BAC Information

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BAC

Clone NameB6Ng01-270D24
Chromosome3 (Build37)
Map Location 92,487,512 - 92,625,857
singlet/doubletdoublet
Overlap geneLce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c
Downstream geneKprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270D24.bB6Ng01-270D24.g
ACCGA072638GA072639
length1,1621,095
definitionB6Ng01-270D24.b B6Ng01-270D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,624,689 - 92,625,857)(92,487,512 - 92,488,266)
sequence
gaattcatcaattgctttcaaatcctattatgcagggtaccttcaaagat
tgaaccctaggggcacagaatcagaggggcagaagagaaaaaagtttttt
tctcttccacgtggacctggaggatgatcatattgggggacagcctcttc
cctagtgtgagatggtacctgaaggtgacagttatttgtagagggtaaga
aggttcctctaaggaggatgacaaaagggggttggctcttgaaatgtctg
ttccaatgctctatcctcacaaagcacacctcaaatgacttcaaaacaac
aaggccaaaggagagagcatagagtcaaatattgtctctaaatatgctgt
tcccttgctctggggacctaagtcttcaatgtcaattttggagatctaga
gactacacatcaaaaccatgtgcgatttaaaggaaaacagagacatttct
gtgaggtccattcttcatgttctatagacaaacagtcatttttatctgcc
agaaaggcactggtaaagggatataaatcctgaatattatcactattcaa
tttaactaatggttcttggtggtaccgggagcagaaattgcattgttgtt
taaagtaaggaaacaaataagcacctacccatagtgacaggtcagagaaa
tgattgcatttatgtctagcttagtgaatcattgatcatcagttagggtc
acttatagaagaatgagtaaggggttgtatacagaagcaggaggagttta
tgagtacctgaacagctcaagaatatgtcttttccaacaaccattaacca
attgtatctattcaggaaggagccagctctcctcttttgatgacagatat
taatgggtccaatcaaaaaggcaatggccatgtcaatcctggaggacaga
attctataaccctctaccctttgctccggttcttaaatcatttcagcccc
ttttctatgatgtgccctgaggctttctgagatgatttatatatcccttt
tagaggtgtaccttcaacactatcattcctctctatccaggcaagctcat
ctgggcactcagtttcagttgcatgtcttatgctagagcaaaggggcatg
catggcctcagtagatcctggcaatgtgctacttccaggcacctgtgatg
ccattctgcagt
gaattcagagacctgcctatctctcttatacatagatgatagctgggtgg
gaccctgtcctgaaattcgcatttctaccacacaggggccacaccttgct
gtgtctcagactgagcttgaactcaggaatctgcctgtctttgtatctgc
ctggttttttaaatctttctcacaagcttgctcattaatgcagccacctt
tgttgctttagatttatgaagcccttcatataattcatatttcatcttta
ttttttacatagtgtccctaatttcctggattttttttgttgttgttgtt
agacactttttagatttggcattttctctcactgacataacaatttcttc
tatggcatcttctatgcctgagattctatcttccacttcttgtgttttgc
tggtgatgtttgctgctatagttcctcttctctttcctaggttttctatc
tcctgggttgcctccttttatgttatctctattacttttatttccatttt
caagtctcaaacagtcttattcatttcctttgctcatttgattgtatttt
actgtatttctttatatttactcatttgctcttgaaaagcctctatctgt
ttgattgtagtttcctgtttttcaatggatttattttttttttctttaaa
ggtctctatcaatcatctttgtagcatgagatttaaggtcattattttgc
tcttcaagcatgttaggatatccagagcttgctgtggtaggagagctggg
ttctgatgaggccatattgccctgacttttgtgaatatgttttttttcct
ggcttttagccatctggttatctctggtattggctggtctggtagtaggt
gatcatagcaggactgtaatactgccagtaaagctgatattcctaatggc
tacaggcctctggttttcttgggtgtcagaaggcctccagggaagcagcc
acattgattgactgatatcccagtgactgcagctttcctggagggcagct
catctgtgcttgggtagtgatatgagatcaagaatggcagtagaaggtgg
tggacgaaatggagagcagaatggacggtcagacctctctgctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92624689_92625857
seq2: B6Ng01-270D24.b_42_1203 (reverse)

seq1  ACTGCAGAAT-GCATTACA-GTGCCTGAAAGTAGCACATGTGGCAAGGGA  48
      |||||||||| |||| ||| ||||||| ||||||||||| || ||  |||
seq2  ACTGCAGAATGGCATCACAGGTGCCTGGAAGTAGCACAT-TGCCA--GGA  47

