BAC Information

Click to search

BAC

Clone NameB6Ng01-266P03
Chromosome3 (Build37)
Map Location 68,262,690 - 68,377,161
singlet/doubletdoublet
Overlap geneSchip1
Upstream geneGfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426, EG545531, LOC631379
Downstream geneIl12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l, LOC667309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266P03.bB6Ng01-266P03.g
ACCGA070211GA070212
length1,1281,083
definitionB6Ng01-266P03.b B6Ng01-266P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,262,690 - 68,263,807)(68,376,078 - 68,377,161)
sequence
ttgggagctcttctccaaggctacaacccatcctgcttccagttttcatt
gtcattgtctcagttattggcatccaaggagcaagagagagaaaagtgga
tgtgtgaggggaaatagataggagccaggaaaggaagccagcccagcctt
aggaggagctcctaacccaatggctccacctcctgactcttgaatccctc
ttccctagagcagtgtcctcattgggggtataattagtctgggcattcat
tagtaggaactttcaaagatccataaacatatagagttttaaataagtta
aagtccatatctcatatgaaatgttctatctgagaaaccccatcccagca
tcctttcccaacagagttcttccagcatcttgtggtggtaatctgtactg
gtgcacaaagtaccctgagacccaagccggaaataaaagtaaagataatc
tgaaataatattaatttaaaggttggaaaggatagcaacaaaatgaatga
ccttgatgtccaggtaccacattcctgtgcaagtcaagtggttgctaaat
ctttgccttcaataaaattgaaatgggattgaattcagatggcagttgat
agattattgtcaagtgttattataggtcatttcacgcatgtaactgtgtg
agagcccagtgacatgacaggaactgccttcatccctattgccatgaaca
agattgctgtttccattgagtacatttttttttattttaaattatttatt
cctaatatacttaccaaatgttataaaattcccacccagctttgatcagc
agtggtacactagtcaggatgatgaggcctgccttacaattgccagcgca
ccattgcagggcatatagaagctgctattgttcagtttttatttagtagt
agtagtagtagtagtagtagtagtagtagtacgtggtcgcgtccgtctct
cgaccagcaaggaacaacacgaacaaccaggtccttctaacagcaattat
tcagcaaactttcaggtcttcattctctctgcatgctcttcatctaatct
ccccactaaataatgatctgctccgaataaataatcctcctccggataaa
atatcctttaactaaccggggctctctc
gaattcctaaccccagatagcaaattagcacattaaaagatgaacatgtg
ttactgaatattttttctatgtgaagtttgtaatccacactggtactatc
attttttacctgctaatcatttaaaagagcatactggcaaaaacagcttc
ataaagatatcagtgcaacttgaaatgccaaatgcctgctgactgattta
tgaaaaattctaagatcgtcaatcaggacttttaaatgtaaataattttc
tcatagacagtcttaaaaactggactctaattaactgacctcttatgcaa
tgaacaataatcacatttttttttcagttgtgagcacgcatcaccaccat
gtattccacaaacgcttttaaaggaaggccaaagaagcggcgtttctgcc
ccattactcctcagaaagcctcattagaattcagatactgtatgcaatga
aggccgggagtggagcccaggatggcaaaaatcccctgaaaatccagtaa
gaggcaacctgctgccctagaagagcaaggcctctcccatagggtaaggg
cctcagaatcaagcttccaaccttacctggtacgagcagttctcctgatg
taccatctcagtacatcctaggacgcagaccccaaagctggactgctggg
cgaggctgcgcagggaaagcgctgagcatccacaggcgcgagagaacgcc
ctggttaggcagggactccccgcagattaaaatggatgctgttccgctga
gcaacctgcgcagtggcactgcctgtgctgggaagcgcgcagccaccgag
ctcgctctgaagcctccaagctgctctgctcctccggaaccgggaggcag
gctgctgagccgagctgggaccggcctgggggagggggcgggcgcatcac
ccgcacaatcagccaattatattataggcacaaagaaaaggatctgtctg
gggctggtgtgaccttctggtgctttatgaaggcagttaaccgatgtgaa
acattctagtactcatataagaagaaaaagccagcgaggagaagagagag
tgacagacacaaatcattattgcagctgggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_68262690_68263807
seq2: B6Ng01-266P03.b_52_1179

seq1  TTGGGAGCTCTTCTCCAAGGCTACAACCCATCCTGCTTCCAGTTTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCTCTTCTCCAAGGCTACAACCCATCCTGCTTCCAGTTTTCATT  50

seq1  GTCATTGTCTCAGTTATTGGCATCCAAGGAGCAAGAGAGAGAAAAGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGTCTCAGTTATTGGCATCCAAGGAGCAAGAGAGAGAAAAGTGGA  100

seq1  TGTGTGAGGGGAAATAGATAGGAGCCAGGAAAGGAAGCCAGCCCAGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGGGGAAATAGATAGGAGCCAGGAAAGGAAGCCAGCCCAGCCTT  150

