BAC Information

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BAC

Clone NameB6Ng01-274B14
Chromosome3 (Build37)
Map Location 42,743,527 - 42,938,223
singlet/doubletdoublet
Overlap geneLOC100039219
Upstream geneLOC666031, LOC100039204
Downstream geneLOC677788, LOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274B14.bB6Ng01-274B14.g
ACCGA075492GA075493
length1,1271,144
definitionB6Ng01-274B14.b B6Ng01-274B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,937,105 - 42,938,223)(42,743,527 - 42,744,682)
sequence
tgtgagctctagatactagtttaaactcagccacatgccctgttcaagaa
ataccttaatgtaaatgatttgctctggatagtagatcctctaattaata
ttcactcatgttttaaattcttgcctgtataaaagtacatatttcactct
tgagggaattttttcaaaatttttattatatattgtcttcatttacattt
caaatgcaatcgtgtctgggtttggtggttgtttatgggatggatcccca
tgtggggcagtatctggattattgatttgtaaaatttcatatattgtatg
agtgtgaagtgctaacttaacagataactataaatatcattaaaagcatt
ttacataattatccaaatgattaaaaataatagttgtctttttcttgggt
taatttgacaagaattctgagatttacatacaaatattgaaatttaagac
ttggacaaatagatttcaagttcgtgattacttttcaagaaaatcacggt
atgtgtgatgtgtggttcaatgatacagcttttcttgaatatatgtcgca
tccaccccaccagcaggaaagatgcaacaccactttgtccttcttcaagc
aggtttattcaggaacacttagcattgcaatgcaggaacaggaatccctc
aaacaaccctggggcgccccttaaataccctactgactcctcccaatcac
cccagtcaagtaacagcagtccataggttcacagcaagtgaagacacctc
aggcgagctgatgaggcatggcatctgcacagtgcaggcagctgggatgt
gactaagtctgagataatgaggaagtcaggcgcaggccataaagacctgg
cagctgtcccgggcgccatcttggggaggcggatgtacctgctcctcaca
aatataatacaaaaaactttccatcatgatttgagcacatttcattctca
tctccttttaaccttgtatgtttaataattattattttgatctctatttg
aaagactatcatccacttctgtttccaccatctagaactagtttataaaa
tactgtctcctttcactcaatcaactgtgatgcttaaaattttttaagct
acattttaatttcagccatcttagaac

gaattcatagatatatactttgagaaaccctgtcataaagaccataatct
ctaagagacatggacatacttcaattttcactgtctcatttgcattattt
aataggatacctaatatataggaagtgcttaataaatatttgctgagcaa
gtgaatgactgactaaaccatataaaaatagtgtccaggatggttaagag
aaaaggcaaagggaattaatatttgtgaattaatgtccaagaactgatgt
attctgtatacagtatctgtaacacctccattattaacatatcttgttcc
ttaaatatgttacaataaataagcaaaatgctttgtattttctcattgag
aagagccattaaatatttcctgtgaatgctttgaatgtgtaaatttctga
atcttagtaacacacacacacaacattcttaaattattcatttgtttata
tgtacacataatatgcagtcatatattaattttaaacattgtttttcttt
tttataatacatgaagtaattttattaattatattcatcttcaatattaa
gttaattaaaaacaatattcttgctactgtttcttctcctctactttgat
aggaatgaatcatatatgatgtaatagactataactcaaacctccggttt
gtatagtactgaagttatgaagacatactgtagacatatagtactgaaga
atgaatgacatttttttcttgtaacttttttttttggcttaaaattgtat
ccatagtaattggtctccatagtctaatgactttaagtttaacatcagat
ccccaaagtccacctccagtgacttacttcctccaacatggtcacaccac
ctaatccctctgaaatgatgcccctcaaagttgaccaattatttgcatct
atgagcctattggagccattattattcaacaacaatgacatttattatta
caaataaattaagatctctaaaagataagacatcattctactctttattt
ataggtcatatgatagaaatagtattctgagtttcaatatggttacaaac
cttagaaatataatatctatatttatatttataggccagttccatgctag
cagcataacatttccctcctgccactgcctagaatgtagaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_42937105_42938223
seq2: B6Ng01-274B14.b_52_1178 (reverse)

seq1  GTTCTTAGATGGCTGAAA-TAAAATGTAGCCTTAAAAAAATCTAAGCATC  49
      ||||| |||||||||||| |||||||||| ||||||||| | ||||||||
seq2  GTTCTAAGATGGCTGAAATTAAAATGTAG-CTTAAAAAATTTTAAGCATC  49

seq1  ACAGTTGATTGAGTG-AATGAGACAATA-TTTATAAACTAGTTCTAGAT-  96
      ||||||||||||||| || |||||| || |||||||||||||||||||| 
seq2  ACAGTTGATTGAGTGAAAGGAGACAGTATTTTATAAACTAGTTCTAGATG  99

