BAC Information

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BAC

Clone NameB6Ng01-273A20
Chromosome3 (Build37)
Map Location 13,531,894 - 13,693,821
singlet/doubletdoublet
Overlap gene0710005M24Rik, LOC100041679, LOC100041667
Upstream geneLOC100039798, EG668033, LOC668037, LOC100039823, LOC100039861
Downstream geneLOC100039882, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273A20.bB6Ng01-273A20.g
ACCGA074721GA074722
length1,1981,119
definitionB6Ng01-273A20.b B6Ng01-273A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,531,894 - 13,533,096)(13,692,706 - 13,693,821)
sequence
gaattcataaccacacaaataataaagaggcagagctacatttctaaggg
aagagaagacactttgtaaagatgttctcaagaaagacaagctttaaact
gagaatgtgcaggagttttgtaattagtattattagaagtcttttcagct
tcaggatagtttgttcttttcttttttctttctttctttttctttttttt
ttccttttggtaaagaacagtgagtgaaaagagaagtatgatagggtctg
ttgagatagttcagtcaataaagtgattgttatgcattgaggcttgatgg
ccagccagtctagtggaatcagaaaggttcaggttcagctctggaagtaa
tgtggaagacatataaacatgccttttggccttagatgcacacacacaca
tgagtgcgtgtaacaatgataaacaatggcaagttaaaaatgatatattc
aagaagcagtgttgtgtatttaaagcatataataaaagttcatatcttta
aatgaaattgttaataaacttttaagaaaagcaaagctagttcatctgtt
tgtatattaagtgggggatttcaagtatttattttgatacgtatgttaaa
cagcataagtatgccattttggacatatttattgttctagtagatgcaaa
ttatattttcctgaatattttaatatgaatgcaactgcggagaccaagaa
ctattggtgcccagataaacctacatgtttgtaactcctttttgctcccc
atcttgtatggtttgactctcaaatcttttcttcctctattcctgcctgg
aaattctgccttctcttttacccagcaaagggcttctcccatctttatta
gccaactaacaattagggaatcaagtagggaaactcctcctataattcac
caatgttttcagacttagttttcaagagactatctctcttgagggttcta
tgacagagagtcactatgtgctttcagacagtaggacataacactgtaga
gtagagggcccagaacagcacaggccagaaacatgtactctttctttact
gtgtgctttcacagagttaggacatacactgtagagtagagtctcagaaa
caacacaaggtcagaggacttgcctttcatgctgatgtcatgagatgact
aatgtctctgtgtcgatgttacatgtttctatttgcctgcgtgaagac

gaattcactcttgtatgcatctaaaatactgggggacttaggttgaaagt
tttgtccaaaaactctttggaatgggtttggggaaattgattgggtcatg
agttttgcttggtagttttccaataaattagtagttttctaattttatgt
ggctatttggaggtgatacaaacccagggggtatgacctacttgaagtag
gcgtgtctttaagacagtgtccagggatattttattgtttcctatctgtt
atgatgtgactagatttagtctgacttaagttgctgccacattcctaagg
tcttgagggaacaagtcaccacagacgaaaacctctaatactaaacaaaa
ataaagttttctccctttaaatttattttctcaagtcagtacagcagaag
aaagctaactgacacatgtggcccttgtttttcctgaaaatctttatgac
caccaaaaaggcacacctacgataaaggttagtaaattttgacagtttta
cacaatctataatcatttgggagactgggcactgggcatgctgtcaggtg
gtgatcttgattaaattaatttaggtgaacagacaatgcatatattatta
gtgagtggaatcttatctgtgtatgtgaagagcaggaatagtcaagcaac
accagcacttcattatggtctgccttctgattatggcaagaaatgatcga
ctgcctcactctcttgatgttgaaccttccctcttagaatcgactatacc
attgagtcatgagcatggataagccctttcttccataagtttctcccatg
ataatgctttactacaccaatggaagagacactgagacattagagatggg
aaagttactctgtaagtttctattcaatgggcatcagaagtgaattagcg
acaagtcaatgaagttagcttgagtttcatgctatgttcattactttaat
gccatcttcaccatgttattacgttatgaaagagcacaagtcattattat
ttcacacttaccgagtgtttccctgagagcatcagccttatgtcagtaag
cacaataaaaagcagtgtctgaggaattgaaccttattttggtagggaac
aaggaataagcaaaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13531894_13533096
seq2: B6Ng01-273A20.b_44_1240

