BAC Information

Click to search

BAC

Clone NameB6Ng01-266D08
Chromosome3 (Build37)
Map Location 127,981,938 - 127,983,065
singlet/doubletsinglet
Overlap geneEG668828
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneLOC100043393, EG668831, Pitx2, Enpep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266D08.bB6Ng01-266D08.g
ACCGA069662GA069663
length1,1311,185
definitionB6Ng01-266D08.b B6Ng01-266D08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcactttatatgtatttcctaaaggggaaaagtttgatacctat
ggtaatagaataataatttaatatcatacctgttgacatatagcttaaca
actgtttttgctatgtcatatattcatattcattcactacttggcataaa
atgttttgagttatagtgtatgtaagactactactacaagtgagatccaa
ttatagtataatccaattcatataggcctgatcttacttctctcatatgc
aaatttggctggaaggatcgtccacatggtagctgtgccctacaagggcc
tcagggaacaatttgcactagctactgcatcaaatagccccaaggggaaa
ttcttcatgcaaactgttgtccactggcttacatagcaacataggtgctt
taactcctccactttgggatggtctcctatttatgacaaagacagcagca
agttagagggactaaaatgaaaggaccaagactgcatccatttcatgctc
atagtccattggctagtgcgctgagcatctgtgtcctcacattcatccag
taagaaagttgtactgtgtggtcgtctaagcctgtggttccggacctgtg
agctgcaacccatttgggttgaatgaccctttcatgggagtcataaaaaa
aatcagaaaacataaatatttacattacaattgacaacactagccgtgta
aatgacagttacaaaatagcaatgaacataattttatgatttgggtcact
acaccatgagggactgtattaaagggtcacaacactgggaaggtgggaca
tcaccaatctattccatgtgtcaaggcaaggtgacagaaacagaagtcaa
agggaagaaatgaaggtaacctaatgcagtgttataaaagcaacaaagtc
aatgagacatttaggaacaggaggggcaccatctcactttgcttagactc
tacattgctctgaaggcttattaaaagaatttaaacttcttattatgagg
tgaataatattatagtttgtaggaaaagacttaattttcatgatgcagca
atatttgcatatgggtggtagctattcagaggactaatgcactttttttt
ttttttttaccttccagtatacaaaagcacc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaagagctaaagggatcttcaacccta
taggtggaacacatatgactaccagtacccctgagctctgactctagctg
catatgtatcaaagaatggcttagtcggcatcactgcaaagaagaggtcc
atgacacgcaacctttatatgcccgtccgggtacgcaagtccaacgggaa
actgcgagtggttaggaaactgcaatcctgcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_127981938_127983065
seq2: B6Ng01-266D08.b_46_1176 (reverse)

seq1  GGTGC-TTTGTATACTGGAAAGT--TAAAAAAAAAAAAAGTGCATTAGTC  47
      ||||| |||||||||||||| ||   ||||||||||||||||||||||||
seq2  GGTGCTTTTGTATACTGGAAGGTAAAAAAAAAAAAAAAAGTGCATTAGTC  50

seq1  CTCTGAATAGCTACCACCCATATGCAAATATGCCTGCATCATGGAAAAAT  97
      |||||||||||||||||||||||||||||||  ||||||||||  |||||
seq2  CTCTGAATAGCTACCACCCATATGCAAATATTGCTGCATCATG--AAAAT  98

seq1  TAAGTCTTTTTCCTACAAACTAT-ATATTATTCCACCTCATA--TAGAAG  144
      |||||| |||||||||||||||| |||||||| |||||||||   |||||
seq2  TAAGTC-TTTTCCTACAAACTATAATATTATT-CACCTCATAATAAGAAG  146

seq1  TTT-AATTC-TTTAATAAGCCTTCAGAGCAATGTAGAGTCTAAGCAAAGT  192
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTCTTTTAATAAGCCTTCAGAGCAATGTAGAGTCTAAGCAAAGT  196

