BAC Information

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BAC

Clone NameB6Ng01-266J18
Chromosome3 (Build37)
Map Location 122,726,849 - 122,853,772
singlet/doubletdoublet
Overlap geneMyoz2, Synpo2
Upstream geneAbca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53
Downstream geneSec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266J18.bB6Ng01-266J18.g
ACCGA069963GA069964
length1,1291,114
definitionB6Ng01-266J18.b B6Ng01-266J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,726,849 - 122,727,983)(122,852,654 - 122,853,772)
sequence
gaattctgattcctgtcaatttatacctttgggaaatatttagcaagtgc
ctattatgttgtaggcactatgttggaaatccaaaagcaaataaatgcat
ttttttttttgtctagagatgataaaggcacacaacattaaaagaccaag
caatccctgcctttacaatctttattggtatatactgctctaagttattt
agcatcattatattgtttgatttggttgtttgggattctactaatcattt
catgtccaattttcttggaatagtaaacaatctcaagtcatatcttcata
tgtttattataactgaaaacaaatatgtaagattatgagaggatatgtta
tgttcatgaagacagttctaatcccacatacccgtggttcttgacctgtg
ggctgtgacacctttggggtcaaatgaatctttcacaagggtcacctaag
actaatagcgaatatcagatatttacactatgatttgtaacagtagcaaa
attataattataaagtagcaacaaaataattttatggttgggggtcacta
caacatgaggaactgtgttaaagggtcgcagcacttggcaggttgagagc
cacttccttcttcagagcggtagttataccgttagtgtttgcagtgtctg
tgggagtcatgcaagcaggcattattcatttactgagaagtctgaacttg
caggtggttttgcaaggctttccttaatccacctatttcatattacttca
taaaatgtcgtctttgttgttattccttcatgaatgtaattttgtaacag
gccattgggtaaatagggattattttcagttcatactgtactagccacag
atattttccgaggagagggtattatggataataataggctaaaataacat
catctatttacccatgacttcaggtaaaaaaaaaaaaaaaccaaaaaact
tatccttcacaaatgaaatatccgttattgagtgtgattttccatgtctc
actgaaattcacaataaactagattcagtctgcttgttgtttggtggact
atagttctggagtttgaaccagtcaggcaggactcaatcagcacattatt
ccccggcctttcaaagctaattaagcctg
gaattctgggactgagtaagtgtgtcacgacatctggctttttatgtgaa
atctggagattaaattaggtcgtcaggttcggagccaagcaagggctttt
accatctgagccacttgccagtccgagatccatttccttatttagcagtg
actcacttgaagagaagagggtttctaagactatttagttagattgccat
ctaagcagacacagtcagtgtgcgtggagacagcgcatgtggcctctctc
atctcccaacctgggcatgagctagtgataatactcatcaaaacttttga
taagatcgaagtactgtggagacccaggcaatatgcatgaccactatgtg
tgggctttttatttgacttctgcgttttccatagcatgaaagctgcatat
tattatcctaactttggaaaaaaggataaaattcagaaaagttatgtaac
atatgaagtatttagctcagtacctaactgttttccagtaactattcatg
aaaaactcacatttgcttccctaagggaaacacagttgttactaaatgag
agaatttgagttcaaaattaaataccatagaatgatttcggtaacagatg
gcctcagtttttacatgaaatttatttgaattgtgtttattcaagaagct
gtggcagtcattgtataagctatatttgccaattttgctaaaattgcaaa
attgctaaaaatgtgggtttttttttttttacgtttagttgtaggttctt
ttcctttaggtttccacattgtacagattttaagtccctggactaagagt
tcactttgtttgctccgtggttgaaaaggcgttaacagcaagggaagtga
atttgaagcgaagcagccctgcctcctcagaaagaacagaacactttccc
taaaagcagaggctcccagcatggccttctacagcatgagtaaaacccga
gtctaaacatgggttttccctgggctgcacatccctgggctgcacatttg
gatcctgctttacttagactgacatttgggaattgcatctagtcatctag
agtaggttgtatgaaactcaagatgcttccctaaccacccccatataagt
agtgagaaggcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122726849_122727983
seq2: B6Ng01-266J18.b_47_1175

seq1  GAATTCTGATTCCTGTCAATTTATACCTTTGGGAAATATTTAGCAAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTCCTGTCAATTTATACCTTTGGGAAATATTTAGCAAGTGC  50

seq1  CTATTATGTTGTAGGCACTATGTTGGAAATCCAAAAGCAAATAAATGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATGTTGTAGGCACTATGTTGGAAATCCAAAAGCAAATAAATGCAT  100

seq1  TTTTTTTTTTGTCTAGAGATGATAAAGGCACACAACATTAAAAGACCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGTCTAGAGATGATAAAGGCACACAACATTAAAAGACCAAG  150

seq1  CAATCCCTGCCTTTACAATCTTTATTGGTATATACTGCTCTAAGTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCTGCCTTTACAATCTTTATTGGTATATACTGCTCTAAGTTATTT  200