seq1  TCTTACTGAGG-CATGCATGCCCC-TTGCTCTAAGCAATAAGACATGCAA  96
      || |||||||| |||||||||||| ||||||| ||| |||||||||||||
seq2  TC-TACTGAGGCCATGCATGCCCCTTTGCTCT-AGC-ATAAGACATGCAA  94

seq1  CTGAAACTGAGTTGCCCCAGAAGGAGCTTGCCTGGATAAGAGAGGAATGA  146
      ||||||||||||   ||||| | |||||||||||||| ||||||||||||
seq2  CTGAAACTGAGT--GCCCAG-ATGAGCTTGCCTGGAT-AGAGAGGAATGA  140

seq1  TAGTGTTGAAGGTACACCTCTAAAAGGGATATATAAATCATTCTCAGAAA  196
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGTGTTGAAGGTACACCTCTAAAAGGGATATATAAATCA-TCTCAGAAA  189

seq1  GCCTCAGGGCACATCATAGAAAAGGGGCTGAAATGATTTAAGAACCGGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGGGCACATCATAGAAAAGGGGCTGAAATGATTTAAGAACCGGAG  239

seq1  CAAAGGGTAGAGGGTTATAGAATTCTGTCCTCCAGGATTGACATGGCCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGTAGAGGGTTATAGAATTCTGTCCTCCAGGATTGACATGGCCAT  289

seq1  TGCCTTTTTGATTGGACCCATTAATATCTGTCATCAAAAGAGGAGAGCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTTGATTGGACCCATTAATATCTGTCATCAAAAGAGGAGAGCTG  339

seq1  GCTCCTTCCTGAATAGATACAATTGGTTAATGGTTGTTGGAAAAGACATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTCCTGAATAGATACAATTGGTTAATGGTTGTTGGAAAAGACATA  389

seq1  TTCTTGAGCTGTTCAGGTACTCATAAACTCCTCCTGCTTCTGTATACAAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGCTGTTCAGGTACTCATAAACTCCTCCTGCTTCTGTATACAAC  439

seq1  CCCTTACTCATTCTTCTATAAGTGACCCTAACTGATGATCAATGATTCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACTCATTCTTCTATAAGTGACCCTAACTGATGATCAATGATTCAC  489

seq1  TAAGCTAGACATAAATGCAATCATTTCTCTGACCTGTCACTATGGGTAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAGACATAAATGCAATCATTTCTCTGACCTGTCACTATGGGTAGG  539

seq1  TGCTTATTTGTTTCCTTACTTTAAACAACAATGCAATTTCTGCTCCCGGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTTGTTTCCTTACTTTAAACAACAATGCAATTTCTGCTCCCGGT  589

seq1  ACCACCAAGAACCATTAGTTAAATTGAATAGTGATAATATTCAGGATTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAAGAACCATTAGTTAAATTGAATAGTGATAATATTCAGGATTTA  639

seq1  TATCCCTTTACCAGTGCCTTTCTGGCAGATAAAAATGACTGTTTGTCTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTTTACCAGTGCCTTTCTGGCAGATAAAAATGACTGTTTGTCTAT  689

seq1  AGAACATGAAGAATGGACCTCACAGAAATGTCTCTGTTTTCCTTTAAATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGAAGAATGGACCTCACAGAAATGTCTCTGTTTTCCTTTAAATC  739

seq1  GCACATGGTTTTGATGTGTAGTCTCTAGATCTCCAAAATTGACATTGAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGTTTTGATGTGTAGTCTCTAGATCTCCAAAATTGACATTGAAG  789

seq1  ACTTAGGTCCCCAGAGCAAGGGAACAGCATATTTAGAGACAATATTTGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTCCCCAGAGCAAGGGAACAGCATATTTAGAGACAATATTTGAC  839

seq1  TCTATGCTCTCTCCTTTGGCCTTGTTGTTTTGAAGTCATTTGAGGTGTGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTCTCTCCTTTGGCCTTGTTGTTTTGAAGTCATTTGAGGTGTGC  889

seq1  TTTGTGAGGATAGAGCATTGGAACAGACATTTCAAGAGCCAACCCCCTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGGATAGAGCATTGGAACAGACATTTCAAGAGCCAACCCCCTTT  939

seq1  TGTCATCCTCCTTAGAGGAACCTTCTTACCCTCTACAAATAACTGTCACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCCTCCTTAGAGGAACCTTCTTACCCTCTACAAATAACTGTCACC  989

seq1  TTCAGGTACCATCTCACACTAGGGAAGAGGCTGTCCCCCAATATGATCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTACCATCTCACACTAGGGAAGAGGCTGTCCCCCAATATGATCAT  1039