seq1  GAGATGGTGCCCCTCCCTGTTCCTAAATGTCTCATTGACTTTGTTGCTTT  242
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGATGGTGCCCCT-CCTGTTCCTAAATGTCTCATTGACTTTGTTGCTTT  245

seq1  TATAACACTGCATTAGGTTACCTTCATTTCTTCCCTTTGACTTCTGTTTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACACTGCATTAGGTTACCTTCATTTCTTCCCTTTGACTTCTGTTTC  295

seq1  TGTCACCTTGCCTTGACACATGGAATAGATTGGTGATGTCCCACCTTCCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTTGCCTTGACACATGGAATAGATTGGTGATGTCCCACCTTCCC  345

seq1  AGTGTTGTGACCCTTTAATACAGTCCCTCATGGTGTAGTGACCCAAATCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTGACCCTTTAATACAGTCCCTCATGGTGTAGTGACCCAAATCA  395

seq1  TAAAATTATGTTCATTGCTATTTTGTAACTGTCATTTACACGGCTAGTGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATGTTCATTGCTATTTTGTAACTGTCATTTACACGGCTAGTGT  445

seq1  TGTCAATTGTAATGTAAATATTTATGTTTTCTGATTTTTTTTATGACTCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTGTAATGTAAATATTTATGTTTTCTGATTTTTTTTATGACTCC  495

seq1  CATGAAAGGGTCATTCAACCCAAATGGGTTGCAGCTCACAGGTCCGGAAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGGGTCATTCAACCCAAATGGGTTGCAGCTCACAGGTCCGGAAC  545

seq1  CACAGGCTTAGACGACCACACAGTACAACTTTCTTACTGGATGAATGTGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTTAGACGACCACACAGTACAACTTTCTTACTGGATGAATGTGA  595

seq1  GGACACAGATGCTCAGCGCACTAGCCAATGGACTATGAGCATGAAATGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGATGCTCAGCGCACTAGCCAATGGACTATGAGCATGAAATGGA  645

seq1  TGCAGTCTTGGTCCTTTCATTTTAGTCCCTCTAACTTGCTGCTGTCTTTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCTTGGTCCTTTCATTTTAGTCCCTCTAACTTGCTGCTGTCTTTG  695

seq1  TCATAAATAGGAGACCATCCCAAAGTGGAGGAGTTAAAGCACCTATGTTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATAGGAGACCATCCCAAAGTGGAGGAGTTAAAGCACCTATGTTG  745

seq1  CTATGTAAGCCAGTGGACAACAGTTTGCATGAAGAATTTCCCCTTGGGGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAAGCCAGTGGACAACAGTTTGCATGAAGAATTTCCCCTTGGGGC  795

seq1  TATTTGATGCAGTAGCTAGTGCAAATTGTTCCCTGAGGCCCTTGTAGGGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATGCAGTAGCTAGTGCAAATTGTTCCCTGAGGCCCTTGTAGGGC  845

seq1  ACAGCTACCATGTGGACGATCCTTCCAGCCAAATTTGCATATGAGAGAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACCATGTGGACGATCCTTCCAGCCAAATTTGCATATGAGAGAAG  895

seq1  TAAGATCAGGCCTATATGAATTGGATTATACTATAATTGGATCTCACTTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCAGGCCTATATGAATTGGATTATACTATAATTGGATCTCACTTG  945

seq1  TAGTAGTAGTCTTACATACACTATAACTCAAAACATTTTATGCCAAGTAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTAGTCTTACATACACTATAACTCAAAACATTTTATGCCAAGTAG  995

seq1  TGAATGAATATGAATATATGACATAGCAAAAACAGTTGTTAAGCTATATG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATATGAATATATGACATAGCAAAAACAGTTGTTAAGCTATATG  1045

seq1  TCAACAGGTATGATATTAAATTATTATTCTATTACCATAGGTATCAAACT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGGTATGATATTAAATTATTATTCTATTACCATAGGTATCAAACT  1095

seq1  TTTCCCCTTTAGGAAATACATATAAAGTGAGAATTC  1128
      ||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTTTAGGAAATACATATAAAGTGAGAATTC  1131