BAC Information

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BAC

Clone NameB6Ng01-268C02
Chromosome3 (Build37)
Map Location 38,564,289 - 38,693,231
singlet/doubletdoublet
Overlap genenone
Upstream geneEG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
Downstream geneFat4, LOC100041432, LOC100040853, LOC100041443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268C02.bB6Ng01-268C02.g
ACCGA071072GA071073
length1,0191,174
definitionB6Ng01-268C02.b B6Ng01-268C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,692,212 - 38,693,231)(38,564,289 - 38,565,467)
sequence
gaattcctatatccgtactcagaggcatgggattatggaggtaccatgct
cacctggcatgtaagttgttctgtggctccagacctggagcctcacattt
gcatgcaagcactttgtatcctgagctaccttctcatcactgggtctttg
tttttatggtgaaagtaaggcaacaaacccccttaaatgttccctagctt
ggtttgcatttccccagtgttagaattacatcatctgcctgtgcagaagc
cagtgctagggccttctgaggacactcctccgcgggagcctcacatttct
gcctaggctgaaaacgaggcactcccggtccttctttccaagtgtttttt
tataactaaattcatgaaacataatttttcaaaaacaaacaaataatagt
ttctaccagcaaaggatgggtttactcacaccagtgaaagttgaagacaa
tgtttcacgagaagaaaggaacccatctatggtctaacatgagagacaga
ggcaccatcagtgctggggtcatctttagtaagcctcgctctgtgtcttg
ctctgggaagggaaggcttatagaacagatgcaaggtggctgtcagtgtg
gcttctgccactgtgggtgtgtcctaggctggcctcacacctgacccagt
agtagaaacctatgaaagtgtggttactcaagtgttgggtgggaagaaag
ggaaagcattcaaggacccctcgggtaacaatggggagaacagagattct
tatcagtcctttaagagaaacttgacataataacaacatggccaaacatg
cctctgtattgttgccgtttaaaccttgtcctgaaaggcctcagctgttg
atatcattgcttcacttccctccattactactcagctgcttatagcaaac
agaaaatttatgccagatactcaataataaagacattaatttaaacatgt
gtttattagtaacaagatcggtctgtcaatcagaatagatcattgtcttt
gacaagcccagcaagccta
gaattcaagtgaacaggtccccaacttacttacttccattttgttaatgt
ggtttctcagttatttatgcttacagtttttatctttttaaatggaaaat
gtttgaaaacggggaaatgaatagagaggactcttcggggtcccatggta
tgaaactttagattgcaacatttgtttatgagtgaacaagccccatgtta
ttttttctgagaagatgggaccaagtccagattattattggagagatatt
agagttcggctcatgctatattctcagatctcactcagtgaagttaccac
caatatgtattgataaaacctaatgtgcataccacggcctgccaaggcca
cctctgttgatgtgattcacgtagaatctgaggaagagaggtgcctgggg
ctctctttgcctgggcttccggatggttacttgtggatagtatacagaga
ggctgcatttctcaaaccaagggctccctgtcttccacctcagcccagct
ggtacccgagggcatgtttgcatttttcctgctttttgttcattgagatg
aaggcttcagtgggtccacaggaatgtgagtgaaggctagcccaggccag
cattcttccaacactcatttgaaagtgttttttattgtatatcagcagga
agcagtgggaaggtatgtcagactctggcttccttctgttgtttcatata
acaggacttgtgtttctgaaattctcaacctgtctactgtagagagaggc
ctctgtgattccagcattggagagagctgggacaggtatacaaccaccgt
atgaggaatctttagatgtgagaggttcattaattctcacatcagacagc
cctgatcgaagtgaatcccccaccccaccccaggacccctatgcatcttc
actcctgtgtctagagaaacagtcacagaagaaaggctgttggagcggac
ttgggctctgagcccggctcattatttggtgtttacagcagagggctcca
agctgaaacaccactttactttcaggagtctgctttgtctttgctttacc
agcagctctggctgccttttctaagacgactgcagcagctaaattcttat
tcaggtgataaaggtgctagggaataaaggtccttcactgacaaccaggc
aatctctgagtttatcccgtttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38692212_38693231
seq2: B6Ng01-268C02.b_46_1064 (reverse)

seq1  TAGGCTTGGCTGGGCTTGTCCAAAAGACAATGATCTA-TCTGATTGGACA  49
      ||||||| ||||||||||||  ||||||||||||||| ||||||| ||||
seq2  TAGGCTT-GCTGGGCTTGTC--AAAGACAATGATCTATTCTGATT-GACA  46

seq1  GGACCGATC-TGTTACTAATAAACACATTGTTTAATTAATGTCTTTTATT  98
       |||||||| ||||||||||||||||||  || |||||||||| ||||||
seq2  -GACCGATCTTGTTACTAATAAACACATGTTTAAATTAATGTC-TTTATT  94

