BAC Information

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BAC

Clone NameB6Ng01-272E14
Chromosome3 (Build37)
Map Location 73,614,576 - 73,809,294
singlet/doubletdoublet
Overlap geneLOC667425
Upstream gene2010204N08Rik, Slitrk3, Bche
Downstream geneLOC619764, LOC667434, LOC100041551, EG667459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272E14.bB6Ng01-272E14.g
ACCGA074151GA074152
length1,1111,081
definitionB6Ng01-272E14.b B6Ng01-272E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,808,175 - 73,809,294)(73,614,576 - 73,615,669)
sequence
gaattccaccactagagtaagtgcatgcagacatcttgcccctcttcagt
taggatttctatactacaatatctcttgaaagtcataggctgtccttaat
aaagtaagcccttcattttcagacagatgataacatttgctcacttagaa
tgctaacactgctatctgtctgcttaaacaagcttgaaaagcatgcaagc
ttagagagaaatgtgaattgaaaatgtcaggaggatgagacagattgcat
tgtaggtacgtgagcctttatatggatttttaagaaatgattcgtgccta
tgatgtaatgtgttatataaccaagtagaagacaccctgacattctgtta
ctttctttactcacataatttctgtaagagttaaaatatttgaaagggag
ctcatgacagcactccacttgaggaactaaaacatttcttccagaagcca
ggaataggggtgaaaaagacatctcagaagggaaccaacaagaatacgac
aaagactgcattaatgacagaaagacactgacctaatgctctagcaccac
acttagaacgaggcacaaattcattctctgacctggactacagacttcag
tttgtatatctgttaccagctctctgctggtgacccttcatcttgatgag
tgcttgcagtcaccttcaactttcccaccctccctggaattcaacctccc
acgttcctttcagggatggagaacttcccttctccaaggttttttctaat
atgagtgaaatgcttttgattatttaaattcttactgtgtctaaaactca
gttcagtcaaaatatctgtcatacttttcacagatttggcaagactttgt
tattagatcagaaagataattgtttgggaagctttttcaatgaagcagaa
aaactcaagtgcatgactgacctcatcttgtaacatgtcccagcatcata
tcaagttttgacattccaaaatttctctagaatttagcagagccccgaga
tatgaatcagctctaagttagaaatcatttgatcggggtggactgctgtg
cattattgatgaatttactttttcaatcagtatccatgagaagatgtccc
aagttctgact
gaattcttttcctggtgctatctgcaaattgctctcagaaaatctgattc
tgtaaaagactgccactgaaaagatcaagccaatttaacccataatcaga
catcataaataagcaattatccaaaaatggttactctggaaagtgtaaaa
tgagtgtgaggtatatctaaagacttgttaaaacgtaactgtagtggcta
tttctggttttcaacttgcctatatttggaatgaacaataatccagaatt
ggaagactcaccagtgatcctaatctgggggttgaggcaagtttctgacc
tggatcttggcatggagttcttgaggcatagtggctatgattccagaaga
ttaaggctgggatacctctgagttcaaggtcatctgggattataggcatg
gtggcacacacctttaatctgggctatatcttctgctgttgacctgcata
aggacattggaagaattaagatttacactttatctcttctcttgcttccc
ttgtgagactgagcaactgctaaatccttggacttccatttacagctgct
gctgaacattgttgggagttggactacagactgtaagtcatcaataaatt
cctttactatatagagatcacccataatttctgtgactctagagaaccct
aactaatacaataggtttaaattttctatcttcatgaattgtaagaagtg
cgaagagtgccaaaggcaaagaagaaaaccatcctcaagaactttgaaat
cagacattgtaatttatgcatgtaaatccaaactgaagtttaggaagaaa
gactgttgcaaactgcacgacatactgacaaatgcagaacaattgagttc
agcatggaggttctatttttaaaaagcaaggaagaaaagaaaactacaat
tctgcaaaactttaagcatatataaaatactctactaaaattatgatcta
taaataattaaaagaccagatgtaaagaaagcatactaaataaaacacaa
tgaaatatagagacgcgaaggcataaaaacatgttatgggagacaatctc
aatctgatggaaagcagtaatactttgtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_73808175_73809294
seq2: B6Ng01-272E14.b_47_1157 (reverse)

seq1  AGTCAGACTTGGGGACATCTTCTCATGGATACTGATTGAAAAAGTAAAAT  50
      |||||||  | |||||||||||||||||||||||||||||||||||||  
seq2  AGTCAGAACTTGGGACATCTTCTCATGGATACTGATTGAAAAAGTAAA--  48

seq1  TTCATCCAAATAAATGCCACAGGCAAGTCCACCCCGATC-AATGATTTCT  99
      ||||||  ||| |||| |||||   |||||||||||||| ||||||||||
seq2  TTCATC--AAT-AATG-CACAG--CAGTCCACCCCGATCAAATGATTTCT  92