seq1  GAATTCATAACCACACAAATAATAAAGAGGCAGAGCTACATTTCTAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACCACACAAATAATAAAGAGGCAGAGCTACATTTCTAAGGG  50

seq1  AAGAGAAGACACTTTGTAAAGATGTTCTCAAGAAAGACAAGCTTTAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGACACTTTGTAAAGATGTTCTCAAGAAAGACAAGCTTTAAACT  100

seq1  GAGAATGTGCAGGAGTTTTGTAATTAGTATTATTAGAAGTCTTTTCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTGCAGGAGTTTTGTAATTAGTATTATTAGAAGTCTTTTCAGCT  150

seq1  TCAGGATAGTTTGTTCTTTTCTTTTTTCTTTCTTTCTTTTTCTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAGTTTGTTCTTTTCTTTTTTCTTTCTTTCTTTTTCTTTTTTTT  200

seq1  TTCCTTTTGGTAAAGAACAGTGAGTGAAAAGAGAAGTATGATAGGGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTGGTAAAGAACAGTGAGTGAAAAGAGAAGTATGATAGGGTCTG  250

seq1  TTGAGATAGTTCAGTCAATAAAGTGATTGTTATGCATTGAGGCTTGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATAGTTCAGTCAATAAAGTGATTGTTATGCATTGAGGCTTGATGG  300

seq1  CCAGCCAGTCTAGTGGAATCAGAAAGGTTCAGGTTCAGCTCTGGAAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGTCTAGTGGAATCAGAAAGGTTCAGGTTCAGCTCTGGAAGTAA  350

seq1  TGTGGAAGACATATAAACATGCCTTTTGGCCTTAGATGCACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGACATATAAACATGCCTTTTGGCCTTAGATGCACACACACACA  400

seq1  TGAGTGCGTGTAACAATGATAAACAATGGCAAGTTAAAAATGATATATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCGTGTAACAATGATAAACAATGGCAAGTTAAAAATGATATATTC  450

seq1  AAGAAGCAGTGTTGTGTATTTAAAGCATATAATAAAAGTTCATATCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAGTGTTGTGTATTTAAAGCATATAATAAAAGTTCATATCTTTA  500

seq1  AATGAAATTGTTAATAAACTTTTAAGAAAAGCAAAGCTAGTTCATCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTGTTAATAAACTTTTAAGAAAAGCAAAGCTAGTTCATCTGTT  550

seq1  TGTATATTAAGTGGGGGATTTCAAGTATTTATTTTGATACGTATGTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTAAGTGGGGGATTTCAAGTATTTATTTTGATACGTATGTTAAA  600

seq1  CAGCATAAGTATGCCATTTTGGACATATTTATTGTTCTAGTAGATGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAAGTATGCCATTTTGGACATATTTATTGTTCTAGTAGATGCAAA  650

seq1  TTATATTTTCCTGAATATTTTAATATGAATGCAACTGCGGAGACCAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTCCTGAATATTTTAATATGAATGCAACTGCGGAGACCAAGAA  700

seq1  CTATTGGTGCCCAGATAAACCTACATGTTTGTAACTCCTTTTTGCTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGTGCCCAGATAAACCTACATGTTTGTAACTCCTTTTTGCTCCCC  750

seq1  ATCTTGTATGGTTTGACTCTCAAATCTTTTCTTCCTCTATTCCTGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTATGGTTTGACTCTCAAATCTTTTCTTCCTCTATTCCTGCCTGG  800

