BAC Information

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BAC

Clone NameB6Ng01-270G24
Chromosome3 (Build37)
Map Location 118,221,671 - 118,362,843
singlet/doubletdoublet
Overlap geneDpyd
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneLOC100043275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270G24.bB6Ng01-270G24.g
ACCGA072775GA072776
length1,1891,055
definitionB6Ng01-270G24.b B6Ng01-270G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,361,650 - 118,362,843)(118,221,671 - 118,222,741)
sequence
gaattcttggtgctagatagataatcaaacaaacaaaagcataaaagccc
ccaaaatagtaaggctcatcattatctttaaaggcacatgaatttttcgg
atgtggaaaaaaagattaatagaaccattgaagttcttacattaagttaa
aattcagaaaagcattcatttttaagtcataaaagcgaaagtcttctaat
attcctttggattgggagatataaaggcttttgcttgacagctacatgag
ttgatatcaaaaagagaatttggcaggggtttctgaatccataacaattg
tctattagtctgtttttaataatttttctttggcatgtaatcctctttaa
ttagattccactctctgttgtttcaagattccataaactggtgtcttata
taccagctgctgaagcaggagttactgtctaaacgatattcacaatgagt
atttaggaggtttacaattatacccttgctaataaattgtgccatttcca
caacaattttaagtgctaatcttcagaaggcattttaaaattagctaaaa
ttctgtcaagagatttacaaaaattgttagcatgaagataattatgtcac
agcccttggactccatctctgattgtgtgcataaatcagaaaatgtcagc
tgtgttttcccttaataactgcccctgcagcaatatattatagtctaaac
tcatattatcatttttgtttctcttctctaaatactagacagttgcttca
aaagtttggaactgattaaataattcatatttcccagaatagtaactgat
tatcagttacaaaattgtaagtatcagcattaagtgcattaatatggaag
ggataaacaaatttcccatgaactctatattaaagagcaaaacatgtcaa
tgcaaactgtttttaaaatatttattagataaaaacccaactgtacccag
ttgtacacaaaccaaagtaaaacttcaaataaaactaaaaatatacagat
tttttatttcaagaacaaaaacacagaagcaaagttttctgaagcattta
ccaaacatcttagttattagtatacgacctatctgagaattagtgagatc
tcatctttgaagaaaattaaaaaaaaaaactactattcccttcttttaac
ctatatggataaatgacatttttctctgtcgaacaaaat

gaattcataatacaattgttttcaaacaggacttggcaatttatagctca
tggaacaaatcttcgacatcagttatttaaatactgcagaatctggggaa
cacagactcattttttttgtatgtcatgtaaacgatttaacattgcacag
aagtggtaaagttgaataatcaaagactctattgcctgaagaacctaaaa
acacaccagctttcctcttgtgggggaaacttttgtgaactcttgctttg
agtctaagaggtaggataatttgttggacagcaataaattacccagacat
ttgcccaaagggaacatgcctcatttcttattaaaccaataaattgctat
gctcacagaaaactacatatgcatttgcagagccaataaccttttcagtg
gataaagctttttgttctgcttgcatttctaaagtacatttatgcagacg
gctagttttacaccagtatttcctccttattcaccatagtcatgtgagca
tggcattgctctttcagaactgtttcccaaaccccacattttatgttacc
ccatgtttgcattttcctctctgaagtaaaaagggaggagatgcaggaat
tttggggcttctctttccctttccccctcttccaactgactggaacctgt
agtcacttgattcactatctcgagtagtcaaatatgctggagaagtaggg
taaaaatgctatccaaataatttaagtcatctttttctctttctagaact
ccatggaacccgagttcccacaactcagatactcatattgttcaccagat
tagagagaagtaaagatgaatcttctcatatttaccaaatgattattgga
tatcacgttctagcagctagccatattctaagtaaggtaacagtcttatg
cataaagttttggcccccaaaatatttagttaataaaacattggattgtt
ggctccaactctaagtgactttgataaactttgtccatttgttagtggca
gagcaacatttacagtacatgcttttctcttctagataaatatacactcc
agata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118361650_118362843
seq2: B6Ng01-270G24.b_42_1230 (reverse)

seq1  ATTTTGTCTGACCAGAG-AAAATGTCATTTATCATTATTGGGGTAAAAGG  49
      |||||||  || ||||| |||||||||||||||  || | || |||||| 
seq2  ATTTTGTTCGA-CAGAGAAAAATGTCATTTATCCATA-TAGGTTAAAAGA  48

seq1  AGGGAATAGTAGTTTTTTTTTTTTTAATTTCTTCCAAGATGAGATCTCAC  99
      |||||||||||| ||||||||||| | ||||||| |||||||||||||||
seq2  AGGGAATAGTAG-TTTTTTTTTTTAATTTTCTTCAAAGATGAGATCTCAC  97