seq1  -ACTTAGAGCTGATTCATTATCTCGGGGCCTCTGCTAAATTCTAGAGAAA  148
       |||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  AACTTAGAGCTGATTCA-TATCTCGGGG-CTCTGCTAAATTCTAGAGAAA  140

seq1  TTTTGGAATGTCAAAACTTGATATGATGCTGGGGACATGTTACAAGATGA  198
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTGGAATGTCAAAACTTGATATGATGCT-GGGACATGTTACAAGATGA  189

seq1  GGTCAGTCATGCACTTTGAGTTTTTCTGCTTCATTGAAAAAGCTTCCCAA  248
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGTCAGTCATGCAC-TTGAGTTTTTCTGCTTCATTGAAAAAGCTTCCCAA  238

seq1  ACAATTATCTTTCTGATCTAATAACAAAGTCTTGCCAAATCTGTG-AAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACAATTATCTTTCTGATCTAATAACAAAGTCTTGCCAAATCTGTGAAAAG  288

seq1  TATGACAGATATTTTGACTGAACTGAGTTTTAGACACAGTAAGAATTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAGATATTTTGACTGAACTGAGTTTTAGACACAGTAAGAATTTAA  338

seq1  ATAATCAAAAGCATTTCACTCATATTAGAAAAAACCTTGGAGAAGGGAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAAAAGCATTTCACTCATATTAGAAAAAACCTTGGAGAAGGGAAG  388

seq1  TTCTCCATCCCTGAAAGGAACGTGGGAGGTTGAATTCCAGGGAGGGTGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATCCCTGAAAGGAACGTGGGAGGTTGAATTCCAGGGAGGGTGGG  438

seq1  AAAGTTGAAGGTGACTGCAAGCACTCATCAAGATGAAGGGTCACCAGCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAAGGTGACTGCAAGCACTCATCAAGATGAAGGGTCACCAGCAG  488

seq1  AGAGCTGGTAACAGATATACAAACTGAAGTCTGTAGTCCAGGTCAGAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGTAACAGATATACAAACTGAAGTCTGTAGTCCAGGTCAGAGAA  538

seq1  TGAATTTGTGCCTCGTTCTAAGTGTGGTGCTAGAGCATTAGGTCAGTGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGTGCCTCGTTCTAAGTGTGGTGCTAGAGCATTAGGTCAGTGTC  588

seq1  TTTCTGTCATTAATGCAGTCTTTGTCGTATTCTTGTTGGTTCCCTTCTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCATTAATGCAGTCTTTGTCGTATTCTTGTTGGTTCCCTTCTGA  638

seq1  GATGTCTTTTTCACCCCTATTCCTGGCTTCTGGAAGAAATGTTTTAGTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTTTTCACCCCTATTCCTGGCTTCTGGAAGAAATGTTTTAGTTC  688

seq1  CTCAAGTGGAGTGCTGTCATGAGCTCCCTTTCAAATATTTTAACTCTTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGGAGTGCTGTCATGAGCTCCCTTTCAAATATTTTAACTCTTAC  738

seq1  AGAAATTATGTGAGTAAAGAAAGTAACAGAATGTCAGGGTGTCTTCTACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTATGTGAGTAAAGAAAGTAACAGAATGTCAGGGTGTCTTCTACT  788

seq1  TGGTTATATAACACATTACATCATAGGCACGAATCATTTCTTAAAAATCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATATAACACATTACATCATAGGCACGAATCATTTCTTAAAAATCC  838

seq1  ATATAAAGGCTCACGTACCTACAATGCAATCTGTCTCATCCTCCTGACAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGGCTCACGTACCTACAATGCAATCTGTCTCATCCTCCTGACAT  888

seq1  TTTCAATTCACATTTCTCTCTAAGCTTGCATGCTTTTCAAGCTTGTTTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTCACATTTCTCTCTAAGCTTGCATGCTTTTCAAGCTTGTTTAA  938

seq1  GCAGACAGATAGCAGTGTTAGCATTCTAAGTGAGCAAATGTTATCATCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGATAGCAGTGTTAGCATTCTAAGTGAGCAAATGTTATCATCTG  988

seq1  TCTGAAAATGAAGGGCTTACTTTATTAAGGACAGCCTATGACTTTCAAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAATGAAGGGCTTACTTTATTAAGGACAGCCTATGACTTTCAAGA  1038

seq1  GATATTGTAGTATAGAAATCCTAACTGAAGAGGGGCAAGATGTCTGCATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTAGTATAGAAATCCTAACTGAAGAGGGGCAAGATGTCTGCATG  1088

seq1  CACTTACTCTAGTGGTGGAATTC  1120
      |||||||||||||||||||||||
seq2  CACTTACTCTAGTGGTGGAATTC  1111

seq1: chr3_73614576_73615669
seq2: B6Ng01-272E14.g_67_1147

seq1  GAATTCTTTTCCTGGTGCTATCTGCAAATTGCTCTCAGAAAATCTGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCTGGTGCTATCTGCAAATTGCTCTCAGAAAATCTGATTC  50

