BAC Information

Click to search

BAC

Clone NameB6Ng01-272H11
Chromosome3 (Build37)
Map Location 156,587,669 - 156,588,741
singlet/doubletsinglet
Overlap geneNegr1
Upstream geneLOC624519, LOC100040901, 4930570G19Rik, LOC100041152, LOC668853
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272H11.bB6Ng01-272H11.g
ACCGA074285GA074286
length1,0681,195
definitionB6Ng01-272H11.b B6Ng01-272H11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatcttgtaacttcagacaattctccttatctttaaagcagtgt
tttgggtttttttttttttcctatggtggcatgagtattacctgtgtcct
ctaaaacacttagaggaccttaacagaaaagtataatgctaatttaagag
agcattattaatttcaagactgttaaaaatgaataattcagagctgtggg
tactgtaccataaagatgattggtataatcaaaatcacaaccttattgtt
cttaacacattcaggtccccagcattaagcatcttttcaattaatttttc
agcatttttcaaatgtcaatacacatatcttaaaagaggctttttatttt
tttcctttggaggttaaatggttgtggcggcttcctccagagtggagttg
gctatttctgcttcataaatcaactgcttttcttctaggaccaaaggagt
ccccagattcatttatttcatttttaaaaagaacaaaaccaaaaatatta
ttgagtgtcttccaagtagtttcacccatggatgaaaaatgaagttccat
caaaggctgccagggaaagccagatattatccaaatgttgtttctcagca
attgtgtatcgattgagtaacttggtctgctttctgatggctgcaactca
ctaggaggaacttggcaagtctcggatttgcacagaggaaaatatactac
acccaagtcacatctttcgatagggaattaatgcaaggaaatccgcttct
agaatttgtgtgtgtttaagtttgcgttcacttgggagaatttaaaggta
agtgtacaggatctcgggtcaaagctccagaactgtgggatctggaattc
ataaagggagtcccttactgctctgcaacaaatgttgaagcttagtgcca
gtaaacacagtctatggcaactcctacatggatatttattaatataatta
ccccagagcctgatagtttatgtctataaaccattcagaggctgctgcag
agattctccaggacaaagcttatcttagctgcatcatgagttctgggtta
tctagatacagagtgagt
gaattcagtatttaagtaaaaaaaaaatcagaaaatgaaagagaactttc
tgaactcgatggtgtctatgaataaatttcatctttcctaggatgtaatg
atgagaggataaatgttttccatctactgtgataaataacacggatccac
tctgaacctactcacattctacataaaagaagtaatggtcactgttgagt
tctatttgaaaattaattcagtaaatgtcctagaaggaaatgaagggagg
tcactgagcctttgggttgggcaaggagatctgacataaataccaaacac
acaatacacctgagagatattgatgatctggattccttcacaatgaaata
aaacttgctttggaaaggactcaattaattaacatccaagacatataagg
agagaacatattggtgaatcacaagtcattcaaatgtcaaagacatcata
aactttaggacatgtattcacaatattgagtaaaacgtcacgtaagaaaa
gctacagacctcagtgtaaattatgttgatttagccatgtgccagtatag
tagattctttttggggtacaggacttcactacccatatgtagtgggtgag
gtttccagtaccaagaattatatccctcttattgagaaggccataagtcc
agttagacagaggtgagttaccaccaatgtatgctacttactatgtcttt
accaatatcttgtcatgttggtcattgttatggctcatagatattgcaga
taaattgattgctttcctctgtttgaagtctatatggtattttctgggtc
tatagaagctatactgcagaaaggaggatttcaggtcagatccagttaaa
atcaattaaaaaccatgtcttcagcaatgggggccctaccctcaaccccg
taaagcaaccaagggaatcgcataaagtttatattggttttggaaggcac
ttggaacacccctaaccaagcattgagaaggacatttctcatgccctgac
actggggttttgttagtctaggtggctcttttggggaagcattggtaact
agaaattactctttatggcatacctctcacatctactactacactcactt
cctcggtgagtagagaggaggagtacgtgaggtgaggaggtcggagagat
actagtagtgaccttaatgtgctattccatgtaaataaacgctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_156587669_156588741
seq2: B6Ng01-272H11.b_47_1114

seq1  GAATTCCATCTTGTAACTTCAGACAATTCTCCTTATCTTTAAAGCAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTTGTAACTTCAGACAATTCTCCTTATCTTTAAAGCAGTGT  50

seq1  TTTGGGTTTTTTTTTTTTTCCTATGGTGGCATGAGTATTACCTGTGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTTTTTTTTTTTCCTATGGTGGCATGAGTATTACCTGTGTCCT  100

