BAC Information

Click to search

BAC

Clone NameB6Ng01-266M16
Chromosome3 (Build37)
Map Location 11,506,459 - 11,507,573
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670564, LOC383826, EG667978
Downstream geneLOC667999, EG621965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266M16.bB6Ng01-266M16.g
ACCGA070097GA070098
length1,1011,177
definitionB6Ng01-266M16.b B6Ng01-266M16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattgcttttcagtccagtcattaagaactatatcagcagttac
cacaaagacggctcacctgtttgtttgtagttacagacaaccaaacttta
tttctcagcaacgacattaggtagctcacaaatgcccataaatctagctc
agaatacttaagtacagtcttcaggtatccagaagaacatggaaaaacca
ccatataagtttctgaatgatttgatggaggtcttacaatagagtatgta
tatcccaagaagggagagagaagaatttctcctagaaaggaaaaggaaag
ggaatagtttgtttcccaaaagaaagatagggaagtgcactgtgtcaagt
ggaaaacagattagagatgaaaagagtaaccaaggcttatgttgggaaga
tttaggctcaggtatggttgactcaatttggagtttaactctgtgggcaa
attgaatcatttaagctaatctttgaaattgaatgttacaaatctcatta
tatatataacaggagtgacttaaacataagatggacattgggtagttctg
gaatcaaagtcattatatttttatcaaatattttgagaacaatgccaaca
ggaaacataggtgggcatggctaacacagaaaatacatttcttttggaca
ccttttggaaaatttgggtgaaaattgaaattatttttggttaaatttga
atttataacacattatattaaatgttccctttcatgtttactttactcat
aggattattcttttaattaacaaatgtttctagctcaaaagacttaagca
gattgttgttttctccagaatgaatgggaaagaacacagaattcagtaac
agaagagcgtccagttaatgctttctttgttccttgttgctaggctccat
aagtcactttctaagttgagcttaatgaaaatgaacatttctattatgtt
ccattctgacatatatgattgggaatgcctttgaatcaagacactaatta
aaaatctataaaaaatacaatgtagtgtacttggaaaggatcatgcacag
ctactgtattcttttaaagtgtaacatgcatggatccttttgtcatactt
t

gaattctttgttcagttctgagccccatttttaaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctgattttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctacatgataacaaccagttgtggcagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctactggtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagagtttcttt
tatccttgagaagactttttgctatcctaggttttttgttattctagatg
aatttgaaaattgctccttctaattcgttgaagaattaagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
tagatctttcacttccttagttagagtcacaccaagatatttatattttt
tgtgactattgagaagggtgttgttcctatttctttctcagcctgtttat
tctttgtatagagaaggccattgacttgtttggagttatttatatcagct
acttcacgagctgtttatcagtttaaggagtctctgtagaattttaagtc
actatataacctatcttatcactgcaaggaattggacttccctttcaatt
tggaatccctggactcccttgttgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_11506459_11507573
seq2: B6Ng01-266M16.b_44_1144 (reverse)

seq1  AAAGTTATGACAAAA-GATACAATTTCCATGTTACACTTTAAAAGAAATT  49
      |||| |||||||||| ||| ||   | ||||||||||||||||||||  |
seq2  AAAG-TATGACAAAAGGATCCA---TGCATGTTACACTTTAAAAGAA--T  44

seq1  ACAGTAGCTGTGCCATGATTCCTTTCCAAAGTAACACTACATTTGTATTT  99
      |||||||||||| ||||| |||||||| |||| |||||||| ||||||||
seq2  ACAGTAGCTGTG-CATGA-TCCTTTCC-AAGT-ACACTACA-TTGTATTT  89

seq1  TTTATTAGATTTTTTAATTTAGTTGTCTTGATTCAAAGGCATT-CCAATC  148
      |||| |||||||||  | |||| |||||||||||||||||||| ||||||
seq2  TTTA-TAGATTTTT--AATTAG-TGTCTTGATTCAAAGGCATTCCCAATC  135

seq1  ATATATTGTCAGAATGGAACATAATAGAAATGTTCATTTTCATTAAGCTC  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATA-TGTCAGAATGGAACATAATAGAAATGTTCATTTTCATTAAGCTC  184

