BAC Information

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BAC

Clone NameB6Ng01-270G12
Chromosome3 (Build37)
Map Location 27,052,298 - 27,053,185
singlet/doubletsinglet
Overlap geneEct2
Upstream geneNlgn1, LOC229152, Spata16, LOC665258
Downstream geneAadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270G12.bB6Ng01-270G12.g
ACCGA072753GA072754
length1,177908
definitionB6Ng01-270G12.b B6Ng01-270G12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgggccttaccccctgaccaaggaaagtagagaattcaaatgg
atatcagaacatcagagagcctttgaaaatattaaggaggccctgttgac
ttcgccagccttggcattgccagatctaaccaaacccttcatcctctatg
ttgatgagagggcggggttggccagaggagttcttactcaggctctaagg
ccgtggaagaggcccatggcatatttttctaagaagctggacccagtggc
cagcggatggcccacatgtttaaaggccattgctgcagtagccttactca
gtaaggatgccaacaaattaactttgggacagcaaataactgtggtagcc
ccccactctcttgaaagcattatctgccagcccccagattgatagatgac
aaatgcccagatgacccattaccagagtctgttgctgactaaacgggtcg
tgtttgctcctcctgctatcctcaatcctgctaccctcctgcctgaaacg
gacgattcctcgcccgttcactgctgtgtggacatccttgaagaagaaac
caggatccaaagtgatctatgagaccagccgtggccaagcattccaaact
ggtacacagatggaagcagcttcctagtagaagtttttatagataccttt
tcgggataggtggaggcctacccaacgaaaaaagaaactgccaatgttgt
gttaagaagatcctagaagaaatttttccatggttcagaatacctaaggt
aataggctcttacacaggacctgcctttgttgcccaggtaagtcaggact
ggacatccaactggggattgagtagaaattacattgtggtcaatggcctt
tctctacacaaagaataaacaggctgagaaagaaattagggaaacaacac
ccttctcaatagtcaataggtatgactctaactaaggaagtgaaagatct
gtatgatagaacttcaagtctctgaagaaattaagaagatctcagatgat
ggaaagatctcccatgctcatggagtgcagatcacattgtaaaaatgcct
atatgcaaaagcatctacagattcaatgcatccccatcaaatcactcgtc
tcatgaatagaacgccatcttgccaatcatctgataacagaacctaggat
agcaaaactcttcctcagataaaagaa
gaattccagagggaaaccacaaaacaatcaaggcagctcggggctgcggc
gggcgggcgggaggccaaaatcccggtcccaactgcgcccttcaccctga
ggcgccggacagaagcagaatagatagagagcccagcctcccgcaaggaa
gggccgggacgagagcagagggcaggacaggaggcggatgtggggaagga
ggatggaggggagcgggacagacaggtacgcagccgtgggagctcaccgc
ggcgggggcgccggccttggtcgccacggcccgtgctcagttccgggttc
ccgaatcccttcccgtcccccactcaccccgcagtcctcaccacgctcag
agattttaaaaaggaaccacgacggcgcagtcctcgcttatccttctcaa
acactaagtctccccctcacaggcgccgccatggctcgagagaggctgcc
gcctccgattcaaaaaaatccagtcgctctctctaagagccatgctgatt
ggcgcgctctgtcaacctccttttgataggctggaacctcgggcggactg
ccgattggtcaatcccaacgtctgccttcgggaggcgccggctgattggt
tgtgagtgtgtttcaaatccggtaaacggctggagcgtgcgaacgtcggc
ggagtgcccggatgtgggcttgaggaggcgtggctctgcagcgcctctgg
atgcagcagtgtttctgtggttaccgcttgtttactccgtaaacagccca
gttcctgatgaacggtctctctgccatcacctccacttcaagaaaaagta
cctagctccgcaaaccgatccgctctttactactaaccagattgttattt
tttgaagacaagctttgcatctgagtaaattaatataaaaacgtgcttag
tgaggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_27052298_27053185
seq2: B6Ng01-270G12.g_63_953

seq1  GAATTCCAGAGGGAAACCACAAAACAATCAAGGCAGCTCGGGGCTGCGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGGGAAACCACAAAACAATCAAGGCAGCTCGGGGCTGCGGC  50

