BAC Information

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BAC

Clone NameB6Ng01-267H12
Chromosome3 (Build37)
Map Location 140,472,024 - 140,473,198
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2, Unc5c, LOC100039923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267H12.bB6Ng01-267H12.g
ACCGA070580GA070581
length7321,151
definitionB6Ng01-267H12.b B6Ng01-267H12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctcattcagtaacagaactacccattattagtgattgatattt
ggatgtgcatataaaagaaaagacagagagattcattctaacctaaatca
ttcatcattcattcattctctctctctctctctctctctctctctctctc
tctctctctctctctctctctctctctctctctctctctctctctctctc
tctctctctcccccccccccccccccccccactctctttgtttgtgtgtg
ttattgtagtttattattctatatctctacatatatctcgagcgatttct
ctatagtgtttcactataacaatcactttgtggtatatctggggcagaca
tcgagagcagtgagagaaaaagtgactatcactgagacttgcccaaggga
gtggggaggggggggggatgtgtgtgtatgtgtgtgagtccgcgcgacac
acatagacgtgctataagtgcttatacagtccttcacaatacagagccgt
gagagagacgatatagtatagagatgtcgatatagtgtgatacagtgagt
cacatataatacagatagatatatattagagagagtgagcgactctctct
acacatctctctctctcacatcgaaactatattactcacacagacaacat
atatatatacatgactctctcctcagacataatatacatattgcagccag
gctggagagtctggagtgttgttccataatac

gaattcacggaatgagataataaggtggcttcatgtgtttgagggctgcc
attgattttcaagttaagattaaataaaaaccattagtttctctccccct
cccatttttttttcaaaaaagtgttattgtttacctgtgatttcagatac
tgtttttgtaaattaacagtaaatgtttgtttgttatttccatagagttt
agagaccattaaagtcacaatcaataatggaaataataaataaattatca
tttttcataaacattaaaccaggaaataaatccttagagagctgttatta
taaatatcataaatgtcttaatatagagccattgtgagaatcattaaaaa
gtgatctttatttctgaaacacttgtacaaatctgtctgttaggctctgt
cctaagagctttaaaaatattacataattttaattttctttagattctgt
gtgatgctggtactagaatttctagtcaatttgaaggcaatgaaaaagaa
aaataaagccaggtgctttctcaggatgtacaaaattgtacagtgctcaa
gcccgtgtccactggctctcagtttcattctcttagccactgtatactct
ggactctcttcttttgaacaaagctgtgaacaagataaagagaaagatac
aggacatgccaatatttataggaatgcatatatacttataaaagggacaa
attcaaaagatgacttatttggaatagggcataaagaaaggcccatcgaa
accaccgagttgatactgaagagatacgagaagctctgaactatcaccca
ctagatcaactaggtaaaataaagttaactagttagagaaactagtatta
aatggcttcaccataagaaagtaaccaatatgtgtgcagatagatatgtt
tgtattgattcaaatattatacaacatagcaaaacatggtactaaatact
aagttatgtttgtacgcatatatccagtatattagatttaacataaactg
gacaaagtacagataacatgaaactagagcagttggtatagatagatatg
agtaaggatgatatgagatgcatctaaatattagtttttttctagagagg
tagaagcataatgctctgaagaatatgaatgctattgttggaaatctctg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140472024_140473198
seq2: B6Ng01-267H12.g_65_1215

seq1  GAATTCACGGAATGAGATAATAAGGTGGCTTCATGTGTTTGAGGGCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGGAATGAGATAATAAGGTGGCTTCATGTGTTTGAGGGCTGCC  50

seq1  ATTGATTTTCAAGTTAAGATTAAATAAAAACCATTAGTTTCTCTCCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTTCAAGTTAAGATTAAATAAAAACCATTAGTTTCTCTCCCCCT  100

seq1  CCCATTTTTTTTTCAAAAAAGTGTTATTGTTTACCTGTGATTTCAGATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTTTTTTCAAAAAAGTGTTATTGTTTACCTGTGATTTCAGATAC  150

seq1  TGTTTTTGTAAATTAACAGTAAATGTTTGTTTGTTATTTCCATAGAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTAAATTAACAGTAAATGTTTGTTTGTTATTTCCATAGAGTTT  200

seq1  AGAGACCATTAAAGTCACAATCAATAATGGAAATAATAAATAAATTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCATTAAAGTCACAATCAATAATGGAAATAATAAATAAATTATCA  250

