BAC Information

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BAC

Clone NameB6Ng01-266D03
Chromosome3 (Build37)
Map Location 109,161,811 - 109,334,679
singlet/doubletdoublet
Overlap geneVav3
Upstream geneSort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
Downstream geneNtng1, LOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266D03.bB6Ng01-266D03.g
ACCGA069652GA069653
length1,1631,140
definitionB6Ng01-266D03.b B6Ng01-266D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,161,811 - 109,162,965)(109,333,542 - 109,334,679)
sequence
gaattctgcagcagccaaactaggtgttttcctcgtctcagaatttgtaa
acatttttcattttcctggacccaggacttgacatcttattttgatctcc
tagtgttgcagtccccttttaaacaacctgccgtacaaaccattgtttcg
ttctggtcttatgatagatagcaggggtcacttatattttactgaccaat
gattcctgtgaaccaacatagagcttacttagcattgatgccaaataact
gcctgtgagtgcttatctgagtattcatcgactattactaccaataaaca
caggcaaggatacggacttcaggtataatttgttaaaaatgtgacttcag
aatgctctgaaaacatatgtgcaagtattttttgggagtatgtaccagag
tacacttttaattgaataggatcttacatctttttaaaaacagaacaaag
ccataatctttcatgtagagaggacaagtctgaagagacagtaaacactt
gcagaaagcatagtttatttaatatctagtcagctttcatcttagccaac
agtttcatctcaaagacctatgataatattacctgagcatccaggaggct
tgccagggaacaatctagagtcaaatagcatagcaggacttaatggtgaa
gatgagcattcctgagagattagattaggactggaacatttcctctcact
ggagaaggacaagctagcttatattacagtgttaatgtctgcaagctcaa
gactgcgttttattctttcaaggagtagagttcgttctttggtgcatctg
tttgacagcactcattgaacacatagttaggcacgggcaacacggcccag
agctagatctctaagagtggtctgtttaaggggaggtgattctccctgcc
ctgtcttcatccgtagcccttctgttagagtattaggatatgcttgcgtg
tacgttgcttggtttctgttagagtattaggatatgcttgcatgtacgtt
gcttggtttctgttagagtattaggatatgcttgcgtgtacgttgctggg
tttcttgttagagtattaggatactctatattgcttgggtttctttgggg
tcttgggctttgaagaccgaatttgctatagagaatgaatgatttttcct
gttccattccatc
gaattccagaaagacaagacacagggtaaagctaaagacactgggaagag
cgggccccccacaggtacagaagcctgaccgcattttctagattgtcaca
ataccacacacttcttggctttctttgttttctatgacttagaaaagcag
aatgagtgaaaacaatgaacaaaatggaataaacctgacccttgggcaaa
atcttaagcattggcttttacccagatgattctacttcatgaagagcaag
ggaggacctgtcttagaaagctaatagcacggctctcagggcttcctggt
atagctagtttcaagaggaatagatgatgttaagatagtagctaggctga
taccttaactgagagtcctgcttttgattttgccctgcatgttttaactt
ttgcttacagactccccctcccgccaaggttcaactctgtgtaattttgc
agcaaggtctatctaccttctacctcttcaaataagcaggcaacagaact
ccaaaatacaaacatggctcctacttgtgcttcactgcattactggggtg
cttcaaaagtcttcaaagatgaggagtgtctggcccctgaaggtgtcggt
gcagaggagcaactcagttccgtctacaccctgtgtgcctgcaaacggta
aagctagctgcctgcctctccaaggccgcttctctcccttctctcgcagc
aagcttggcttaaacccatgtgactcaggaatgatcatctcagcctccct
tgtcatgtatagttaggtgtccaagttctgccctgatttaagaaaaatac
ttgttgtagaaggtccatcggaagagagagattaccttctcgccacctac
caggtagatcgtatagtcagaattccagcaaccatttatactttaaagta
agcaacaccgaagacagaagtcaaatgctgaggtcaggagatgagaacct
gagcctgaaagggaagctgatgctcaagcagccacctactgaacagcctc
tgcctaccacagatgtgtttcacatgcgagaggataagccacgcatcact
tagcctgtataagatgagctatatgacgtacgaaaatgtaacaaatggtc
actgaatatttctatgatgcagtccctaggacccttgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_109161811_109162965
seq2: B6Ng01-266D03.b_45_1207

seq1  GAATTCTGCAGCAGCCAAACTAGGTGTTTTCCTCGTCTCAGAATTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGCAGCCAAACTAGGTGTTTTCCTCGTCTCAGAATTTGTAA  50

seq1  ACATTTTTCATTTTCCTGGACCCAGGACTTGACATCTTATTTTGATCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCATTTTCCTGGACCCAGGACTTGACATCTTATTTTGATCTCC  100

seq1  TAGTGTTGCAGTCCCCTTTTAAACAACCTGCCGTACAAACCATTGTTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTGCAGTCCCCTTTTAAACAACCTGCCGTACAAACCATTGTTTCG  150