seq1  AAATTCTGCCTTCTCTTTTACCCAGCAAAGGGCTTCTCCCATCTTTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGCCTTCTCTTTTACCCAGCAAAGGGCTTCTCCCATCTTTATTA  850

seq1  GCCAACTAACAATTAGGGAATCAAGTAGGGAAACTCCTCCTATAATTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTAACAATTAGGGAATCAAGTAGGGAAACTCCTCCTATAATTCAC  900

seq1  CAATGTTTTCAGACTTAGTTTTCAAGAGACTATCTCCCTTGAGGGTTCTA  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAATGTTTTCAGACTTAGTTTTCAAGAGACTATCTCTCTTGAGGGTTCTA  950

seq1  TGACAAGAGAGGTCACTATGTGCTTTCAGACAGTTAGGACATAACACTGT  1000
      |||| ||||| |||||||||||||||||||||| ||||||||||||||||
seq2  TGAC-AGAGA-GTCACTATGTGCTTTCAGACAG-TAGGACATAACACTGT  997

seq1  AGAGTAGAGGGCCCAGAACAGCACAAGCCAGAAACATGTACCCTTTCTTT  1050
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  AGAGTAGAGGGCCCAGAACAGCACAGGCCAGAAACATGTACTCTTTCTTT  1047

seq1  ACTGTGTGCTTTCACAGAGTTAGGACATAACACTGTAGAGTAGAGCCCCA  1100
      |||||||||||||||||||||||||||| |||||||||||||||| | ||
seq2  ACTGTGTGCTTTCACAGAGTTAGGACAT-ACACTGTAGAGTAGAGTCTCA  1096

seq1  G-AACAACACAA-GTCAGAAGGACATGCCCTTTCTTTGCTGTTGTCTTTT  1148
      | |||||||||| ||||| ||||| || ||||||  ||||| ||||   |
seq2  GAAACAACACAAGGTCAG-AGGACTTG-CCTTTC-ATGCTGATGTC--AT  1141

seq1  GAGGATGGACTTATTGGTCTCTGTGTCGTTGTCA-GTGTTTCTA-TTGC-  1195
      || ||| |||| ||  |||||||||||| ||| |  |||||||| |||| 
seq2  GA-GAT-GACTAAT--GTCTCTGTGTCGATGTTACATGTTTCTATTTGCC  1187

seq1  --TGTGAAGA  1203
         |||||||
seq2  TGCGTGAAGA  1197


seq1: chr3_13692706_13693821
seq2: B6Ng01-273A20.g_66_1184 (reverse)

seq1  TTATTTTTTCTTAT--CTTGTT-CCTA-CAAAATA--GGTCAATTCTCAA  44
      |||||||| |||||  |||||| |||| |||||||  | |||||||   |
seq2  TTATTTTTGCTTATTCCTTGTTCCCTACCAAAATAAGGTTCAATTCCTCA  50

seq1  GACACTGC-TTTTATGTTGCTTTACTGACATAA-GCTGATGCTCTTCCAG  92
      |||||||| ||||||  ||| |||||||||||| |||||||||||  |||
seq2  GACACTGCTTTTTATTGTGC-TTACTGACATAAGGCTGATGCTCT--CAG  97

seq1  GGAAACACTCGGTAAGTGGTGAAATAATAATGACTTGTGCTCTTTCATAA  142
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  GGAAACACTCGGTAAGT-GTGAAATAATAATGACTTGTGCTCTTTCAT-A  145

seq1  ACGTAATAACATGGTGAAGATGGCATTAAAGTAATGAACATAGCATGAAA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAATAACATGGTGAAGATGGCATTAAAGTAATGAACATAGCATGAAA  195

seq1  CTCAAGCTAACTTCATTGACTTGTCGCTAATTCACTTCTGATGCCCATTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCTAACTTCATTGACTTGTCGCTAATTCACTTCTGATGCCCATTG  245