seq1  TGTAAAAGACTGCCACTGAAAAGATCAAGCCAATTTAACCCATAATCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGACTGCCACTGAAAAGATCAAGCCAATTTAACCCATAATCAGA  100

seq1  CATCATAAATAAGCAATTATCCAAAAATGGTTACTCTGGAAAGTGTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAAATAAGCAATTATCCAAAAATGGTTACTCTGGAAAGTGTAAAA  150

seq1  TGAGTGTGAGGTATATCTAAAGACTTGTTAAAACGTAACTGTAGTGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGAGGTATATCTAAAGACTTGTTAAAACGTAACTGTAGTGGCTA  200

seq1  TTTCTGGTTTTCAACTTGCCTATATTTGGAATGAACAATAATCCAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTTTTCAACTTGCCTATATTTGGAATGAACAATAATCCAGAATT  250

seq1  GGAAGACTCACCAGTGATCCTAATCTGGGGGTTGAGGCAAGTTTCTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACTCACCAGTGATCCTAATCTGGGGGTTGAGGCAAGTTTCTGACC  300

seq1  TGGATCTTGGCATGGAGTTCTTGAGGCATAGTGGCTATGATTCCAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTGGCATGGAGTTCTTGAGGCATAGTGGCTATGATTCCAGAAGA  350

seq1  TTAAGGCTGGGATACCTCTGAGTTCAAGGTCATCTGGGATTATAGGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCTGGGATACCTCTGAGTTCAAGGTCATCTGGGATTATAGGCATG  400

seq1  GTGGCACACACCTTTAATCTGGGCTATATCTTCTGCTGTTGACCTGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACACACCTTTAATCTGGGCTATATCTTCTGCTGTTGACCTGCATA  450

seq1  AGGACATTGGAAGAATTAAGATTTACACTTTATCTCTTCTCTTGCTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTGGAAGAATTAAGATTTACACTTTATCTCTTCTCTTGCTTCCC  500

seq1  TTGTGAGACTGAGCAACTGCTAAATCCTTGGACTTCCATTTACAGCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGACTGAGCAACTGCTAAATCCTTGGACTTCCATTTACAGCTGCT  550

seq1  GCTGAACATTGTTGGGAGTTGGACTACAGACTGTAAGTCATCAATAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACATTGTTGGGAGTTGGACTACAGACTGTAAGTCATCAATAAATT  600

seq1  CCTTTACTATATAGAGATCACCCATAATTTCTGTGACTCTAGAGAACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTATATAGAGATCACCCATAATTTCTGTGACTCTAGAGAACCCT  650

seq1  AACTAATACAATAGGTTTAAATTTTCTATCTTCATGAATTGTAAGAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATACAATAGGTTTAAATTTTCTATCTTCATGAATTGTAAGAAGTG  700

seq1  CGAAGAGTGCCAAAGGCAAAGAAGAAAACCATCCTCAAGAACTTTGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAGTGCCAAAGGCAAAGAAGAAAACCATCCTCAAGAACTTTGAAAT  750

seq1  CAGACATTGTAATTTATGCATGTAAATCCAAACTGAAGTTTAGGAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTGTAATTTATGCATGTAAATCCAAACTGAAGTTTAGGAAGAAA  800

seq1  GACTGTTGCAAACTGCACGACATACTGACAAATGCAGAACAATTGAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTGCAAACTGCACGACATACTGACAAATGCAGAACAATTGAGTTC  850

seq1  AGCATGGAGGTTCTATTTTTAAAAAGCAAGGAAGAAAAGAAAACTACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGAGGTTCTATTTTTAAAAAGCAAGGAAGAAAAGAAAACTACAAT  900

seq1  TCTGCAAAACTTTAAGCATATTATAAAAATACTCTACTAAAATTATGATC  950
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  TCTGCAAAACTTTAAGCATA-TAT-AAAATACTCTACTAAAATTATGATC  948

seq1  TATAAAATAATTAAAAGACCAAGAATGTAAAAGAAAAGCAATACTAAAT-  999
      ||| |||||||||||||||||   |||||||   ||||| ||||||||| 
seq2  TAT-AAATAATTAAAAGACCA--GATGTAAA--GAAAGC-ATACTAAATA  992

seq1  AAACACAATGAAATATTAGAAGACGCGAAAGGCAATTAAAAACATG-TAT  1048
      ||||||||||||||| ||| ||||||| ||||||  |||||||||| |||
seq2  AAACACAATGAAATA-TAG-AGACGCG-AAGGCA--TAAAAACATGTTAT  1037

seq1  GGGAGACAAATTCTCAAATCTGATGAAAAGCAGTAATACTTT-TGTT  1094
      |||||||||  |||| ||||||||| |||||||||||||||| ||||
seq2  GGGAGACAA--TCTC-AATCTGATGGAAAGCAGTAATACTTTGTGTT  1081