seq1  AGGAGGAGCTCCTAACCCAATGGCTCCACCTCCTGACTCTTGAATCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGCTCCTAACCCAATGGCTCCACCTCCTGACTCTTGAATCCCTC  200

seq1  TTCCCTAGAGCAGTGTCCTCATTGGGGGTATAATTAGTCTGGGCATTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAGAGCAGTGTCCTCATTGGGGGTATAATTAGTCTGGGCATTCAT  250

seq1  TAGTAGGAACTTTCAAAGATCCATAAACATATAGAGTTTTAAATAAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGAACTTTCAAAGATCCATAAACATATAGAGTTTTAAATAAGTTA  300

seq1  AAGTCCATATCTCATATGAAATGTTCTATCTGAGAAACCCCATCCCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATATCTCATATGAAATGTTCTATCTGAGAAACCCCATCCCAGCA  350

seq1  TCCTTTCCCAACAGAGTTCTTCCAGCATCTTGTGGTGGTAATCTGTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCCAACAGAGTTCTTCCAGCATCTTGTGGTGGTAATCTGTACTG  400

seq1  GTGCACAAAGTACCCTGAGACCCAAGCCGGAAATAAAAGTAAAGATAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAAAGTACCCTGAGACCCAAGCCGGAAATAAAAGTAAAGATAATC  450

seq1  TGAAATAATATTAATTTAAAGGTTGGAAAGGATAGCAACAAAATGAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAATATTAATTTAAAGGTTGGAAAGGATAGCAACAAAATGAATGA  500

seq1  CCTTGATGTCCAGGTACCACATTCCTGTGCAAGTCAAGTGGTTGCTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATGTCCAGGTACCACATTCCTGTGCAAGTCAAGTGGTTGCTAAAT  550

seq1  CTTTGCCTTCAATAAAATTGAAATGGGATTGAATTCAGATGGCAGTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTTCAATAAAATTGAAATGGGATTGAATTCAGATGGCAGTTGAT  600

seq1  AGATTATTGTCAAGTGTTATTATAGGTCATTTCACGCATGTAACTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTGTCAAGTGTTATTATAGGTCATTTCACGCATGTAACTGTGTG  650

seq1  AGAGCCCAGTGACATGACAGGAACTGCCTTCATCCCTATTGCCATGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCAGTGACATGACAGGAACTGCCTTCATCCCTATTGCCATGAACA  700

seq1  AGATTGCTGTTTCCATTGAGTACATTTTTTTTTATTTTAAATTATTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCTGTTTCCATTGAGTACATTTTTTTTTATTTTAAATTATTTATT  750

seq1  CCTAATATACTTACCAAATGTTATAAAATTCCCACCCAGCTTTGATCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATACTTACCAAATGTTATAAAATTCCCACCCAGCTTTGATCAGC  800

seq1  AGTGGTACACTAGTCAGGATGATGAGGCCTGCCTTACAATTGCCAGCGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTACACTAGTCAGGATGATGAGGCCTGCCTTACAATTGCCAGCGCA  850

seq1  CCATTGCA-GGCATATAGAAGCTGCTATTGTTCAGTTTTTATTTAGTAGT  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCAGGGCATATAGAAGCTGCTATTGTTCAGTTTTTATTTAGTAGT  900

seq1  AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACGTTGTCGCGTCCG-CTCT  948
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACGTGGTCGCGTCCGTCTCT  950

seq1  CGACCAGCAA-GAACAACACG-ACCACCA-GTCCTTCTAACAGCAGTTTA  995
      |||||||||| |||||||||| || |||| |||||||||||||||  |||
seq2  CGACCAGCAAGGAACAACACGAACAACCAGGTCCTTCTAACAGCA-ATTA  999

seq1  TTCAGCAAAC-TTCA-GTCTTCA-TCTCTCTTCTTTCTCTTCATCTATAT  1042
      |||||||||| |||| ||||||| ||||||| | | ||||||||||| ||
seq2  TTCAGCAAACTTTCAGGTCTTCATTCTCTCTGCATGCTCTTCATCTA-AT  1048

seq1  CT-CCCACT-AATAATAATCCTCTCTCGAAT-AATAATCCTCTCTCGAAT  1089
      || |||||| |||||| |||  ||| ||||| ||||||||||   || ||
seq2  CTCCCCACTAAATAATGATCTGCTC-CGAATAAATAATCCTCCTCCGGAT  1097

seq1  AATA-ATCCTTTAACTAACCCGGGC-CTCTC  1118
      || | ||||||||||||||| |||| |||||
seq2  AAAATATCCTTTAACTAACCGGGGCTCTCTC  1128

seq1: chr3_68376078_68377161
seq2: B6Ng01-266P03.g_68_1150 (reverse)

seq1  ATGCCCAACTGCAATATTGATTTGTGTCTGTCACTCTCTCTCTCCCTCGC  50
      ||||||| |||||||| ||||||||||||||||||||||||   ||||||
seq2  ATGCCCAGCTGCAATAATGATTTGTGTCTGTCACTCTCTCTTCTCCTCGC  50