seq1  AGCATCATTATATTGTTTGATTTGGTTGTTTGGGATTCTACTAATCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCATTATATTGTTTGATTTGGTTGTTTGGGATTCTACTAATCATTT  250

seq1  CATGTCCAATTTTCTTGGAATAGTAAACAATCTCAAGTCATATCTTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCAATTTTCTTGGAATAGTAAACAATCTCAAGTCATATCTTCATA  300

seq1  TGTTTATTATAACTGAAAACAAATATGTAAGATTATGAGAGGATATGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTATAACTGAAAACAAATATGTAAGATTATGAGAGGATATGTTA  350

seq1  TGTTCATGAAGACAGTTCTAATCCCACATACCCGTGGTTCTTGACCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGAAGACAGTTCTAATCCCACATACCCGTGGTTCTTGACCTGTG  400

seq1  GGCTGTGACACCTTTGGGGTCAAATGAATCTTTCACAAGGGTCACCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGACACCTTTGGGGTCAAATGAATCTTTCACAAGGGTCACCTAAG  450

seq1  ACTAATAGCGAATATCAGATATTTACACTATGATTTGTAACAGTAGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAGCGAATATCAGATATTTACACTATGATTTGTAACAGTAGCAAA  500

seq1  ATTATAATTATAAAGTAGCAACAAAATAATTTTATGGTTGGGGGTCACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATTATAAAGTAGCAACAAAATAATTTTATGGTTGGGGGTCACTA  550

seq1  CAACATGAGGAACTGTGTTAAAGGGTCGCAGCACTTGGCAGGTTGAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGAGGAACTGTGTTAAAGGGTCGCAGCACTTGGCAGGTTGAGAGC  600

seq1  CACTTCCTTCTTCAGAGCGGTAGTTATACCGTTAGTGTTTGCAGTGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTTCTTCAGAGCGGTAGTTATACCGTTAGTGTTTGCAGTGTCTG  650

seq1  TGGGAGTCATGCAAGCAGGCATTATTCATTTACTGAGAAGTCTGAACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCATGCAAGCAGGCATTATTCATTTACTGAGAAGTCTGAACTTG  700

seq1  CAGGTGGTTTTGCAAGGCTTTCCTTAATCCACCTATTTCATATTACTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTTTTGCAAGGCTTTCCTTAATCCACCTATTTCATATTACTTCA  750

seq1  TAAAATGTCGTCTTTGTTGTTATTCCTTCATGAATGTAATTTTGTAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTCGTCTTTGTTGTTATTCCTTCATGAATGTAATTTTGTAACAG  800

seq1  GCCATTGGGTAAATAGGGATTATTTTCAGTTCATACTGTACTAGCCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGGGTAAATAGGGATTATTTTCAGTTCATACTGTACTAGCCACAG  850

seq1  ATATTTTCCGAGGAGAGGGTATTATGGATAATAATAGGCTAAAATAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCCGAGGAGAGGGTATTATGGATAATAATAGGCTAAAATAACAT  900

seq1  CATCTATTTACCCATGACTTCAGGT-AAAAAAAAAAAAAACCAAAAAACT  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATCTATTTACCCATGACTTCAGGTAAAAAAAAAAAAAAACCAAAAAACT  950

seq1  TATCCTTCACAAATGAAAATAT-CGTAATTGAGTGTGATTTTCCATGTCT  998
      ||||||||||||||| |||||| ||| |||||||||||||||||||||||
seq2  TATCCTTCACAAATG-AAATATCCGTTATTGAGTGTGATTTTCCATGTCT  999

seq1  CACTG-AATTCACAATTAAAACTAGAATCAAGTCTTGCTTGTTGTTTGGT  1047
      ||||| ||||||||||  |||||||| || |||| |||||||||||||||
seq2  CACTGAAATTCACAAT--AAACTAGATTC-AGTC-TGCTTGTTGTTTGGT  1045

seq1  TGACTATAGTTCTGGAGTTTGAACAAGTCAGGCAGGGACTCAATCAGCAC  1097
       ||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  GGACTATAGTTCTGGAGTTTGAACCAGTCAGGCA-GGACTCAATCAGCAC  1094

seq1  ATTTAATCCCCGGCTTTCAAAAGCTTAATTTAAGCCTG  1135
      | ||| |||||||| ||  ||||||  | |||||||||
seq2  A-TTATTCCCCGGCCTTTCAAAGCT--AATTAAGCCTG  1129

seq1: chr3_122852654_122853772
seq2: B6Ng01-266J18.g_66_1179 (reverse)

seq1  GGTGCCTTTCTTCACTTACTTATAT-GTGGTGGTAAGGAAAGCATCCTTG  49
      ||||||||   |||| ||||||||| | |||||| ||| |||||||  | 
seq2  GGTGCCTT--CTCAC-TACTTATATGGGGGTGGTTAGGGAAGCATC--TT  45