seq1  AACTTAGAAAGTGACTTATGGAGCCTAGCAACAAGGAACAAAGAAAGCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGAAAGTGACTTATGGAGCCTAGCAACAAGGAACAAAGAAAGCAT  234

seq1  TAACTGGACGCTCTTCTGTTACTGAATTCTGTGTTCTTTCCCATTCATTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGACGCTCTTCTGTTACTGAATTCTGTGTTCTTTCCCATTCATTC  284

seq1  TGGAGAAAACAACAATCTGCTTAAGTCTTTTGAGCTAGAAACATTTGTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAACAACAATCTGCTTAAGTCTTTTGAGCTAGAAACATTTGTTA  334

seq1  ATTAAAAGAATAATCCTATGAGTAAAGTAAACATGAAAGGGAACATTTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGAATAATCCTATGAGTAAAGTAAACATGAAAGGGAACATTTAA  384

seq1  TATAATGTGTTATAAATTCAAATTTAACCAAAAATAATTTCAATTTTCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGTGTTATAAATTCAAATTTAACCAAAAATAATTTCAATTTTCAC  434

seq1  CCAAATTTTCCAAAAGGTGTCCAAAAGAAATGTATTTTCTGTGTTAGCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTTTCCAAAAGGTGTCCAAAAGAAATGTATTTTCTGTGTTAGCCA  484

seq1  TGCCCACCTATGTTTCCTGTTGGCATTGTTCTCAAAATATTTGATAAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCTATGTTTCCTGTTGGCATTGTTCTCAAAATATTTGATAAAAA  534

seq1  TATAATGACTTTGATTCCAGAACTACCCAATGTCCATCTTATGTTTAAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGACTTTGATTCCAGAACTACCCAATGTCCATCTTATGTTTAAGT  584

seq1  CACTCCTGTTATATATATAATGAGATTTGTAACATTCAATTTCAAAGATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGTTATATATATAATGAGATTTGTAACATTCAATTTCAAAGATT  634

seq1  AGCTTAAATGATTCAATTTGCCCACAGAGTTAAACTCCAAATTGAGTCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAATGATTCAATTTGCCCACAGAGTTAAACTCCAAATTGAGTCAA  684

seq1  CCATACCTGAGCCTAAATCTTCCCAACATAAGCCTTGGTTACTCTTTTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCTGAGCCTAAATCTTCCCAACATAAGCCTTGGTTACTCTTTTCA  734

seq1  TCTCTAATCTGTTTTCCACTTGACACAGTGCACTTCCCTATCTTTCTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATCTGTTTTCCACTTGACACAGTGCACTTCCCTATCTTTCTTTT  784

seq1  GGGAAACAAACTATTCCCTTTCCTTTTCCTTTCTAGGAGAAATTCTTCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACAAACTATTCCCTTTCCTTTTCCTTTCTAGGAGAAATTCTTCTC  834

seq1  TCTCCCTTCTTGGGATATACATACTCTATTGTAAGACCTCCATCAAATCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTCTTGGGATATACATACTCTATTGTAAGACCTCCATCAAATCA  884

seq1  TTCAGAAACTTATATGGTGGTTTTTCCATGTTCTTCTGGATACCTGAAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAACTTATATGGTGGTTTTTCCATGTTCTTCTGGATACCTGAAGA  934

seq1  CTGTACTTAAGTATTCTGAGCTAGATTTATGGGCATTTGTGAGCTACCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTAAGTATTCTGAGCTAGATTTATGGGCATTTGTGAGCTACCTA  984

seq1  ATGTCGTTGCTGAGAAATAAAGTTTGGTTGTCTGTAACTACAAACAAACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGTTGCTGAGAAATAAAGTTTGGTTGTCTGTAACTACAAACAAACA  1034

seq1  GGTGAGCCGTCTTTGTGGTAACTGCTGATATAGTTCTTAATGACTGGACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCCGTCTTTGTGGTAACTGCTGATATAGTTCTTAATGACTGGACT  1084

seq1  GAAAAGCAATTGAATTC  1115
      |||||||||||||||||
seq2  GAAAAGCAATTGAATTC  1101


| Home | SequenceCutter | Blast | Download |