seq1  GTTGAAACAG-AGTTGATGATAGTCTTTCAAATAGAAATCAAAATAATAA  145
      || ||||||| ||| ||||||||||||||||||||| ||||||||||| |
seq2  GTGGAAACAGAAGTGGATGATAGTCTTTCAAATAGAGATCAAAATAAT-A  148

seq1  ATTATTAAACATACAAGGT--AAAAGAGATGAGAATGAAATGTGCTCAAA  193
      |||||||||||||||||||  ||| |||||||||||||||||||||||||
seq2  ATTATTAAACATACAAGGTTAAAAGGAGATGAGAATGAAATGTGCTCAAA  198

seq1  TCATGATGGAA--GTTTTTGTATTATATTTGTGAGGAGCAGGTACATCCG  241
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  TCATGATGGAAAGTTTTTTGTATTATATTTGTGAGGAGCAGGTACATCCG  248

seq1  CCTCCCCAAGATGGCGCCCGGGACAGCTGCCAGGTC-TTATGGCCTGCGC  290
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCTCCCCAAGATGGCGCCCGGGACAGCTGCCAGGTCTTTATGGCCTGCGC  298

seq1  CTGACTTCCTCATTATCTCAGACTTAGTCACATCCCAGCTGCCTGCACTG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCCTCATTATCTCAGACTTAGTCACATCCCAGCTGCCTGCACTG  348

seq1  TGCAGATGCCATGCCTCATCAGCTCGCCTGAGGTGTCTTCACTTGCTGTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGCCATGCCTCATCAGCTCGCCTGAGGTGTCTTCACTTGCTGTG  398

seq1  AACCTATGGACTGCTGTTACTTGACTGGGGTGATTGGGAGGAGTCAGTAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATGGACTGCTGTTACTTGACTGGGGTGATTGGGAGGAGTCAGTAG  448

seq1  GGTATTTAAGGGGCGCCCCAGGGTTGTTTGAGGGATTCCTGTTCCTGCAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTAAGGGGCGCCCCAGGGTTGTTTGAGGGATTCCTGTTCCTGCAT  498

seq1  TGCAATGCTAAGTGTTCCTGAATAAACCTGCTTGAAGAAGGACAAAGTGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGCTAAGTGTTCCTGAATAAACCTGCTTGAAGAAGGACAAAGTGG  548

seq1  TGTTGCATCTTTCCTGCTGGTGGGGTGGATGCGACATATATTCAAGAAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCATCTTTCCTGCTGGTGGGGTGGATGCGACATATATTCAAGAAAA  598

seq1  GCTGTATCATTGAACCACACATCACACATACCGTGATTTTCTTGAAAAGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATCATTGAACCACACATCACACATACCGTGATTTTCTTGAAAAGT  648

seq1  AATCACGAACTTGAAATCTATTTGTCCAAGTCTTAAATTTCAATATTTGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGAACTTGAAATCTATTTGTCCAAGTCTTAAATTTCAATATTTGT  698

seq1  ATGTAAATCTCAGAATTCTTGTCAAATTAACCCAAGAAAAAGACAACTAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATCTCAGAATTCTTGTCAAATTAACCCAAGAAAAAGACAACTAT  748

seq1  TATTTTTAATCATTTGGATAATTATGTAAAATGCTTTTAATGATATTTAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAATCATTTGGATAATTATGTAAAATGCTTTTAATGATATTTAT  798

seq1  AGTTATCTGTTAAGTTAGCACTTCACACTCATACAATATATGAAATTTTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTGTTAAGTTAGCACTTCACACTCATACAATATATGAAATTTTA  848

seq1  CAAATCAATAATCCAGATACTGCCCCACATGGGGATCCATCCCATAAACA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAATAATCCAGATACTGCCCCACATGGGGATCCATCCCATAAACA  898

seq1  ACCACCAAACCCAGACACGATTGCATTTGAAATGTAAATGAAGACAATAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAAACCCAGACACGATTGCATTTGAAATGTAAATGAAGACAATAT  948

seq1  ATAATAAAAATTTTGAAAAAATTCCCTCAAGAGTGAAATATGTACTTTTA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAAATTTTGAAAAAATTCCCTCAAGAGTGAAATATGTACTTTTA  998

seq1  TACAGGCAAGAATTTAAAACATGAGTGAATATTAATTAGAGGATCTACTA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCAAGAATTTAAAACATGAGTGAATATTAATTAGAGGATCTACTA  1048

seq1  TCCAGAGCAAATCATTTACATTAAGGTATTTCTTGAACAGGGCATGTGGC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCAAATCATTTACATTAAGGTATTTCTTGAACAGGGCATGTGGC  1098

seq1  TGAGTTTAAACTAGTATCTAGAGCTCACA  1119
      |||||||||||||||||||||||||||||
seq2  TGAGTTTAAACTAGTATCTAGAGCTCACA  1127


seq1: chr3_42743527_42744682
seq2: B6Ng01-274B14.g_64_1207

seq1  GAATTCATAGATATATACTTTGAGAAACCCTGTCATAAAGACCATAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGATATATACTTTGAGAAACCCTGTCATAAAGACCATAATCT  50

