BAC Information

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BAC

Clone NameB6Ng01-268I02
Chromosome3 (Build37)
Map Location 89,002,445 - 89,167,338
singlet/doubletdoublet
Overlap geneGba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1
Upstream geneAI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik
Downstream geneDcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268I02.bB6Ng01-268I02.g
ACCGA071343GA071344
length998418
definitionB6Ng01-268I02.b B6Ng01-268I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,166,344 - 89,167,338)(89,002,445 - 89,002,868)
sequence
gaattcaagatttcctgcctacacagtatgttccatgtcagtctgggttg
ccaaggaatggccctggctagaggtttttaggttacaaaatacctaccac
aactccacctagcacatctctgtgcattattctcaaagaccagagaagaa
acatgtctctcctgcccctgttcagaaaccaggaaaactttctaggaggc
atttcacacctctctttacagtaactgataccttccctaaatctgtccga
acccaggggcatggagtcaatgtcactagcctattgaacacacagagtct
ttggccatgaggtcgagactacagaagactgttttcttgtctgacttctg
tcctggggacgacctaacctcacatgtgtacaagtcccaggtgtgctgac
gagttaggccttatttgaaggggttaaagggtcatgtctactccacatca
ggacttcaggctcccatgcttctaaaatgtcacctctcctcgctgctcca
atctgcccccaccttgtctgccccttagccctgggtcctgcagtgaaaag
ggggtgtggcttctcttccactcctttctcccctcttttcctcctacctt
gttttgaagcagtctctgatagtttcatcatatatgcatataatgaattt
agtccctgtcccctccctttttttttttttttgcttttccaagcagggtt
cttctgtgtagccctggctgtcctggtattcaccctgtagaccaggctgc
cctggaactaacagagatccacctgcctctgccctctgagtgctgggagt
aaaggcgtgcactaccacacactcccctccccctgccccacccccacccg
tgaaacctttcttcccaataagtcctcctccgctttgcacggcttcattc
tgtgtttaattaagattccttgagcaaacatgggtaggaagttatttact
ggagcaagggcagtttattcagttagctaacaccacttcctcttgcct
caggtcagccagatctagttgtgagatccaacctcagaacaacaccaaag
aaggaaagagaaagaaaacaaaaaagaaaaaaaaaagagaagaaatgaaa
ggacccattctgggttggtccacgatgtctgtttcattcactcttatact
ctgtgttgtataaatcaagttaataccactgctgctgccccagaggacct
ggattctaaaagtgcctcacaagtgcctgtaactccagtggatccaacat
cctctttcctcttgtggcaccaggcattcacatggtgcacagacatacat
gtaggtaaaacacccatacaacaaaaataataaataaagcctagtgtaaa
tgaaataaagagataaaataactaagtataaatacacacttagaaatcag
ctggggaggggggggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89166344_89167338
seq2: B6Ng01-268I02.b_50_1047 (reverse)

seq1  AGGCCAGAGGGAGTGGTG-TAGCT-ACTG-ATAAACTGCCCTTGCTCCAG  47
      |||| ||||| ||||||| ||||| |||| ||||||||||||||||||||
seq2  AGGCAAGAGGAAGTGGTGTTAGCTAACTGAATAAACTGCCCTTGCTCCAG  50

seq1  TAAATAACTTCCTACCCATGTTTGCTCAAGGAATTCTAATTAAACACAGA  97
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TAAATAACTTCCTACCCATGTTTGCTCAAGGAATCTTAATTAAACACAGA  100

seq1  ATGAAGCCGTGCAAAGCGGAGGAGGACTTATTGGGAAGAAAGGTTTCACG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCCGTGCAAAGCGGAGGAGGACTTATTGGGAAGAAAGGTTTCACG  150

seq1  GGTGGGGGTGGGGCAGGGGGAGGGGAGTGTGTGGTAGTGCACGCCTTTAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTGGGGCAGGGGGAGGGGAGTGTGTGGTAGTGCACGCCTTTAC  200

seq1  TCCCAGCACTCAGAGGGCAGAGGCAGGTGGATCTCTGTTAGTTCCAGGGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTCAGAGGGCAGAGGCAGGTGGATCTCTGTTAGTTCCAGGGC  250

seq1  AGCCTGGTCTACAGGGTGAATACCAGGACAGCCAGGGCTACACAGAAGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAGGGTGAATACCAGGACAGCCAGGGCTACACAGAAGAA  300

seq1  CCCTGCTTGGAAAAGCAAAAAAAAAAAAAAAGGGAGGGGACAGGGACTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTGGAAAAGCAAAAAAAAAAAAAAAGGGAGGGGACAGGGACTAA  350

seq1  ATTCATTATATGCATATATGATGAAACTATCAGAGACTGCTTCAAAACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTATATGCATATATGATGAAACTATCAGAGACTGCTTCAAAACAA  400