seq1  TTTTTCATAAACATTAAACCAGGAAATAAATCCTTAGAGAGCTGTTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATAAACATTAAACCAGGAAATAAATCCTTAGAGAGCTGTTATTA  300

seq1  TAAATATCATAAATGTCTTAATATAGAGCCATTGTGAGAATCATTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCATAAATGTCTTAATATAGAGCCATTGTGAGAATCATTAAAAA  350

seq1  GTGATCTTTATTTCTGAAACACTTGTACAAATCTGTCTGTTAGGCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTTTATTTCTGAAACACTTGTACAAATCTGTCTGTTAGGCTCTGT  400

seq1  CCTAAGAGCTTTAAAAATATTACATAATTTTAATTTTCTTTAGATTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGCTTTAAAAATATTACATAATTTTAATTTTCTTTAGATTCTGT  450

seq1  GTGATGCTGGTACTAGAATTTCTAGTCAATTTGAAGGCAATGAAAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCTGGTACTAGAATTTCTAGTCAATTTGAAGGCAATGAAAAAGAA  500

seq1  AAATAAAGCCAGGTGCTTTCTCAGGATGTACAAAATTGTACAGTGCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCCAGGTGCTTTCTCAGGATGTACAAAATTGTACAGTGCTCAA  550

seq1  GCCCGTGTCCACTGGCTCTCAGTTTCATTCTCTTAGCCACTGTATACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTGTCCACTGGCTCTCAGTTTCATTCTCTTAGCCACTGTATACTCT  600

seq1  GGACTCTCTTCTTTTGAACAAAGCTGTGAACAAGATAAAGAGAAAGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTCTTCTTTTGAACAAAGCTGTGAACAAGATAAAGAGAAAGATAC  650

seq1  AGGACATGCCAATATTTATAGGAATGCATATATACTTATAAAAGGGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGCCAATATTTATAGGAATGCATATATACTTATAAAAGGGACAA  700

seq1  ATTCAAAAGATGACTTATTTGGAATAGGGCATAAAGAAAGGCCCATCGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAAGATGACTTATTTGGAATAGGGCATAAAGAAAGGCCCATCGAA  750

seq1  ACCACCGAGTTGATACTGAAGAGATACGAGAAGCTCTGAACTATCACCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCGAGTTGATACTGAAGAGATACGAGAAGCTCTGAACTATCACCCA  800

seq1  CTAGATCAACTAGGTAAAATAAAGTTAACTAGTTAGAGAAACTAGTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCAACTAGGTAAAATAAAGTTAACTAGTTAGAGAAACTAGTATTA  850

seq1  AATGGCTTCACCATAAGAAAGTAACCAATATGTGTGCAGATAGATATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTCACCATAAGAAAGTAACCAATATGTGTGCAGATAGATATGTT  900

seq1  TGTATTGATTCAAATATTATACAACATAGCAAAACATGGTACTAAATACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGATTCAAATATTATACAACATAGCAAAACATGGTACTAAATACT  950

seq1  AAGTTATGTTTGTACGCATATATCCAAGTATATTAGATTTAACAATAAAC  1000
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  AAGTTATGTTTGTACGCATATATCC-AGTATATTAGATTTAAC-ATAAAC  998

seq1  TGGACAAAGTACAGATAACATGAAACTAAGAGCAGTTGGTATAGATAGAA  1050
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TGGACAAAGTACAGATAACATGAAACT-AGAGCAGTTGGTATAGATAG-A  1046

seq1  TATGAGTAAAGGAATGATAATGGAGATGGAATCTAAAATATTTAGTTTTT  1100
      |||||||||  | ||||||   ||||| | |||| ||||| |||||||||
seq2  TATGAGTAA--GGATGATA--TGAGAT-GCATCT-AAATA-TTAGTTTTT  1089

seq1  TTCCTAAGAGAAGTAGGAAGCCAATAAAATGCTCTGAAGAATAATGAATG  1150
      |||   ||||| ||| |||||    | ||||||||||||||| |||||||
seq2  TTC--TAGAGAGGTA-GAAGC----ATAATGCTCTGAAGAAT-ATGAATG  1131

seq1  CTCTATTGTGTGAGAAAATCTCTGA  1175
        |||||||    | ||||||||||
seq2  --CTATTGT---TGGAAATCTCTGA  1151


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