seq1  ATTGAGTATCTGGCATAA--TTTCTGTTTGCTATAAGCAGCTGAGTAGTA  146
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  ATTGAGTATCTGGCATAAATTTTCTGTTTGCTATAAGCAGCTGAGTAGTA  144

seq1  ATGGAGGGAAGTGAAGCAATGATATCAACAGCTGAGGCC-TTCAGGACAA  195
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGGAGGGAAGTGAAGCAATGATATCAACAGCTGAGGCCTTTCAGGACAA  194

seq1  GGTTTAAACGGCAACAATACAGAGGCATGTTTGGCCATGTTGTTATTATG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAACGGCAACAATACAGAGGCATGTTTGGCCATGTTGTTATTATG  244

seq1  TCAAGTTTCTCTTAAAGGACTGATAAGAATCTCTGTTCTCCCCATTGTTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTCTCTTAAAGGACTGATAAGAATCTCTGTTCTCCCCATTGTTA  294

seq1  CCCGAGGGGTCCTTGAATGCTTTCCCTTTCTTCCCACCCAACACTTGAGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGGGTCCTTGAATGCTTTCCCTTTCTTCCCACCCAACACTTGAGT  344

seq1  AACCACACTTTCATAGGTTTCTACTACTGGGTCAGGTGTGAGGCCAGCCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACTTTCATAGGTTTCTACTACTGGGTCAGGTGTGAGGCCAGCCT  394

seq1  AGGACACACCCACAGTGGCAGAAGCCACACTGACAGCCACCTTGCATCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACACCCACAGTGGCAGAAGCCACACTGACAGCCACCTTGCATCTG  444

seq1  TTCTATAAGCCTTCCCTTCCCAGAGCAAGACACAGAGCGAGGCTTACTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAGCCTTCCCTTCCCAGAGCAAGACACAGAGCGAGGCTTACTAA  494

seq1  AGATGACCCCAGCACTGATGGTGCCTCTGTCTCTCATGTTAGACCATAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACCCCAGCACTGATGGTGCCTCTGTCTCTCATGTTAGACCATAGA  544

seq1  TGGGTTCCTTTCTTCTCGTGAAACATTGTCTTCAACTTTCACTGGTGTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCCTTTCTTCTCGTGAAACATTGTCTTCAACTTTCACTGGTGTGA  594

seq1  GTAAACCCATCCTTTGCTGGTAGAAACTATTATTTGTTTGTTTTTGAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCCATCCTTTGCTGGTAGAAACTATTATTTGTTTGTTTTTGAAAA  644

seq1  ATTATGTTTCATGAATTTAGTTATAAAAAAACACTTGGAAAGAAGGACCG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTTCATGAATTTAGTTATAAAAAAACACTTGGAAAGAAGGACCG  694

seq1  GGAGTGCCTCGTTTTCAGCCTAGGCAGAAATGTGAGGCTCCCGCGGAGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCCTCGTTTTCAGCCTAGGCAGAAATGTGAGGCTCCCGCGGAGGA  744

seq1  GTGTCCTCAGAAGGCCCTAGCACTGGCTTCTGCACAGGCAGATGATGTAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCAGAAGGCCCTAGCACTGGCTTCTGCACAGGCAGATGATGTAA  794

seq1  TTCTAACACTGGGGAAATGCAAACCAAGCTAGGGAACATTTAAGGGGGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACACTGGGGAAATGCAAACCAAGCTAGGGAACATTTAAGGGGGTT  844

seq1  TGTTGCCTTACTTTCACCATAAAAACAAAGACCCAGTGATGAGAAGGTAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTTACTTTCACCATAAAAACAAAGACCCAGTGATGAGAAGGTAG  894

seq1  CTCAGGATACAAAGTGCTTGCATGCAAATGTGAGGCTCCAGGTCTGGAGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGATACAAAGTGCTTGCATGCAAATGTGAGGCTCCAGGTCTGGAGC  944

seq1  CACAGAACAACTTACATGCCAGGTGAGCATGGTACCTCCATAATCCCATG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACAACTTACATGCCAGGTGAGCATGGTACCTCCATAATCCCATG  994

seq1  CCTCTGAGTACGGATATAGGAATTC  1020
      |||||||||||||||||||||||||
seq2  CCTCTGAGTACGGATATAGGAATTC  1019

seq1: chr3_38564289_38565467
seq2: B6Ng01-268C02.g_64_1237

seq1  GAATTCAAGTGAACAGGTCCCCAACTTACTTACTTCCATTTTGTTAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGAACAGGTCCCCAACTTACTTACTTCCATTTTGTTAATGT  50

seq1  GGTTTCTCAGTTATTTATGCTTACAGTTTTTATCTTTTTAAATGGAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCAGTTATTTATGCTTACAGTTTTTATCTTTTTAAATGGAAAAT  100

seq1  GTTTGAAAACGGGGAAATGAATAGAGAGGACTCTTCGGGGTCCCATGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAACGGGGAAATGAATAGAGAGGACTCTTCGGGGTCCCATGGTA  150

