTTAACAACAAAGTCCTAGT  1148
       |||| | ||||| ||||||||||||| ||||| ||||| |||| |||||
seq2  -CAGAAAGGTTCT-GGTAAATGAACCAATGTTT-ACAAC-AAGTTCTAGT  1145

seq1  TAAGTTCATTGCTATCATTTGTTGTA  1174
      |||||||| |||||||| ||||||||
seq2  TAAGTTCAATGCTATCA-TTGTTGTA  1170


seq1: chr3_148667295_148667619
seq2: B6Ng01-266A21.g_74_398 (reverse)

seq1  CCTCCCCCCAACCCCCCACTTCTCTCCAAGAGTCTTATGCATGCTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCCAACCCCCCACTTCTCTCCAAGAGTCTTATGCATGCTGTGTG  50

seq1  TTCTAACACTGAGCCAAGTGTGCCTTCCAACTTTCCAAGAGCAACAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACACTGAGCCAAGTGTGCCTTCCAACTTTCCAAGAGCAACAGAAA  100

seq1  TGGGGAAGCTCTTAAGAGATTGCCAATACTGAGAACAACACCTAATGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGCTCTTAAGAGATTGCCAATACTGAGAACAACACCTAATGAGG  150

seq1  CCAGGGAGAACTCACTGAATCCAAAGCCGGCCAGTTACTCCTCCTCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGAACTCACTGAATCCAAAGCCGGCCAGTTACTCCTCCTCCATA  200

seq1  CCTGGCCCTGACATCCTAGGGTCTTTCTCTGTCTTCTCCTCTCAACAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCTGACATCCTAGGGTCTTTCTCTGTCTTCTCCTCTCAACAGTA  250

seq1  AGTAATTTCACTCCAGGATTACCACTCCCACAGAGACATCCTTCCTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTTCACTCCAGGATTACCACTCCCACAGAGACATCCTTCCTTCCC  300

seq1  AACTCTATTGCACCTCCTCAATGAA  325
      |||||||||||||||||||||||||
seq2  AACTCTATTGCACCTCCTCAATGAA  325


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