seq1  GGTAGGAGGAAAAGAGGGGAGAAAGGAGTGGAAGAGAAGCCACACCCCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGGAAAAGAGGGGAGAAAGGAGTGGAAGAGAAGCCACACCCCCT  450

seq1  TTTCACTGCAGGACCCAGGGCTAAGGGGCAGACAAGGTGGGGGCAGATTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGCAGGACCCAGGGCTAAGGGGCAGACAAGGTGGGGGCAGATTG  500

seq1  GAGCAGCGAGGAGAGGTGACATTTTAGAAGCATGGGAGCCTGAAGTCCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCGAGGAGAGGTGACATTTTAGAAGCATGGGAGCCTGAAGTCCTG  550

seq1  ATGTGGAGTAGACATGACCCTTTAACCCCTTCAAATAAGGCCTAACTCGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGTAGACATGACCCTTTAACCCCTTCAAATAAGGCCTAACTCGT  600

seq1  CAGCACACCTGGGACTTGTACACATGTGAGGTTAGGTCGTCCCCAGGACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACCTGGGACTTGTACACATGTGAGGTTAGGTCGTCCCCAGGACA  650

seq1  GAAGTCAGACAAGAAAACAGTCTTCTGTAGTCTCGACCTCATGGCCAAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGACAAGAAAACAGTCTTCTGTAGTCTCGACCTCATGGCCAAAG  700

seq1  ACTCTGTGTGTTCAATAGGCTAGTGACATTGACTCCATGCCCCTGGGTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGTGTTCAATAGGCTAGTGACATTGACTCCATGCCCCTGGGTTC  750

seq1  GGACAGATTTAGGGAAGGTATCAGTTACTGTAAAGAGAGGTGTGAAATGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGATTTAGGGAAGGTATCAGTTACTGTAAAGAGAGGTGTGAAATGC  800

seq1  CTCCTAGAAAGTTTTCCTGGTTTCTGAACAGGGGCAGGAGAGACATGTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGAAAGTTTTCCTGGTTTCTGAACAGGGGCAGGAGAGACATGTTT  850

seq1  CTTCTCTGGTCTTTGAGAATAATGCACAGAGATGTGCTAGGTGGAGTTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGGTCTTTGAGAATAATGCACAGAGATGTGCTAGGTGGAGTTGT  900

seq1  GGTAGGTATTTTGTAACCTAAAAACCTCTAGCCAGGGCCATTCCTTGGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTATTTTGTAACCTAAAAACCTCTAGCCAGGGCCATTCCTTGGCA  950

seq1  ACCCAGACTGACATGGAACATACTGTGTAGGCAGGAAATCTTGAATTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGACTGACATGGAACATACTGTGTAGGCAGGAAATCTTGAATTC  998

seq1: chr3_89002445_89002868
seq2: B6Ng01-268I02.g_63_486

seq1  GAATTCCAGGTCAGCCAGATCTAGTTGTGAGATCCAACCTCAGAACAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGCCAGATCTAGTTGTGAGATCCAACCTCAGAACAACA  50

seq1  CCAAAGAAGGAAAGAGAAAGAAAACAAAAAAGAAAAAAAAAAGAGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAGGAAAGAGAAAGAAAACAAAAAAGAAAAAAAAAAGAGAAGAA  100

seq1  ATGAAAGGACCCATTCTGGGTTGGTCCACGATGTCTGTTTCATTCACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGACCCATTCTGGGTTGGTCCACGATGTCTGTTTCATTCACTCT  150

seq1  TATACTCTGTGTTGTATAAATCAAGTTAATACCACTGCTGCTGCCCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCTGTGTTGTATAAATCAAGTTAATACCACTGCTGCTGCCCCAGA  200

seq1  GGACCTGGATTCTAAAAGTGCCTCACAAGTGCCTGTAACTCCAGTGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGATTCTAAAAGTGCCTCACAAGTGCCTGTAACTCCAGTGGATC  250

seq1  CAACATCCTCTTTCCTCTTGTGGCACCAGGCATTCACATGGTGCACAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCCTCTTTCCTCTTGTGGCACCAGGCATTCACATGGTGCACAGAC  300

seq1  ATACATGTAGGTAAAACACCCATACAACAAAAATAATAAATAAAGCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTAGGTAAAACACCCATACAACAAAAATAATAAATAAAGCCTAG  350

seq1  TGTAAATGAAATAAAGAGATAAAATAACTAAGTATAAATACACACTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGAAATAAAGAGATAAAATAACTAAGTATAAATACACACTTAGA  400

seq1  AATCAGCTGGGGAGGGGGGGGTGT  424
      ||||||||||||||||||||||||
seq2  AATCAGCTGGGGAGGGGGGGGTGT  424