seq1  CCTCCAGGTCCACGTGGAAGAGAAAAAAACTTTTTTCTCTTCTGCCCCTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGTCCACGTGGAAGAGAAAAAAACTTTTTTCTCTTCTGCCCCTC  1089

seq1  TGATTCTGTGCCCCTAGGGTTCAATCTTTGAAGGTACCCTGCATAATAGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGTGCCCCTAGGGTTCAATCTTTGAAGGTACCCTGCATAATAGG  1139

seq1  ATTTGAAAGCAATTGATGAATTC  1169
      |||||||||||||||||||||||
seq2  ATTTGAAAGCAATTGATGAATTC  1162

seq1: chr3_92487512_92488266
seq2: B6Ng01-270D24.g_420_1160

seq1  GCATCTTCTATGCCTGAGATTCTATCTTCCACTTCTTGTGTTTTGCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTCTATGCCTGAGATTCTATCTTCCACTTCTTGTGTTTTGCTGGT  50

seq1  GATGTTTGCTGCTATAGTTCCTCTTCTCTTTCCTAGGTTTTCTATCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTGCTGCTATAGTTCCTCTTCTCTTTCCTAGGTTTTCTATCTCCT  100

seq1  GGGTTGCCTCCTTTTATGTTATCTCTATTACTTTTATTTCCATTTTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCCTCCTTTTATGTTATCTCTATTACTTTTATTTCCATTTTCAAG  150

seq1  TCTCAAACAGTCTTATTCATTTCCTTTGCTCATTTGATTGTATTTTACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACAGTCTTATTCATTTCCTTTGCTCATTTGATTGTATTTTACTG  200

seq1  TATTTCTTTATATTTACTCATTTGCTCTTGAAAAGCCTCTATCTGTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTATATTTACTCATTTGCTCTTGAAAAGCCTCTATCTGTTTGA  250

seq1  TTGTAGTTTCCTGTTTTTCAATGGATTTATTTTTTTTTTCTTTAAAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTTCCTGTTTTTCAATGGATTTATTTTTTTTTTCTTTAAAGGTC  300

seq1  TCTATCAATCATCTTTGTAGCATGAGATTTAAGGTCATTATTTTGCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAATCATCTTTGTAGCATGAGATTTAAGGTCATTATTTTGCTCTT  350

seq1  CAAGCATGTTAGGATATCCAGAGCTTGCTGTGGTAGGAGAGCTGGGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGTTAGGATATCCAGAGCTTGCTGTGGTAGGAGAGCTGGGTTCT  400

seq1  GATGAGGCCATATTGCCCTGACTTTTGTGAATATG-TTTTTTTCCTGGCT  449
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATGAGGCCATATTGCCCTGACTTTTGTGAATATGTTTTTTTTCCTGGCT  450

seq1  TTTAGCCATCTGGTTATCTCTGGTATTGGCTGGTCTGGTAGTAGGTGATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCATCTGGTTATCTCTGGTATTGGCTGGTCTGGTAGTAGGTGATC  500

seq1  ATAGCAGGACTGTAATACTGCCAGTAAAGCTGATATTCCCTAATGGCTAC  549
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATAGCAGGACTGTAATACTGCCAGTAAAGCTGATATT-CCTAATGGCTAC  549

seq1  AGGCCTCTGGTTTTCTTGGGTGTCAGAAGGCCTCCAGGGAAGCAGGCCAC  599
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGCCTCTGGTTTTCTTGGGTGTCAGAAGGCCTCCAGGGAAGCA-GCCAC  598

seq1  ATTGATTGACCTGGTTATCCCAGTTGACTGCAGGCTTTCCTGGGAGGGGC  649
      ||||||||||   | |||||||| |||||||| ||||||||||   ||||
seq2  ATTGATTGAC--TGATATCCCAG-TGACTGCA-GCTTTCCTGG--AGGGC  642

seq1  AGGCTCATCTGTGGCTTGGGTAGTGATATGAAGATCCAGGATTGCAGTTA  699
      | |||||||||| ||||||||||||||||| ||||| || || |||||  
seq2  A-GCTCATCTGT-GCTTGGGTAGTGATATG-AGATCAAGAATGGCAGTAG  689

seq1  GAGGT-GTGGACCGAAAATTGGAGAGCAGAAGGGGACAGGGCAGACCTCT  748
       |||| ||||| |||||  ||||||||||||  |||| || |||||||||
seq2  AAGGTGGTGGA-CGAAA--TGGAGAGCAGAA-TGGAC-GGTCAGACCTCT  734

seq1  CTGCTGG  755
      |||||||
seq2  CTGCTGG  741