BAC Information

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BAC

Clone NameB6Ng01-272B14
Chromosome3 (Build37)
Map Location 55,888,080 - 56,040,746
singlet/doubletdoublet
Overlap genenone
Upstream geneSpg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272B14.bB6Ng01-272B14.g
ACCGA074009GA074010
length1,171271
definitionB6Ng01-272B14.b B6Ng01-272B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,039,583 - 56,040,746)(55,888,080 - 55,888,350)
sequence
gaattctatgagactgatatcatcatttttacattttagataaaattaat
tctactatattttataacattttctaaatgtgctactgggttcatggcat
tgacagcagattttgaaattacgggacttgttctcacaagttaattaatt
aattaattaattaatttcttcttaattaattatcaaacatagttggctga
ctctggaagtgaaatttcttttttattttcccattttctcatatgcacgc
tctgctacagcttactgaacgagctgaaaattcaataaataaatgcattc
ataaatgatttagcagaatgcaaaaggaaagacaggctgccagagccaca
ccacaggtctcccactttgccaaaaatgattacagtggtgtcagggttga
ttatgtgaatccaggaggtcaggatgctggggaggctgctgcttttgcag
ctgctgctgtcagagccttgctgaaggggctgttcaggccccagtgtctg
cacacatgtgatgacaaggcagaggtttgaacatgtccatgtcacagttc
cttcctccccttcatactcagtgaagatgttccactgaaattcaagacat
cagcttagaatatgttaatgttcataaattaaattgctcacagaaggtga
tcaatttttaatgtttacactcaagatgttctttttaattaacacttagc
tacatttgttctctgtgtgatgcagaaaatgtctgaacttgcagagagct
gcaataagttgttagatattaaactgcagcaattttcagacctgtgcctt
tccactaaagaaagaaggcttagcttcagatagctgacagcatacagaca
ccagagttactctcagaagtagcaggaagttactcagtatgcagattatt
tttagaagttactttgaattcctgataaggaggtggatatgctcaatacg
ggagtgtgaaaatttgaaagggatttctctggttcagcccaaaggttgat
taatttagaatcccataacattactcgttagccgtacagaaactagaatt
aaaaggatgggttgttcactaggcaggcatgatcggtgggaaatgggact
aacctcagaggaaaacacggtctgggctgaaaaacatgttcatggtccaa
ggtggagcagaggcttcatgg

aatactgtgtcaggcatctgagaaaataaaaaattaaatccaccacagat
ttttgtctcaataatcaataaatggacatataaatgaataatgaagatgt
ggataaagtaattatgaaaagaggcattagttatgtttgaaaacaatatc
tatcaaagaggatgggtagtagcactactttgatgcaacacttgcctgcc
acatgtgtctctttggttggatccccaatgacagaggcagaaaggggagt
aggtaatgggggaggaagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_56039583_56040746
seq2: B6Ng01-272B14.b_46_1216 (reverse)

seq1  CCATGGAAGCCTCTCTGCT-CACTTTGGCCCATGAACATG-TTTTCAGCC  48
      |||| |||||  ||||||| ||| |||| ||||||||||| |||||||||
seq2  CCAT-GAAGC--CTCTGCTCCACCTTGGACCATGAACATGTTTTTCAGCC  47

seq1  CAGACCGTGTTTT-CTCTGA-GTTAGGTCCATTTCCCA-CGATCATG-CT  94
      ||||||||||||| |||||| |||||  |||||||||| |||||||| ||
seq2  CAGACCGTGTTTTCCTCTGAGGTTAGTCCCATTTCCCACCGATCATGCCT  97

seq1  G-CTAGTGAACAACCCATCTTTTTAAATTCTAG-TTCTGTACGGCTAACG  142
      | ||||||||||||||||| |||| |||||||| ||||||||||||||||
seq2  GCCTAGTGAACAACCCATCCTTTT-AATTCTAGTTTCTGTACGGCTAACG  146

seq1  AGTAATGTTTATGGATTCTAAATTAATCAAC--TTTGGCTGAA-CAGAGA  189
      |||||||||   |||||||||||||||||||  || ||||||| ||||||
seq2  AGTAATGTTATGGGATTCTAAATTAATCAACCTTTGGGCTGAACCAGAGA  196

seq1  AATCCCTTTC-AATTTTCACACTCCCGTATTTGAGCATATCCACCTCCTT  238
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  AATCCCTTTCAAATTTTCACACTCCCGTA-TTGAGCATATCCACCTCCTT  245

seq1  ATCAGGAATTC-AAGTAACTTTCTAAAAATAATCTGCATACTGAGTAACT  287
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  ATCAGGAATTCAAAGTAAC-TTCTAAAAATAATCTGCATACTGAGTAACT  294

seq1  TCCTGCTACTTCTGAGAGTAACTCTGGTGTCTGTATGCTGTCAGCTATCT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTACTTCTGAGAGTAACTCTGGTGTCTGTATGCTGTCAGCTATCT  344