seq1  TTAATCTCCAGATAGGGTCGTATACCTTAATAACTAAGATGTTTGGTAAA  149
      | | ||| |||||| ||||||||||  |||||||||||||||||||||||
seq2  TAATTCT-CAGATA-GGTCGTATAC--TAATAACTAAGATGTTTGGTAAA  143

seq1  TGCTTCAGAAAACTTTGCTTCTGTGTTTTTGTTCTTGAAAT-AAAAATCT  198
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCTTCAGAAAACTTTGCTTCTGTGTTTTTGTTCTTGAAATAAAAAATCT  193

seq1  GTATATTTTTAGTTTTATTTGAAGTTTTACTTTGGTTTGTGTACAACTGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTTTAGTTTTATTTGAAGTTTTACTTTGGTTTGTGTACAACTGG  243

seq1  GTACAGTTGGGTTTTTATCTAATAAATATTTTAAAAACAGTTTGCATTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTTGGGTTTTTATCTAATAAATATTTTAAAAACAGTTTGCATTGA  293

seq1  CATGTTTTGCTCTTTAATATAGAGTTCATGGGAAATTTGTTTATCCCTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTGCTCTTTAATATAGAGTTCATGGGAAATTTGTTTATCCCTTC  343

seq1  CATATTAATGCACTTAATGCTGATACTTACAATTTTGTAACTGATAATCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAATGCACTTAATGCTGATACTTACAATTTTGTAACTGATAATCA  393

seq1  GTTACTATTCTGGGAAATATGAATTATTTAATCAGTTCCAAACTTTTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATTCTGGGAAATATGAATTATTTAATCAGTTCCAAACTTTTGAA  443

seq1  GCAACTGTCTAGTATTTAGAGAAGAGAAACAAAAATGATAATATGAGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGTCTAGTATTTAGAGAAGAGAAACAAAAATGATAATATGAGTTT  493

seq1  AGACTATAATATATTGCTGCAGGGGCAGTTATTAAGGGAAAACACAGCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATAATATATTGCTGCAGGGGCAGTTATTAAGGGAAAACACAGCTG  543

seq1  ACATTTTCTGATTTATGCACACAATCAGAGATGGAGTCCAAGGGCTGTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTGATTTATGCACACAATCAGAGATGGAGTCCAAGGGCTGTGA  593

seq1  CATAATTATCTTCATGCTAACAATTTTTGTAAATCTCTTGACAGAATTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTATCTTCATGCTAACAATTTTTGTAAATCTCTTGACAGAATTTT  643

seq1  AGCTAATTTTAAAATGCCTTCTGAAGATTAGCACTTAAAATTGTTGTGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATTTTAAAATGCCTTCTGAAGATTAGCACTTAAAATTGTTGTGGA  693

seq1  AATGGCACAATTTATTAGCAAGGGTATAATTGTAAACCTCCTAAATACTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCACAATTTATTAGCAAGGGTATAATTGTAAACCTCCTAAATACTC  743

seq1  ATTGTGAATATCGTTTAGACAGTAACTCCTGCTTCAGCAGCTGGTATATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAATATCGTTTAGACAGTAACTCCTGCTTCAGCAGCTGGTATATA  793

seq1  AGACACCAGTTTATGGAATCTTGAAACAACAGAGAGTGGAATCTAATTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCAGTTTATGGAATCTTGAAACAACAGAGAGTGGAATCTAATTAA  843

seq1  AGAGGATTACATGCCAAAGAAAAATTATTAAAAACAGACTAATAGACAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATTACATGCCAAAGAAAAATTATTAAAAACAGACTAATAGACAAT  893

seq1  TGTTATGGATTCAGAAACCCCTGCCAAATTCTCTTTTTGATATCAACTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGATTCAGAAACCCCTGCCAAATTCTCTTTTTGATATCAACTCA  943

seq1  TGTAGCTGTCAAGCAAAAGCCTTTATATCTCCCAATCCAAAGGAATATTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGTCAAGCAAAAGCCTTTATATCTCCCAATCCAAAGGAATATTA  993

seq1  GAAGACTTTCGCTTTTATGACTTAAAAATGAATGCTTTTCTGAATTTTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTTCGCTTTTATGACTTAAAAATGAATGCTTTTCTGAATTTTAA  1043

seq1  CTTAATGTAAGAACTTCAATGGTTCTATTAATCTTTTTTTCCACATCCGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTAAGAACTTCAATGGTTCTATTAATCTTTTTTTCCACATCCGA  1093

seq1  AAAATTCATGTGCCTTTAAAGATAATGATGAGCCTTACTATTTTGGGGGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCATGTGCCTTTAAAGATAATGATGAGCCTTACTATTTTGGGGGC  1143

seq1  TTTTATGCTTTTGTTTGTTTGATTATCTATCTAGCACCAAGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCTTTTGTTTGTTTGATTATCTATCTAGCACCAAGAATTC  1189


