BAC Information

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BAC

Clone NameB6Ng01-273A02
Chromosome3 (Build37)
Map Location 42,242,275 - 42,402,986
singlet/doubletdoublet
Overlap geneLOC100039204
Upstream genePpia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
Downstream geneLOC100039219, LOC677788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273A02.bB6Ng01-273A02.g
ACCGA074687GA074688
length1,210517
definitionB6Ng01-273A02.b B6Ng01-273A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,401,786 - 42,402,986)(42,242,275 - 42,242,791)
sequence
gaattctgaagacatggttcaagtaatatttgtgattacaaataaccaaa
gtcacacaaacaaaccataggtcaagtatatttctctcacagggaagaca
acacaataaaatagaaagtttcaggtagtggtttatcttttgaggttgcc
tatgttcgaggactttaaagtccttttgtgagcctcatggtgagatctta
tctacttgcttggcagtgtttgatgccacatgctcacaaaggtggtagtg
tgtttccaggtggcatgcccagcatccagccttacttgatcactgtataa
aatagagaaaataataacccagcatctcctaactctccactatcatttcc
aggtcagttgccctttgggaatacaaatgcccaacagggtcaggtcaagt
taaaggaatagtggactgtcatattaatagaaagtgacaagttgaaatat
ttaatatttcacagaaattaatttattaataaatacttttaatgaatgtg
tgtgtgttctttagcactgaaagatgcttcattttctctttcaatcttat
aaagtaaaataagaatcccaccatccctgaattctgaaacaaactcacag
cagttatcaactcctactaatttaaacctgagcttcctaatctccaaagt
tatcattttaatttatttttgaatttcttctttacaatattttcatccat
cgaaacaaaagtatgacttagaaaatttgttgtttgctcctgcctgagcc
tgcttgactcctataattaccttaatgatcaggctcaatagttttattcc
caaagtctcagcctgcctcctcctttgggtctctcaatatcacataggga
ctttttaactggggtcacattagcaagaggttgacacaatggaactccaa
aatttttcaaatgcctattgcagtttttagtcataacttttggccaatgg
ttctgaggccttattacactgaaatttaaaacaaatattggaaagaacgg
gtacttgtgtccttttacttcttcaatctctgagatgtcactacatttag
tctatgggttcaaatttctcttctatagcaccaaccgtgatgttgtctgg
ttttcaatgctgatgcttgtgccccaatgaaagagaaagtggccaaaagt
ttgtaattacatcgtatagtgcctctaaatgcacaggtatccacatttgt
tgtcacacac

gaattcattacactcttgagttgggggaagtattgagagccccgaaaggg
aaaggaactccacaagaagacaaacagagtcaactaacttaggctcttgg
gagctctcggggactgagccaccaactaaagagaatactcaggttggacc
taggccttgagcacatctgtagctcagtcatcatgtgggtccctcaaaaa
ctggagtggaggctgttcttaaagctgtagggtaaccatgaaaacattcc
ctaacagggttgccttgtctgacctcagtgatttaccagggtgaggggga
atacccaggtagggctctaccctttcagaggagagagcgtggggaatagg
gagagtgaccctgtgagtgggacactgaatggtaggtcagggcagcattt
gggatgtaaattataaggaaaaataaaagaaagagagagagaccggtccc
atgggcaagaaccaatccctgacactattaatgatactctgttatgcttt
ctggcaggaacctagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_42401786_42402986
seq2: B6Ng01-273A02.b_47_1256 (reverse)

seq1  GTGTGTG----CAAATGTG--TACCTGTGCATTTACA-GCA-TATACGTT  42
      |||||||    ||||||||  |||||||||||||| | ||| |||||| |
seq2  GTGTGTGACAACAAATGTGGATACCTGTGCATTTAGAGGCACTATACGAT  50