seq1  TGGCCTTTTTCTCTATAATGAGTACTAGAATGTTTCCACATCGGTTAACT  100
      |||| ||||  |||   |||||||||||||||||| ||||||||||||||
seq2  TGGCTTTTTCTTCTTATATGAGTACTAGAATGTTT-CACATCGGTTAACT  99

seq1  GCCTTCATAAAGCACCAGAAGGTCACACCAGCCCCAGACAGATCCTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCATAAAGCACCAGAAGGTCACACCAGCCCCAGACAGATCCTTTTC  149

seq1  TTTGTGCCTATAATATAATTGGCTGATTGTGCGGGTGATGCGCCCGCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCCTATAATATAATTGGCTGATTGTGCGGGTGATGCGCCCGCCCC  199

seq1  CTCCCCCAGGCCGGTCCCAGCTCGGCTCAGCAGCCTGCCTCCCGGTTCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCAGGCCGGTCCCAGCTCGGCTCAGCAGCCTGCCTCCCGGTTCCG  249

seq1  GAGGAGCAGAGCAGCTTGGAGGCTTCAGAGCGAGCTCGGTGGCTGCGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCAGAGCAGCTTGGAGGCTTCAGAGCGAGCTCGGTGGCTGCGCGC  299

seq1  TTCCCAGCACAGGCAGTGCCACTGCGCAGGTTGCTCAGCGGAACAGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCACAGGCAGTGCCACTGCGCAGGTTGCTCAGCGGAACAGCATC  349

seq1  CATTTTAATCTGCGGGGAGTCCCTGCCTAACCAGGGCGTTCTCTCGCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATCTGCGGGGAGTCCCTGCCTAACCAGGGCGTTCTCTCGCGCC  399

seq1  TGTGGATGCTCAGCGCTTTCCCTGCGCAGCCTCGCCCAGCAGTCCAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGCTCAGCGCTTTCCCTGCGCAGCCTCGCCCAGCAGTCCAGCTT  449

seq1  TGGGGTCTGCGTCCTAGGATGTACTGAGATGGTACATCAGGAGAACTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCTGCGTCCTAGGATGTACTGAGATGGTACATCAGGAGAACTGCT  499

seq1  CGTACCAGGTAAGGTTGGAAGCTTGATTCTGAGGCCCTTACCCTATGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACCAGGTAAGGTTGGAAGCTTGATTCTGAGGCCCTTACCCTATGGGA  549

seq1  GAGGCCTTGCTCTTCTAGGGCAGCAGGTTGCCTCTTACTGGATTTTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTTGCTCTTCTAGGGCAGCAGGTTGCCTCTTACTGGATTTTCAGG  599

seq1  GGATTTTTGCCATCCTGGGCTCCACTCCCGGCCTTCATTGCATACAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTGCCATCCTGGGCTCCACTCCCGGCCTTCATTGCATACAGTAT  649

seq1  CTGAATTCTAATGAGGCTTTCTGAGGAGTAATGGGGCAGAAACGCCGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTCTAATGAGGCTTTCTGAGGAGTAATGGGGCAGAAACGCCGCTT  699

seq1  CTTTGGCCTTCCTTTAAAAGCGTTTGTGGAATACATGGTGGTGATGCGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCCTTCCTTTAAAAGCGTTTGTGGAATACATGGTGGTGATGCGTG  749

seq1  CTCACAACTGAAAAAAAAATGTGATTATTGTTCATTGCATAAGAGGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACTGAAAAAAAAATGTGATTATTGTTCATTGCATAAGAGGTCAG  799

seq1  TTAATTAGAGTCCAGTTTTTAAGACTGTCTATGAGAAAATTATTTACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGAGTCCAGTTTTTAAGACTGTCTATGAGAAAATTATTTACATT  849

seq1  TAAAAGTCCTGATTGACGATCTTAGAATTTTTCATAAATCAGTCAGCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTCCTGATTGACGATCTTAGAATTTTTCATAAATCAGTCAGCAGG  899

seq1  CATTTGGCATTTCAAGTTGCACTGATATCTTTATGAAGCTGTTTTTGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGCATTTCAAGTTGCACTGATATCTTTATGAAGCTGTTTTTGCCA  949

seq1  GTATGCTCTTTTAAATGATTAGCAGGTAAAAAATGATAGTACCAGTGTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTCTTTTAAATGATTAGCAGGTAAAAAATGATAGTACCAGTGTGG  999

seq1  ATTACAAACTTCACATAGAAAAAATATTCAGTAACACATGTTCATCTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAACTTCACATAGAAAAAATATTCAGTAACACATGTTCATCTTTT  1049

seq1  AATGTGCTAATTTGCTATCTGGGGTTAGGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  AATGTGCTAATTTGCTATCTGGGGTTAGGAATTC  1083