seq1  AATAGAAACTTACAGAGTAACTTTCCCATCTCTAATGTCTCAGTGTCTCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAACTTACAGAGTAACTTTCCCATCTCTAATGTCTCAGTGTCTCT  295

seq1  TCCATTGGTGTAGTAAAGCATTATCATGGGAGAAACTTATGGAAGAAAGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGTGTAGTAAAGCATTATCATGGGAGAAACTTATGGAAGAAAGG  345

seq1  GCTTATCCATGCTCATGACTCAATGGTATAGTCGATTCTAAGAGGGAAGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCCATGCTCATGACTCAATGGTATAGTCGATTCTAAGAGGGAAGG  395

seq1  TTCAACATCAAGAGAGTGAGGCAGTCGATCATTTCTTGCCATAATCAGAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCAAGAGAGTGAGGCAGTCGATCATTTCTTGCCATAATCAGAA  445

seq1  GGCAGACCATAATGAAGTGCTGGTGTTGCTTGACTATTCCTGCTCTTCAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACCATAATGAAGTGCTGGTGTTGCTTGACTATTCCTGCTCTTCAC  495

seq1  ATACACAGATAAGATTCCACTCACTAATAATATATGCATTGTCTGTTCAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGATAAGATTCCACTCACTAATAATATATGCATTGTCTGTTCAC  545

seq1  CTAAATTAATTTAATCAAGATCACCACCTGACAGCATGCCCAGTGCCCAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTAATTTAATCAAGATCACCACCTGACAGCATGCCCAGTGCCCAG  595

seq1  TCTCCCAAATGATTATAGATTGTGTAAAACTGTCAAAATTTACTAACCTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAAATGATTATAGATTGTGTAAAACTGTCAAAATTTACTAACCTT  645

seq1  TATCGTAGGTGTGCCTTTTTGGTGGTCATAAAGATTTTCAGGAAAAACAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTAGGTGTGCCTTTTTGGTGGTCATAAAGATTTTCAGGAAAAACAA  695

seq1  GGGCCACATGTGTCAGTTAGCTTTCTTCTGCTGTACTGACTTGAGAAAAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACATGTGTCAGTTAGCTTTCTTCTGCTGTACTGACTTGAGAAAAT  745

seq1  AAATTTAAAGGGAGAAAACTTTATTTTTGTTTAGTATTAGAGGTTTTCGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAGGGAGAAAACTTTATTTTTGTTTAGTATTAGAGGTTTTCGT  795

seq1  CTGTGGTGACTTGTTCCCTCAAGACCTTAGGAATGTGGCAGCAACTTAAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGACTTGTTCCCTCAAGACCTTAGGAATGTGGCAGCAACTTAAG  845

seq1  TCAGACTAAATCTAGTCACATCATAACAGATAGGAAACAATAAAATATCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTAAATCTAGTCACATCATAACAGATAGGAAACAATAAAATATCC  895

seq1  CTGGACACTGTCTTAAAGACACGCCTACTTCAAGTAGGTCATACCCCCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACTGTCTTAAAGACACGCCTACTTCAAGTAGGTCATACCCCCTG  945

seq1  GGTTTGTATCACCTCCAAATAGCCACATAAAATTAGAAAACTACTAATTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTATCACCTCCAAATAGCCACATAAAATTAGAAAACTACTAATTT  995

seq1  ATTGGAAAACTACCAAGCAAAACTCATGACCCAATCAATTTCCCCAAACC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAACTACCAAGCAAAACTCATGACCCAATCAATTTCCCCAAACC  1045

seq1  CATTCCAAAGAGTTTTTGGACAAAACTTTCAACCTAAGTCCCCCAGTATT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAAAGAGTTTTTGGACAAAACTTTCAACCTAAGTCCCCCAGTATT  1095

seq1  TTAGATGCATACAAGAGTGAATTC  1116
      ||||||||||||||||||||||||
seq2  TTAGATGCATACAAGAGTGAATTC  1119


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