seq1  GTTATTTCCAACTTTTTG-CACTTTCTCTTTCA-TGGGGCAC-AGCATCA  89
      || ||| | ||||||| | |||||||||||||| |||||||| |||||||
seq2  GTAATTACAAACTTTTGGCCACTTTCTCTTTCATTGGGGCACAAGCATCA  100

seq1  GCATTGAAAACCAGACAACATCACGTTGGGTGCTAAATAGAAAGAAGA-A  138
      ||||||||||||||||||||||||| | ||||||      | |||||| |
seq2  GCATTGAAAACCAGACAACATCACGGTTGGTGCT------ATAGAAGAGA  144

seq1  AAATTGAAACCATAGACTAAATGTAGTGACATCTCAGAGATTGAAGAAGT  188
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAACCCATAGACTAAATGTAGTGACATCTCAGAGATTGAAGAAGT  194

seq1  -AAAGGACACAAGTACCCGTTCTTTCCAATATTTGTTTTAAATTTCAGTG  237
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGACACAAGTACCCGTTCTTTCCAATATTTGTTTTAAATTTCAGTG  244

seq1  TAATAAGGCCTCAGAACCATTGGCCAAAAGTTATGACTAAAAACTGCAAT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGCCTCAGAACCATTGGCCAAAAGTTATGACTAAAAACTGCAAT  294

seq1  AGGCATTTGAAAAATTTTGGAGTTCCATTGTGTCAACCTCTTGCTAATGT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTGAAAAATTTTGGAGTTCCATTGTGTCAACCTCTTGCTAATGT  344

seq1  GACCCCAGTT-AAAAGTCCCTATGTGATATTGAGAGA-CCAAAGGAGGAG  385
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  GACCCCAGTTAAAAAGTCCCTATGTGATATTGAGAGACCCAAAGGAGGAG  394

seq1  GCAGGCTGAGACTTTGGGAATAAAACTATTGAGCCTGATCATTAAGGTAA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTGAGACTTTGGGAATAAAACTATTGAGCCTGATCATTAAGGTAA  444

seq1  TTATAGGAGTCAAGCAGGCTCAGGCAGGAGCAAACAACAAATTTTCTAAG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGAGTCAAGCAGGCTCAGGCAGGAGCAAACAACAAATTTTCTAAG  494

seq1  TCATACTTTTGTTTCGATGGATGAAAATATTGTAAAGAAGAAATTCAAAA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTTTTGTTTCGATGGATGAAAATATTGTAAAGAAGAAATTCAAAA  544

seq1  ATAAATTAAAATGATAACTTTGGAGATTAGGAAGCTCAGGTTTAAATTAG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAAAATGATAACTTTGGAGATTAGGAAGCTCAGGTTTAAATTAG  594

seq1  TAGGAGTTGATAACTGCTGTGAGTTTGTTTCAGAATTCAGGGATGGTGGG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTGATAACTGCTGTGAGTTTGTTTCAGAATTCAGGGATGGTGGG  644

seq1  ATTCTTATTTTACTTTATAAGATTGAAAGAGAAAATGAAGCATCTTTCAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATTTTACTTTATAAGATTGAAAGAGAAAATGAAGCATCTTTCAG  694

seq1  TGCTAAAGAACACACACACATTCATTAAAAGTATTTATTAATAAATTAAT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAGAACACACACACATTCATTAAAAGTATTTATTAATAAATTAAT  744

seq1  TTCTGTGAAATATTAAATATTTCAACTTGTCACTTTCTATTAATATGACA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAAATATTAAATATTTCAACTTGTCACTTTCTATTAATATGACA  794

seq1  GTCCACTATTCCTTTAACTTGACCTGACCCTGTTGGGCATTTGTATTCCC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTATTCCTTTAACTTGACCTGACCCTGTTGGGCATTTGTATTCCC  844

seq1  AAAGGGCAACTGACCTGGAAATGATAGTGGAGAGTTAGGAGATGCTGGGT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCAACTGACCTGGAAATGATAGTGGAGAGTTAGGAGATGCTGGGT  894