seq1  TGAAACTTTAGATTGCAACATTTGTTTATGAGTGAACAAGCCCCATGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTTAGATTGCAACATTTGTTTATGAGTGAACAAGCCCCATGTTA  200

seq1  TTTTTTCTGAGAAGATGGGACCAAGTCCAGATTATTATTGGAGAGATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTGAGAAGATGGGACCAAGTCCAGATTATTATTGGAGAGATATT  250

seq1  AGAGTTCGGCTCATGCTATATTCTCAGATCTCACTCAGTGAAGTTACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCGGCTCATGCTATATTCTCAGATCTCACTCAGTGAAGTTACCAC  300

seq1  CAATATGTATTGATAAAACCTAATGTGCATACCACGGCCTGCCAAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGTATTGATAAAACCTAATGTGCATACCACGGCCTGCCAAGGCCA  350

seq1  CCTCTGTTGATGTGATTCACGTAGAATCTGAGGAAGAGAGGTGCCTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTGATGTGATTCACGTAGAATCTGAGGAAGAGAGGTGCCTGGGG  400

seq1  CTCTCTTTGCCTGGGCTTCCGGATGGTTACTTGTGGATAGTATACAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTGCCTGGGCTTCCGGATGGTTACTTGTGGATAGTATACAGAGA  450

seq1  GGCTGCATTTCTCAAACCAAGGGCTCCCTGTCTTCCACCTCAGCCCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCATTTCTCAAACCAAGGGCTCCCTGTCTTCCACCTCAGCCCAGCT  500

seq1  GGTACCCGAGGGCATGTTTGCATTTTTCCTGCTTTTTGTTCATTGAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCGAGGGCATGTTTGCATTTTTCCTGCTTTTTGTTCATTGAGATG  550

seq1  AAGGCTTCAGTGGGTCCACAGGAATGTGAGTGAAGGCTAGCCCAGGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCAGTGGGTCCACAGGAATGTGAGTGAAGGCTAGCCCAGGCCAG  600

seq1  CATTCTTCCAACACTCATTTGAAAGTGTTTTTTATTGTATATCAGCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCCAACACTCATTTGAAAGTGTTTTTTATTGTATATCAGCAGGA  650

seq1  AGCAGTGGGAAGGTATGTCAGACTCTGGCTTCCTTCTGTTGTTTCATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGGAAGGTATGTCAGACTCTGGCTTCCTTCTGTTGTTTCATATA  700

seq1  ACAGGACTTGTGTTTCTG-AATTCTCAACCTGTCTACTGTAGAGAGAGGC  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAGGACTTGTGTTTCTGAAATTCTCAACCTGTCTACTGTAGAGAGAGGC  750

seq1  CTCTGTGATTCCAGCATTGGAGAGAGCTGGGACAGGTATACAACCACCGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGATTCCAGCATTGGAGAGAGCTGGGACAGGTATACAACCACCGT  800

seq1  ATGAGGAATCTTTAGATGTGAGAGGTTCATTAATTCTCACATCAGACAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAATCTTTAGATGTGAGAGGTTCATTAATTCTCACATCAGACAGC  850

seq1  CCTGATCGAAGTGAATCCCCCACCCCACCCCAGGACCCCTATGCATCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCGAAGTGAATCCCCCACCCCACCCCAGGACCCCTATGCATCTTC  900

seq1  ACTCCTGTGTCTAGAGAAACAGTCACAGAAGAAAGGCTGTTGGAGCGGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTGTCTAGAGAAACAGTCACAGAAGAAAGGCTGTTGGAGCGGAC  950

seq1  TTGGGCTCTGAGGCCGGCTCATTATTTGGTGTTTACAGCAGAGGGCTCCA  999
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTCTGAGCCCGGCTCATTATTTGGTGTTTACAGCAGAGGGCTCCA  1000

seq1  AGCTGAAACACCACTTTAACTTTCAGGAGTCTGCTTTGTCTTTGCTTTAC  1049
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  AGCTGAAACACCACTTT-ACTTTCAGGAGTCTGCTTTGTCTTTGCTTTA-  1048

seq1  CCAGCCAGCTCCTGGCTGCCTTTTCTAAGACGACTGCCAGCAGCCTAATT  1099
      |||| ||||| ||||||||||||||||||||||||| |||||| |||| |
seq2  CCAG-CAGCT-CTGGCTGCCTTTTCTAAGACGACTG-CAGCAG-CTAAAT  1094

seq1  TCTATAATTCAGGTGATAAAAGTGCTAAGG-ATAAAAGTCCTTCACTGAC  1148
      ||  | |||||||||||||| |||||| || ||||| |||||||||||||
seq2  TC--TTATTCAGGTGATAAAGGTGCTAGGGAATAAAGGTCCTTCACTGAC  1142

seq1  AAACAGCAAATCTCT-AATTTATTCCGTTTAA  1179
      || |||  ||||||| | ||||| ||||||||
seq2  AACCAGGCAATCTCTGAGTTTATCCCGTTTAA  1174