seq1  GAGTTTCATACAA-CTACTCTAGATGACTAGATGCAAATTCCCAAATGTC  98
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  GAGTTTCATACAACCTACTCTAGATGACTAGATGC-AATTCCCAAATGTC  94

seq1  AGTCTAAAGTAAACCAGGATCCAAATGTGCAGCCCAGGGAATGTGCAGCC  148
      ||||| ||||||| ||||||||||||||||||||||||| ||||||||||
seq2  AGTCT-AAGTAAAGCAGGATCCAAATGTGCAGCCCAGGG-ATGTGCAGCC  142

seq1  CAGGGAAAACCCCATGTTTAGACTCGGGTTTTACTCATGCTGTAGAAGGC  198
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAAA-CCCATGTTTAGACTCGGGTTTTACTCATGCTGTAGAAGGC  191

seq1  CATGCTGGGAGCCTCTGCTTTTAGGG-AAGTGTTCTGTTCTTTCTGAGGA  247
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATGCTGGGAGCCTCTGCTTTTAGGGAAAGTGTTCTGTTCTTTCTGAGGA  241

seq1  GGCAGGGCTGCTTCGCTTCAAATTCACTTCCCTTGCTGTTAACGCCTTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGCTGCTTCGCTTCAAATTCACTTCCCTTGCTGTTAACGCCTTTT  291

seq1  CAACCACGGAGCAAACAAAGTGAACTCTTAGTCCAGGGACTTAAAATCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACGGAGCAAACAAAGTGAACTCTTAGTCCAGGGACTTAAAATCTG  341

seq1  TACAATGTGGAAACCTAAAGGAAAAGAACCTACAACTAAACGT-AAAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TACAATGTGGAAACCTAAAGGAAAAGAACCTACAACTAAACGTAAAAAAA  391

seq1  AAAAAACCCACATTTTTAGCAATTTTGCAATTTTAGCAAAATTGGCAAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCACATTTTTAGCAATTTTGCAATTTTAGCAAAATTGGCAAAT  441

seq1  ATAGCTTATACAATGACTGCCACAGCTTCTTGAATAAACACAATTCAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTATACAATGACTGCCACAGCTTCTTGAATAAACACAATTCAAAT  491

seq1  AAATTTCATGTAAAAACTGAGGCCATCTGTTACCGAAATCATTCTATGGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCATGTAAAAACTGAGGCCATCTGTTACCGAAATCATTCTATGGT  541

seq1  ATTTAATTTTGAACTCAAATTCTCTCATTTAGTAACAACTGTGTTTCCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTTGAACTCAAATTCTCTCATTTAGTAACAACTGTGTTTCCCT  591

seq1  TAGGGAAGCAAATGTGAGTTTTTCATGAATAGTTACTGGAAAACAGTTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGCAAATGTGAGTTTTTCATGAATAGTTACTGGAAAACAGTTAG  641

seq1  GTACTGAGCTAAATACTTCATATGTTACATAACTTTTCTGAATTTTATCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAGCTAAATACTTCATATGTTACATAACTTTTCTGAATTTTATCC  691

seq1  TTTTTTCCAAAGTTAGGATAATAATATGCAGCTTTCATGCTATGGAAAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCAAAGTTAGGATAATAATATGCAGCTTTCATGCTATGGAAAAC  741

seq1  GCAGAAGTCAAATAAAAAGCCCACACATAGTGGTCATGCATATTGCCTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGTCAAATAAAAAGCCCACACATAGTGGTCATGCATATTGCCTGG  791

seq1  GTCTCCACAGTACTTCGATCTTATCAAAAGTTTTGATGAGTATTATCACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCACAGTACTTCGATCTTATCAAAAGTTTTGATGAGTATTATCACT  841

seq1  AGCTCATGCCCAGGTTGGGAGATGAGAGAGGCCACATGCGCTGTCTCCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATGCCCAGGTTGGGAGATGAGAGAGGCCACATGCGCTGTCTCCAC  891

seq1  GCACACTGACTGTGTCTGCTTAGATGGCAATCTAACTAAATAGTCTTAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGACTGTGTCTGCTTAGATGGCAATCTAACTAAATAGTCTTAGA  941

seq1  AACCCTCTTCTCTTCAAGTGAGTCACTGCTAAATAAGGAAATGGATCTCG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCTTCTCTTCAAGTGAGTCACTGCTAAATAAGGAAATGGATCTCG  991

seq1  GACTGGCAAGTGGCTCAGATGGTAAAAGCCCTTGCTTGGCTCCGAACCTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCAAGTGGCTCAGATGGTAAAAGCCCTTGCTTGGCTCCGAACCTG  1041

seq1  ACGACCTAATTTAATCTCCAGATTTCACATAAAAAGCCAGATGTCGTGAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCTAATTTAATCTCCAGATTTCACATAAAAAGCCAGATGTCGTGAC  1091

seq1  ACACTTACTCAGTCCCAGAATTC  1119
      |||||||||||||||||||||||
seq2  ACACTTACTCAGTCCCAGAATTC  1114