seq1  TATTATTTTCTCTATTTTATACAGTGATCAAGTAAGGCTGGATGCTGGGC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTCTCTATTTTATACAGTGATCAAGTAAGGCTGGATGCTGGGC  944

seq1  ATGCCACCTGGAAACACACTACCACCTTTGTGAGCATGTGGCATCAAACA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACCTGGAAACACACTACCACCTTTGTGAGCATGTGGCATCAAACA  994

seq1  CTGCCAAGCAAGTAGATAAGATCTCACCATGAGGCTCACAAAAGGACTTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGCAAGTAGATAAGATCTCACCATGAGGCTCACAAAAGGACTTT  1044

seq1  AAAGTCCTCGAACATAGGCAACCTCAAAAGATAAACCACTACCTGAAACT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCTCGAACATAGGCAACCTCAAAAGATAAACCACTACCTGAAACT  1094

seq1  TTCTATTTTATTGTGTTGTCTTCCCTGTGAGAGAAATATACTTGACCTAT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTTATTGTGTTGTCTTCCCTGTGAGAGAAATATACTTGACCTAT  1144

seq1  GGTTTGTTTGTGTGACTTTGGTTATTTGTAATCACAAATATTACTTGAAC  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTTGTGTGACTTTGGTTATTTGTAATCACAAATATTACTTGAAC  1194

seq1  CATGTCTTCAGAATTC  1201
      ||||||||||||||||
seq2  CATGTCTTCAGAATTC  1210


seq1: chr3_42242275_42242791
seq2: B6Ng01-273A02.g_66_582

seq1  GAATTCATTACACTCTTGAGTTGGGGGAAGTATTGAGAGCCCCGAAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACACTCTTGAGTTGGGGGAAGTATTGAGAGCCCCGAAAGGG  50

seq1  AAAGGAACTCCACAAGAAGACAAACAGAGTCAACTAACTTAGGCTCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACTCCACAAGAAGACAAACAGAGTCAACTAACTTAGGCTCTTGG  100

seq1  GAGCTCTCGGGGACTGAGCCACCAACTAAAGAGAATACTCAGGTTGGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTCGGGGACTGAGCCACCAACTAAAGAGAATACTCAGGTTGGACC  150

seq1  TAGGCCTTGAGCACATCTGTAGCTCAGTCATCATGTGGGTCCCTCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTTGAGCACATCTGTAGCTCAGTCATCATGTGGGTCCCTCAAAAA  200

seq1  CTGGAGTGGAGGCTGTTCTTAAAGCTGTAGGGTAACCATGAAAACATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTGGAGGCTGTTCTTAAAGCTGTAGGGTAACCATGAAAACATTCC  250

seq1  CTAACAGGGTTGCCTTGTCTGACCTCAGTGATTTACCAGGGTGAGGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGGGTTGCCTTGTCTGACCTCAGTGATTTACCAGGGTGAGGGGGA  300

seq1  ATACCCAGGTAGGGCTCTACCCTTTCAGAGGAGAGAGCGTGGGGAATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAGGTAGGGCTCTACCCTTTCAGAGGAGAGAGCGTGGGGAATAGG  350

seq1  GAGAGTGACCCTGTGAGTGGGACACTGAATGGTAGGTCAGGGCAGCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGACCCTGTGAGTGGGACACTGAATGGTAGGTCAGGGCAGCATTT  400

seq1  GGGATGTAAATTATAAGGAAAAATAAAAGAAAGAGAGAGAGACCGGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTAAATTATAAGGAAAAATAAAAGAAAGAGAGAGAGACCGGTCCC  450

seq1  ATGGGCAAGAACCAATCCCTGACACTATTAATGATACTCTGTTATGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAAGAACCAATCCCTGACACTATTAATGATACTCTGTTATGCTTT  500

seq1  CTGGCAGGAACCTAGCA  517
      |||||||||||||||||
seq2  CTGGCAGGAACCTAGCA  517


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