seq1  CTAAGAGACATGGACATACTTCAATTTTCACTGTCTCATTTGCATTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGACATGGACATACTTCAATTTTCACTGTCTCATTTGCATTATTT  100

seq1  AATAGGATACCTAATATATAGGAAGTGCTTAATAAATATTTGCTGAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATACCTAATATATAGGAAGTGCTTAATAAATATTTGCTGAGCAA  150

seq1  GTGAATGACTGACTAAACCATATAAAAATAGTGTCCAGGATGGTTAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGACTGACTAAACCATATAAAAATAGTGTCCAGGATGGTTAAGAG  200

seq1  AAAAGGCAAAGGGAATTAATATTTGTGAATTAATGTCCAAGAACTGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAAAGGGAATTAATATTTGTGAATTAATGTCCAAGAACTGATGT  250

seq1  ATTCTGTATACAGTATCTGTAACACCTCCATTATTAACATATCTTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTATACAGTATCTGTAACACCTCCATTATTAACATATCTTGTTCC  300

seq1  TTAAATATGTTACAATAAATAAGCAAAATGCTTTGTATTTTCTCATTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGTTACAATAAATAAGCAAAATGCTTTGTATTTTCTCATTGAG  350

seq1  AAGAGCCATTAAATATTTCCTGTGAATGCTTTGAATGTGTAAATTTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCATTAAATATTTCCTGTGAATGCTTTGAATGTGTAAATTTCTGA  400

seq1  ATCTTAGTAACACACACACACAACATTCTTAAATTATTCATTTGTTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGTAACACACACACACAACATTCTTAAATTATTCATTTGTTTATA  450

seq1  TGTACACATAATATGCAGTCATATATTAATTTTAAACATTGTTTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACATAATATGCAGTCATATATTAATTTTAAACATTGTTTTTCTTT  500

seq1  TTTATAATACATGAAGTAATTTTATTAATTATATTCATCTTCAATATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATACATGAAGTAATTTTATTAATTATATTCATCTTCAATATTAA  550

seq1  GTTAATTAAAAACAATATTCTTGCTACTGTTTCTTCTCCTCTACTTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTAAAAACAATATTCTTGCTACTGTTTCTTCTCCTCTACTTTGAT  600

seq1  AGGAATGAATCATATATGATGTAATAGACTATAACTCAAACCTCCGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAATCATATATGATGTAATAGACTATAACTCAAACCTCCGGTTT  650

seq1  GTATAGTACTGAAGTTATGAAGACATACTGTAGACATATAGTACTGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTACTGAAGTTATGAAGACATACTGTAGACATATAGTACTGAAGA  700

seq1  ATGAATGACATTTTTTTCTTGTAAC-TTTTTTTTTGGCTTAAAATTGTAT  749
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGAATGACATTTTTTTCTTGTAACTTTTTTTTTTGGCTTAAAATTGTAT  750

seq1  CCATAGTAATTGGTCTCCATAGTCTAATGACTTTAAGTTTAACATCAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTAATTGGTCTCCATAGTCTAATGACTTTAAGTTTAACATCAGAT  800

seq1  CCCCAAAGTCCACCTCCAGTGACTTACTTCCTCCAACATGGTCACACCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGTCCACCTCCAGTGACTTACTTCCTCCAACATGGTCACACCAC  850

seq1  CTAATCCCTCTGAAATGATGCCCCTCAAAGTTGACCAATTATTTGCATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCCTCTGAAATGATGCCCCTCAAAGTTGACCAATTATTTGCATCT  900

seq1  ATGAGCCTATTGGAGCCATTATTATTCAAACAACAATGACATTTATTATT  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGAGCCTATTGGAGCCATTATTATTC-AACAACAATGACATTTATTATT  949

seq1  ACAAAATAAATTAAGATCTCTAAAAGATAAAGACAATCATTCTACTCTTT  999
      || ||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  AC-AAATAAATTAAGATCTCTAAAAGAT-AAGAC-ATCATTCTACTCTTT  996

seq1  ATTTATAGGTCATATTGATAGAAATAAGTATTCTGAGGTTTCAATATGG-  1048
      |||||||||||||| |||||||||| |||||||||| |||||||||||| 
seq2  ATTTATAGGTCATA-TGATAGAAAT-AGTATTCTGA-GTTTCAATATGGT  1043

seq1  TACAAACTTTAG-AATATAATTTATCTATAATTTATATTTATAAGGCAAT  1097
      ||||||| |||| |||||||  ||||||| ||||||||||||| | || |
seq2  TACAAACCTTAGAAATATAA--TATCTAT-ATTTATATTTATAGGCCAGT  1090

seq1  TTCATGCTTAAGCCAAGCATAACATTTCTCTCTGCCCACTGCCTAGGTAT  1147
      | ||||||  |||  ||||||||||||| |||   |||||||||| | ||
seq2  TCCATGCT--AGC--AGCATAACATTTCCCTCCTGCCACTGCCTA-GAAT  1135

seq1  GTAGAATTC  1156
      |||||||||
seq2  GTAGAATTC  1144


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