seq1: chr3_118221671_118222741
seq2: B6Ng01-270G24.g_63_1117

seq1  GAATTCATAATACAATTGTTTTCAAACAGGACTTGGCAATTTATAGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATACAATTGTTTTCAAACAGGACTTGGCAATTTATAGCTCA  50

seq1  TGGAACAAATCTTCGACATCAGTTATTTAAATACTGCAGAATCTGGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAAATCTTCGACATCAGTTATTTAAATACTGCAGAATCTGGGGAA  100

seq1  CACAGACTCATTTTTTTTGTATGTCATGTAAACGATTTAACATTGCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTCATTTTTTTTGTATGTCATGTAAACGATTTAACATTGCACAG  150

seq1  AAGTGGTAAAGTTGAATAATCAAAGACTCTATTGCCTGAAGAACCTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTAAAGTTGAATAATCAAAGACTCTATTGCCTGAAGAACCTAAAA  200

seq1  ACACACCAGCTTTCCTCTTGTGGGGGAAACTTTTGTGAACTCTTGCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAGCTTTCCTCTTGTGGGGGAAACTTTTGTGAACTCTTGCTTTG  250

seq1  AGTCTAAGAGGTAGGATAATTTGTTGGACAGCAATAAATTACCCAGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGAGGTAGGATAATTTGTTGGACAGCAATAAATTACCCAGACAT  300

seq1  TTGCCCAAAGGGAACATGCCTCATTTCTTATTAAACCAATAAATTGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAAAGGGAACATGCCTCATTTCTTATTAAACCAATAAATTGCTAT  350

seq1  GCTCACAGAAAACTACATATGCATTTGCAGAGCCAATAACCTTTTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGAAAACTACATATGCATTTGCAGAGCCAATAACCTTTTCAGTG  400

seq1  GATAAAGCTTTTTGTTCTGCTTGCATTTCTAAAGTACATTTATGCAGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGCTTTTTGTTCTGCTTGCATTTCTAAAGTACATTTATGCAGACG  450

seq1  GCTAGTTTTACACCAGTATTTCCTCCTTATTCACCATAGTCATGTGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTTACACCAGTATTTCCTCCTTATTCACCATAGTCATGTGAGCA  500

seq1  TGGCATTGCTCTTTCAGAACTGTTTCCCAAACCCCACATTTTATGTTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGCTCTTTCAGAACTGTTTCCCAAACCCCACATTTTATGTTACC  550

seq1  CCATGTTTGCATTTTCCTCTCTGAAGTAAAAAGGGAGGAGATGCAGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTGCATTTTCCTCTCTGAAGTAAAAAGGGAGGAGATGCAGGAAT  600

seq1  TTTGGGGCTTCTCTTTCCCTTTCCCCCTCTTCCAACTGACTGGAACCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGCTTCTCTTTCCCTTTCCCCCTCTTCCAACTGACTGGAACCTGT  650

seq1  AGTCACTTGATTCACTATCTCGAGTAGTCAAATATGCTGGAGAAGTAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTGATTCACTATCTCGAGTAGTCAAATATGCTGGAGAAGTAGGG  700

seq1  TAAAAATGCTATCCAAATAATTTAAGTCATCTTTTTCTCTTTCTAGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGCTATCCAAATAATTTAAGTCATCTTTTTCTCTTTCTAGAACT  750

seq1  CCATGGAACCCGAGTTCCCACAACTCAGATACTCATATTGTTCACCAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAACCCGAGTTCCCACAACTCAGATACTCATATTGTTCACCAGAT  800

seq1  TAGAGAGAAGTAAAGATGAATCTTCTCATATTTACCAAATGATTATTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAAGTAAAGATGAATCTTCTCATATTTACCAAATGATTATTGGA  850

seq1  TATCACGTTCTAGCAGGCTAGCCATATTCTAAGTAAGGTAACAGTCTTAT  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATCACGTTCTAGCA-GCTAGCCATATTCTAAGTAAGGTAACAGTCTTAT  899

seq1  GCATAAAGTTTTGGCCCCCAAAATATTTAGTTAATAAAACATTGGATTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAGTTTTGGCCCCCAAAATATTTAGTTAATAAAACATTGGATTGT  949

seq1  TGGCTCCAAACTCTAAGTGACTTTGATAAACTTTGTCCCAATTTTGTTAG  1000
      ||||||| ||||||||||||||||||||||||||||||    ||||||||
seq2  TGGCTCC-AACTCTAAGTGACTTTGATAAACTTTGTCC---ATTTGTTAG  995

seq1  TTGGCCAGAGGCAAACCATTTACAGTAACCATGCTTTTCTCTTCCTAGAT  1050
      |  | |||| ||||  |||||||||||  |||||||||||||| ||||||
seq2  T--GGCAGA-GCAA--CATTTACAGTA--CATGCTTTTCTCTT-CTAGAT  1037

seq1  AAAAATATACAACTCCAGATA  1071
        |||||||| ||||||||||
seq2  --AAATATAC-ACTCCAGATA  1055


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