seq1  CTAAAACACTTAGAGGACCTTAACAGAAAAGTATAATGCTAATTTAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACACTTAGAGGACCTTAACAGAAAAGTATAATGCTAATTTAAGAG  150

seq1  AGCATTATTAATTTCAAGACTGTTAAAAATGAATAATTCAGAGCTGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATTAATTTCAAGACTGTTAAAAATGAATAATTCAGAGCTGTGGG  200

seq1  TACTGTACCATAAAGATGATTGGTATAATCAAAATCACAACCTTATTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTACCATAAAGATGATTGGTATAATCAAAATCACAACCTTATTGTT  250

seq1  CTTAACACATTCAGGTCCCCAGCATTAAGCATCTTTTCAATTAATTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACACATTCAGGTCCCCAGCATTAAGCATCTTTTCAATTAATTTTTC  300

seq1  AGCATTTTTCAAATGTCAATACACATATCTTAAAAGAGGCTTTTTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTTCAAATGTCAATACACATATCTTAAAAGAGGCTTTTTATTTT  350

seq1  TTTCCTTTGGAGGTTAAATGGTTGTGGCGGCTTCCTCCAGAGTGGAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGGAGGTTAAATGGTTGTGGCGGCTTCCTCCAGAGTGGAGTTG  400

seq1  GCTATTTCTGCTTCATAAATCAACTGCTTTTCTTCTAGGACCAAAGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCTGCTTCATAAATCAACTGCTTTTCTTCTAGGACCAAAGGAGT  450

seq1  CCCCAGATTCATTTATTTCATTTTTAAAAAGAACAAAACCAAAAATATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGATTCATTTATTTCATTTTTAAAAAGAACAAAACCAAAAATATTA  500

seq1  TTGAGTGTCTTCCAAGTAGTTTCACCCATGGATGAAAAATGAAGTTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGTCTTCCAAGTAGTTTCACCCATGGATGAAAAATGAAGTTCCAT  550

seq1  CAAAGGCTGCCAGGGAAAGCCAGATATTATCCAAATGTTGTTTCTCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTGCCAGGGAAAGCCAGATATTATCCAAATGTTGTTTCTCAGCA  600

seq1  ATTGTGTATCGATTGAGTAACTTGGTCTGCTTTCTGATGGCTGCAACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTATCGATTGAGTAACTTGGTCTGCTTTCTGATGGCTGCAACTCA  650

seq1  CTAGGAGGAACTTGGCAAGTCTCGGATTTGCACAGAGGAAAATATACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGGAACTTGGCAAGTCTCGGATTTGCACAGAGGAAAATATACTAC  700

seq1  ACCCAAGTCACATCTTTCGATAGGGAATTAATGCAAGGAAATCCGCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGTCACATCTTTCGATAGGGAATTAATGCAAGGAAATCCGCTTCT  750

seq1  AGAATTTGTGTGTGTTTAAGTTTGCGTTCACTTGGGAGAATTTAAAGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGTGTGTGTTTAAGTTTGCGTTCACTTGGGAGAATTTAAAGGTA  800

seq1  AGTGTACAGGATCTCGGGTCAAAGCTCCAGAACTGTGGGATCTGGAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACAGGATCTCGGGTCAAAGCTCCAGAACTGTGGGATCTGGAATTC  850

seq1  ATAAA-GGAGTCCCTTACTGCTCTGCAACAAATGTTGAAGCTTAGTGCCA  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGAGTCCCTTACTGCTCTGCAACAAATGTTGAAGCTTAGTGCCA  900

seq1  GTAAACACAGTCTATGGCAACTCCTACATGGATATTTAATAATATAATTA  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTAAACACAGTCTATGGCAACTCCTACATGGATATTTATTAATATAATTA  950

seq1  CCCCAGAGCCTGATAGTTTATGTCTATAAACCATTCAGAGGCTGCTGCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGCCTGATAGTTTATGTCTATAAACCATTCAGAGGCTGCTGCAG  1000

seq1  GAGGATTCTCCCAGGACAAAGGCTATCTTAGGCTGCATCATGAGTTCTGG  1049
         |||||| |||||||||||  ||||||| |||||||||||||||||||
seq2  --AGATTCT-CCAGGACAAAGCTTATCTTA-GCTGCATCATGAGTTCTGG  1046

seq1  GTTATCCTAGAATACAGAGTGAGT  1073
      ||||| |||| |||||||||||||
seq2  GTTAT-CTAG-ATACAGAGTGAGT  1068