This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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BAC name
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Search Result
BAC
Clone Name
B6Ng01-273J22
Chromosome
3 (Build37)
Map Location
25,692,630 - 25,826,053
singlet/doublet
doublet
Overlap gene
Nlgn1
Upstream gene
LOC100039592
,
LOC621017
Downstream gene
LOC229152
,
Spata16
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC100039592
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100039592
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 773 ESTs, 26 Proteins
name
Nlgn1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:192167
MGI:2179435
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC621017
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:621017
definition
note
: acid phosphatase 1-like
pseudo
: _no_value
name
LOC229152
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:229152
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
pseudo
: _no_value
name
Spata16
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:70862
MGI:1918112
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
LOC100039592
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149250823
GeneID:100039592
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 698 ESTs, 2 Proteins
product
: similar to nuclear pore-targeting complex component of 58 kDa, transcript variant 2
transcript_id
: XM_001473195.1
name
LOC100039592
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149250821
GeneID:100039592
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 773 ESTs, 25 Proteins
product
: similar to nuclear pore-targeting complex component of 58 kDa, transcript variant 1
transcript_id
: XM_001473171.1
name
Nlgn1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:34447216
GeneID:192167
MGI:2179435
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: neuroligin 1
transcript_id
: NM_138666.2
name
Spata16
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142375818
GeneID:70862
MGI:1918112
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: spermatogenesis associated 16
transcript_id
: NM_029150.2
name
Spata16
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:21312343
GeneID:70862
MGI:1918112
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: spermatogenesis associated 16
transcript_id
: NM_027583.1
name
LOC100039592
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149250824
GeneID:100039592
definition
codon_start
: 1
product
: similar to nuclear pore-targeting complex component of 58 kDa isoform 2
protein_id
: XP_001473245.1
name
LOC100039592
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149250822
GeneID:100039592
definition
codon_start
: 1
product
: similar to nuclear pore-targeting complex component of 58 kDa isoform 1
protein_id
: XP_001473221.1
name
Nlgn1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:34447217
CCDS:CCDS17268.1
GeneID:192167
MGI:2179435
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IMP]; GO:0016020 - membrane [Evidence IEA]; GO:0045202 - synapse [Evidence ISS] [Evidence IDA]
GO_function
: GO:0016789 - carboxylic ester hydrolase activity [Evidence IMP]; GO:0042043 - neurexin binding [Evidence IMP]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0016339 - calcium-dependent cell-cell adhesion [Evidence ISS]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0045161 - neuronal ion channel clustering [Evidence ISS]; GO:0045664 - regulation of neuron differentiation [Evidence IDA]; GO:0050808 - synapse organization and biogenesis [Evidence ISS]; GO:0016080 - synaptic vesicle targeting [Evidence IMP]; GO:0007416 - synaptogenesis [Evidence IDA]
codon_start
: 1
product
: neuroligin 1
protein_id
: NP_619607.2
name
Spata16
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:28077041
CCDS:CCDS17269.1
GeneID:70862
MGI:1918112
definition
GO_component
: GO:0005794 - Golgi apparatus [Evidence ISS]
GO_function
: GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2; spermatogenesis-related protein
product
: Nyd-sp12 protein isoform 2
protein_id
: NP_083426.1
name
Spata16
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21312344
GeneID:70862
MGI:1918112
definition
GO_component
: GO:0005794 - Golgi apparatus [Evidence ISS]
GO_function
: GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1; spermatogenesis-related protein
product
: Nyd-sp12 protein isoform 1
protein_id
: NP_081859.1
name
LOC229152
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:229152
definition
number
: 1
pseudo
: _no_value
name
LOC229152
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:229152
definition
number
: 2
pseudo
: _no_value
name
LOC229152
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:229152
definition
number
: 3
pseudo
: _no_value
name
LOC229152
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:229152
definition
number
: 4
pseudo
: _no_value
clone name
MSMg01-276F15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-273E22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-296K12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-182I20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479K14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-190G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-514C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-406H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-436L10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-491M23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-522H05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-479L06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431N24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-173B08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-358F06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-477E24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-083P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-087I02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-065F04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-449H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478E03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-486M09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-367L22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-461H01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-173K05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-052O24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-354A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-163K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-491N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-540C23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-465P17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-378H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-428O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-542K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-099E04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-400J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-317P18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-415M24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-300J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-103E04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-398L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-102B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-532F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-054B20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529M13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-261N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424J02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-501F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-516F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-393O05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191N12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-119E12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-391M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-089O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-046A16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-334D12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-472F01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-144I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-216A04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-211G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-199L24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-420F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-137F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439F08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048G03
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-123P06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-341E19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-198F10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-437E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-476D03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-415J07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-362B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-357J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-504G14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-530F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-493L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-508H19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-268K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136L24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-501J16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-072O13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066O08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-506O19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-159H24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-543L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-213E01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-375P22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-093B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-122F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397C04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-146E01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414E09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-101I08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-231D07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-268L20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-480P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535P02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-308F16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-083P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-087B17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-118C07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-350D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-538O22
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-410A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-480O17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-067O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417M08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343F19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479J09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-482L03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-233K01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404G12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461N23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-132A22
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-179D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-187N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-527J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-331D21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407B21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-322M16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-079J03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-201B13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-268K24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-264O14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-103P20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-138E03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-334L11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-254N02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-123K11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-036A05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-028H24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-127D19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-220D21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-081A07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-025I06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-018M05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-234G09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-251M15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-257I14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-117O14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-287E13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-102D16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-130I23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-012F23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-113K23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-315J12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-177I01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-008I18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-008I19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-054N12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-031J10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-108E10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-288A17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-212B20
singlet/doublet
doublet
plural/unique
unique
clone name
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doublet
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clone name
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B6Ng01-011C03
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doublet
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clone name
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doublet
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clone name
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B6Ng01-048I05
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B6Ng01-088L07
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B6Ng01-134D14
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B6Ng01-300P21
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