seq1  GAAGCTAAGCCTTCTTTCTTTAGTGGAAAGGCACAGGTCTGAAAATTGCT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAAGCCTTCTTTCTTTAGTGGAAAGGCACAGGTCTGAAAATTGCT  394

seq1  GCAGTTTAATATCTAACAACTTATTGCAGCTCTCTGCAAGTTCAGACATT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTAATATCTAACAACTTATTGCAGCTCTCTGCAAGTTCAGACATT  444

seq1  TTCTGCATCACACAGAGAACAAATGTAGCTAAGTGTTAATTAAAAAGAAC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATCACACAGAGAACAAATGTAGCTAAGTGTTAATTAAAAAGAAC  494

seq1  ATCTTGAGTGTAAACATTAAAAATTGATCACCTTCTGTGAGCAATTTAAT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAGTGTAAACATTAAAAATTGATCACCTTCTGTGAGCAATTTAAT  544

seq1  TTATGAACATTAACATATTCTAAGCTGATGTCTTGAATTTCAGTGGAACA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAACATTAACATATTCTAAGCTGATGTCTTGAATTTCAGTGGAACA  594

seq1  TCTTCACTGAGTATGAAGGGGAGGAAGGAACTGTGACATGGACATGTTCA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTGAGTATGAAGGGGAGGAAGGAACTGTGACATGGACATGTTCA  644

seq1  AACCTCTGCCTTGTCATCACATGTGTGCAGACACTGGGGCCTGAACAGCC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTGCCTTGTCATCACATGTGTGCAGACACTGGGGCCTGAACAGCC  694

seq1  CCTTCAGCAAGGCTCTGACAGCAGCAGCTGCAAAAGCAGCAGCCTCCCCA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCAAGGCTCTGACAGCAGCAGCTGCAAAAGCAGCAGCCTCCCCA  744

seq1  GCATCCTGACCTCCTGGATTCACATAATCAACCCTGACACCACTGTAATC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGACCTCCTGGATTCACATAATCAACCCTGACACCACTGTAATC  794

seq1  ATTTTTGGCAAAGTGGGAGACCTGTGGTGTGGCTCTGGCAGCCTGTCTTT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGCAAAGTGGGAGACCTGTGGTGTGGCTCTGGCAGCCTGTCTTT  844

seq1  CCTTTTGCATTCTGCTAAATCATTTATGAATGCATTTATTTATTGAATTT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCATTCTGCTAAATCATTTATGAATGCATTTATTTATTGAATTT  894

seq1  TCAGCTCGTTCAGTAAGCTGTAGCAGAGCGTGCATATGAGAAAATGGGAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCGTTCAGTAAGCTGTAGCAGAGCGTGCATATGAGAAAATGGGAA  944

seq1  AATAAAAAAGAAATTTCACTTCCAGAGTCAGCCAACTATGTTTGATAATT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAGAAATTTCACTTCCAGAGTCAGCCAACTATGTTTGATAATT  994

seq1  AATTAAGAAGAAATTAATTAATTAATTAATTAATTAACTTGTGAGAACAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAAGAAATTAATTAATTAATTAATTAATTAACTTGTGAGAACAA  1044

seq1  GTCCCGTAATTTCAAAATCTGCTGTCAATGCCATGAACCCAGTAGCACAT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGTAATTTCAAAATCTGCTGTCAATGCCATGAACCCAGTAGCACAT  1094

seq1  TTAGAAAATGTTATAAAATATAGTAGAATTAATTTTATCTAAAATGTAAA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAATGTTATAAAATATAGTAGAATTAATTTTATCTAAAATGTAAA  1144

seq1  AATGATGATATCAGTCTCATAGAATTC  1164
      |||||||||||||||||||||||||||
seq2  AATGATGATATCAGTCTCATAGAATTC  1171


seq1: chr3_55888080_55888350
seq2: B6Ng01-272B14.g_73_343

seq1  AATACTGTGTCAGGCATCTGAGAAAATAAAAAATTAAATCCACCACAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTGTCAGGCATCTGAGAAAATAAAAAATTAAATCCACCACAGAT  50

seq1  TTTTGTCTCAATAATCAATAAATGGACATATAAATGAATAATGAAGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTCAATAATCAATAAATGGACATATAAATGAATAATGAAGATGT  100

seq1  GGATAAAGTAATTATGAAAAGAGGCATTAGTTATGTTTGAAAACAATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAGTAATTATGAAAAGAGGCATTAGTTATGTTTGAAAACAATATC  150

seq1  TATCAAAGAGGATGGGTAGTAGCACTACTTTGATGCAACACTTGCCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGAGGATGGGTAGTAGCACTACTTTGATGCAACACTTGCCTGCC  200

seq1  ACATGTGTCTCTTTGGTTGGATCCCCAATGACAGAGGCAGAAAGGGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTCTCTTTGGTTGGATCCCCAATGACAGAGGCAGAAAGGGGAGT  250

seq1  AGGTAATGGGGGAGGAAGAGG  271
      |||||||||||||||||||||
seq2  AGGTAATGGGGGAGGAAGAGG  271


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