seq1  TTCTGGTCTTATGATAGATAGCAGGGGTCACTTATATTTTACTGACCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTCTTATGATAGATAGCAGGGGTCACTTATATTTTACTGACCAAT  200

seq1  GATTCCTGTGAACCAACATAGAGCTTACTTAGCATTGATGCCAAATAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGTGAACCAACATAGAGCTTACTTAGCATTGATGCCAAATAACT  250

seq1  GCCTGTGAGTGCTTATCTGAGTATTCATCGACTATTACTACCAATAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAGTGCTTATCTGAGTATTCATCGACTATTACTACCAATAAACA  300

seq1  CAGGCAAGGATACGGACTTCAGGTATAATTTGTTAAAAATGTGACTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGGATACGGACTTCAGGTATAATTTGTTAAAAATGTGACTTCAG  350

seq1  AATGCTCTGAAAACATATGTGCAAGTATTTTTTGGGAGTATGTACCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTGAAAACATATGTGCAAGTATTTTTTGGGAGTATGTACCAGAG  400

seq1  TACACTTTTAATTGAATAGGATCTTACATCTTTTTAAAAACAGAACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTTAATTGAATAGGATCTTACATCTTTTTAAAAACAGAACAAAG  450

seq1  CCATAATCTTTCATGTAGAGAGGACAAGTCTGAAGAGACAGTAAACACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATCTTTCATGTAGAGAGGACAAGTCTGAAGAGACAGTAAACACTT  500

seq1  GCAGAAAGCATAGTTTATTTAATATCTAGTCAGCTTTCATCTTAGCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGCATAGTTTATTTAATATCTAGTCAGCTTTCATCTTAGCCAAC  550

seq1  AGTTTCATCTCAAAGACCTATGATAATATTACCTGAGCATCCAGGAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATCTCAAAGACCTATGATAATATTACCTGAGCATCCAGGAGGCT  600

seq1  TGCCAGGGAACAATCTAGAGTCAAATAGCATAGCAGGACTTAATGGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGGAACAATCTAGAGTCAAATAGCATAGCAGGACTTAATGGTGAA  650

seq1  GATGAGCATTCCTGAGAGATTAGATTAGGACTGGAACATTTCCTCTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCATTCCTGAGAGATTAGATTAGGACTGGAACATTTCCTCTCACT  700

seq1  GGAGAAGGACAAGCTAGCTTATATTACAGTGTTAATGTCTGCAAGCTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGACAAGCTAGCTTATATTACAGTGTTAATGTCTGCAAGCTCAA  750

seq1  GACTGCGTTTTATTCTTTCAAGGAGTAGAGTTCGTTCTTTGGTGCATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCGTTTTATTCTTTCAAGGAGTAGAGTTCGTTCTTTGGTGCATCTG  800

seq1  TTTGACAGCACTCATTGAACACATAGTTAGGCACGGGCAACACGGCCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGCACTCATTGAACACATAGTTAGGCACGGGCAACACGGCCCAG  850

seq1  AGCTAGATCTCTAAGAGTGGTCTGTTTAAGGGGAGGTGATTCTCCCTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGATCTCTAAGAGTGGTCTGTTTAAGGGGAGGTGATTCTCCCTGCC  900

seq1  CTGTCTTCATCCGTAGCCCTTCTGTTAGAGTATTAGGATATGCTTGCGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCATCCGTAGCCCTTCTGTTAGAGTATTAGGATATGCTTGCGTG  950

seq1  TACGTTGCTTGGTTTCTGTTAGAGTATTAGGATATGCTTGCATGTACGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTGCTTGGTTTCTGTTAGAGTATTAGGATATGCTTGCATGTACGTT  1000

seq1  GCTTGGTTTCTGTTAGAGTATTAGGATATGCTTGCGTGTACGTTGCTTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCTTGGTTTCTGTTAGAGTATTAGGATATGCTTGCGTGTACGTTGCTGGG  1050

seq1  TTTC-TGTTAGAGTATTAGGATACTCTATATTGCTT-GGTTTCTTTGGGG  1098
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTCTTGTTAGAGTATTAGGATACTCTATATTGCTTGGGTTTCTTTGGGG  1100

seq1  TCTT-GGCTTTG-AGACCGATTTGCCTATAGAG-ATG-ATGATTTT--CT  1142
      |||| ||||||| ||||||| ||  |||||||| ||| ||||||||  ||
seq2  TCTTGGGCTTTGAAGACCGAATTTGCTATAGAGAATGAATGATTTTTCCT  1150

seq1  G-TCCATTCTCATC  1155
      | ||||||| ||||
seq2  GTTCCATTC-CATC  1163

seq1: chr3_109333542_109334679
seq2: B6Ng01-266D03.g_69_1208 (reverse)

seq1  AAGC-AGGGTCCTA-GGACTGCATCATAGACATA-TCAGTGACCATTTTG  47
      |||| ||||||||| ||||||||||||||| ||| |||||||||| ||||
seq2  AAGCAAGGGTCCTAGGGACTGCATCATAGAAATATTCAGTGACCA-TTTG  49