seq1  GGGCGGGCGGGAGGCCAAAATCCCGGTCCCAACTGCGCCCTTCACCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGGCGGGAGGCCAAAATCCCGGTCCCAACTGCGCCCTTCACCCTGA  100

seq1  GGCGCCGGACAGAAGCAGAATAGATAGAGAGCCCAGCCTCCCGCAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCGGACAGAAGCAGAATAGATAGAGAGCCCAGCCTCCCGCAAGGAA  150

seq1  GGGCCGGGACGAGAGCAGAGGGCAGGACAGGAGGCGGATGTGGGGAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGGGACGAGAGCAGAGGGCAGGACAGGAGGCGGATGTGGGGAAGGA  200

seq1  GGATGGAGGGGAGCGGGACAGACAGGTACGCAGCCGTGGGAGCTCACCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAGGGGAGCGGGACAGACAGGTACGCAGCCGTGGGAGCTCACCGC  250

seq1  GGCGGGGGCGCCGGCCTTGGTCGCCACGGCCCGTGCTCAGTTCCGGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGGGCGCCGGCCTTGGTCGCCACGGCCCGTGCTCAGTTCCGGGTTC  300

seq1  CCGAATCCCTTCCCGTCCCCCACTCACCCCGCAGTCCTCACCACGCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATCCCTTCCCGTCCCCCACTCACCCCGCAGTCCTCACCACGCTCAG  350

seq1  AGATTTTAAAAAGGAACCACGACGGCGCAGTCCTCGCTTATCCTTCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAAAAAGGAACCACGACGGCGCAGTCCTCGCTTATCCTTCTCAA  400

seq1  ACACTAAGTCTCCCCCTCACAGGCGCCGCCATGGCTCGAGAGAGGCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAGTCTCCCCCTCACAGGCGCCGCCATGGCTCGAGAGAGGCTGCC  450

seq1  GCCTCCGATTCAAAAAAATCCAGTCGCTCTCTCTAAGAGCCATGCTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCGATTCAAAAAAATCCAGTCGCTCTCTCTAAGAGCCATGCTGATT  500

seq1  GGCGCGCTCTGTCAACCTCCTTTTGATAGGCTGGAACCTCGGGCGGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCGCTCTGTCAACCTCCTTTTGATAGGCTGGAACCTCGGGCGGACTG  550

seq1  CCGATTGGTCAATCCCAACGTCTGCCTTCGGGAGGCGCCGGCTGATTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATTGGTCAATCCCAACGTCTGCCTTCGGGAGGCGCCGGCTGATTGGT  600

seq1  TGTGAGTGTGTTTCAAATCCGGTAAACGGCTGGAGCGTGCGAACGTCGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGTGTTTCAAATCCGGTAAACGGCTGGAGCGTGCGAACGTCGGC  650

seq1  GGAGTGCCCGGATGTGGGCTTGAGGAGGCGTGGCTCTGCAGCGCCTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCCCGGATGTGGGCTTGAGGAGGCGTGGCTCTGCAGCGCCTCTGG  700

seq1  ATGCAGCAGGTGTTTCTGTGGTTACCGCTTGTTTACTCCGTAAACAGCCC  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCA-GTGTTTCTGTGGTTACCGCTTGTTTACTCCGTAAACAGCCC  749

seq1  AGTTCCTGATGAACGGTCTCTCTGCCATCACCTCCAACTTCAAGAAAAAG  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTTCCTGATGAACGGTCTCTCTGCCATCACCTCC-ACTTCAAGAAAAAG  798

seq1  TACCAAGCACCGCAAACCGATCCGCTC-TTACTACTAACCAGATT-TTA-  847
      |||| ||| |||||||||||||||||| ||||||||||||||||| ||| 
seq2  TACCTAGCTCCGCAAACCGATCCGCTCTTTACTACTAACCAGATTGTTAT  848

seq1  TTTTTGAAGACAAGC-TTGCATCTGAGT-AATTAATATAAAAA  888
      ||||||||||||||| |||||||||||| ||||||||||||||
seq2  TTTTTGAAGACAAGCTTTGCATCTGAGTAAATTAATATAAAAA  891