seq1  TTACATTTTCGTACGTCATATAGCTCATCCTTAATACAAGCTAAGTGATG  97
      |||||||||||||||||||||||||||||  | ||||| |||||||||||
seq2  TTACATTTTCGTACGTCATATAGCTCATC--TTATACAGGCTAAGTGATG  97

seq1  CGT-GCTTATCCTCTCGCATGTGAAACACATCTGTGGTAGGCAGAGGCTG  146
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTTATCCTCTCGCATGTGAAACACATCTGTGGTAGGCAGAGGCTG  147

seq1  TTCAGTAGGTGGCTGCCTGAGCATCAGC-TCCCTTTCAGGCTCAGGTTCT  195
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TTCAGTAGGTGGCTGCTTGAGCATCAGCTTCCCTTTCAGGCTCAGGTTCT  197

seq1  CATCTCCTGACCTCAGCATTTGACTTCTGTCTTCGGTGTTGCTTACTTTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTGACCTCAGCATTTGACTTCTGTCTTCGGTGTTGCTTACTTTA  247

seq1  AAGTATAAATGGTTGCTGGAATTCTGACTATACGATCTACCTGGTAGGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAATGGTTGCTGGAATTCTGACTATACGATCTACCTGGTAGGTG  297

seq1  GCGAGAAGGTAATCTCTCTCTTCCGATGGACCTTCTACAACAAGTATTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAAGGTAATCTCTCTCTTCCGATGGACCTTCTACAACAAGTATTTT  347

seq1  TCTTAAATCAGGGCAGAACTTGGACACCTAACTATACATGACAAGGGAGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATCAGGGCAGAACTTGGACACCTAACTATACATGACAAGGGAGG  397

seq1  CTGAGATGATCATTCCTGAGTCACATGGGTTTAAGCCAAGCTTGCTGCGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGATCATTCCTGAGTCACATGGGTTTAAGCCAAGCTTGCTGCGA  447

seq1  GAGAAGGGAGAGAAGCGGCCTTGGAGAGGCAGGCAGCTAGCTTTACCGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGAGAGAAGCGGCCTTGGAGAGGCAGGCAGCTAGCTTTACCGTT  497

seq1  TGCAGGCACACAGGGTGTAGACGGAACTGAGTTGCTCCTCTGCACCGACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCACACAGGGTGTAGACGGAACTGAGTTGCTCCTCTGCACCGACA  547

seq1  CCTTCAGGGGCCAGACACTCCTCATCTTTGAAGACTTTTGAAGCACCCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGGGCCAGACACTCCTCATCTTTGAAGACTTTTGAAGCACCCCA  597

seq1  GTAATGCAGTGAAGCACAAGTAGGAGCCATGTTTGTATTTTGGAGTTCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCAGTGAAGCACAAGTAGGAGCCATGTTTGTATTTTGGAGTTCTG  647

seq1  TTGCCTGCTTATTTGAAGAGGTAGAAGGTAGATAGACCTTGCTGCAAAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGCTTATTTGAAGAGGTAGAAGGTAGATAGACCTTGCTGCAAAAT  697

seq1  TACACAGAGTTGAACCTTGGCGGGAGGGGGAGTCTGTAAGCAAAAGTTAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGTTGAACCTTGGCGGGAGGGGGAGTCTGTAAGCAAAAGTTAA  747

seq1  AACATGCAGGGCAAAATCAAAAGCAGGACTCTCAGTTAAGGTATCAGCCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCAGGGCAAAATCAAAAGCAGGACTCTCAGTTAAGGTATCAGCCT  797

seq1  AGCTACTATCTTAACATCATCTATTCCTCTTGAAACTAGCTATACCAGGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTATCTTAACATCATCTATTCCTCTTGAAACTAGCTATACCAGGA  847

seq1  AGCCCTGAGAGCCGTGCTATTAGCTTTCTAAGACAGGTCCTCCCTTGCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAGAGCCGTGCTATTAGCTTTCTAAGACAGGTCCTCCCTTGCTC  897

seq1  TTCATGAAGTAGAATCATCTGGGTAAAAGCCAATGCTTAAGATTTTGCCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAGTAGAATCATCTGGGTAAAAGCCAATGCTTAAGATTTTGCCC  947

seq1  AAGGGTCAGGTTTATTCCATTTTGTTCATTGTTTTCACTCATTCTGCTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCAGGTTTATTCCATTTTGTTCATTGTTTTCACTCATTCTGCTTT  997

seq1  TCTAAGTCATAGAAAACAAAGAAAGCCAAGAAGTGTGTGGTATTGTGACA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCATAGAAAACAAAGAAAGCCAAGAAGTGTGTGGTATTGTGACA  1047

seq1  ATCTAGAAAATGCGGTCAGGCTTCTGTACCTGTGGGGGGCCCGCTCTTCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAAATGCGGTCAGGCTTCTGTACCTGTGGGGGGCCCGCTCTTCC  1097

seq1  CAGTGTCTTTAGCTTTACCCTGTGTCTTGTCTTTCTGGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTTTAGCTTTACCCTGTGTCTTGTCTTTCTGGAATTC  1140