BAC Information

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BAC

Clone NameB6Ng01-274J13
Chromosome3 (Build37)
Map Location 117,412,538 - 117,507,825
singlet/doubletdoublet
Overlap geneEG668759, Snx7
Upstream geneSlc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik
Downstream geneLOC100043260, Dpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274J13.bB6Ng01-274J13.g
ACCGA075856GA075857
length1,1781,009
definitionB6Ng01-274J13.b B6Ng01-274J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,412,538 - 117,413,715)(117,506,829 - 117,507,825)
sequence
gaattccttcctctgaatactgctgactcattccatcctgttgtcattaa
ggccaaagtgctagatgctgtctttttttaacattacagagcaagattct
taagaaaacttgcatgtatatgttctcatacacactccagagaatatttg
cttgtgttctagtaccccaactgggttttaagtacaagactataagtgaa
accaagactaattgtaaaatccaagtgactgatggtatttggtaagattt
ttataaacacagccataggtacatctttgttaaaggctggagaatctggg
gtaaatacaatagcaactttaactgttcatttctacctcacctgtgctac
agcccagagtcaacaaaaatctaccctatagtattcaagtgtgaactgga
tttcaactgcattttgaggtggaccttcatggcatttccccactttccta
gaaagaacaaacatgttcctaggtgaaatggagttattggtcttcccagg
aagaattctctcctaggaagattcacagttcctcagtagtgactcttctg
gccagtatttgtcacataataataactaatgcttaagcaatctaatagaa
aagatgctattttcttttccctcattttaagaaacatgatatgggaagta
agccatacatgtgagaactgtgtctccagtccctgctactctgtgcttta
ctgcccttggcttggattcaagaatgcaccaagaccatccctgccttcac
acttgctgtgtcccttgtccaaacagaccactcttaaaacagtgttttat
cactgggtttaattcaagtgtaactcttgagaaaggtcttctcacatcca
tttctataacagtttttatatttgttgaaaggataaacaggttcaatatt
caagtatttttaatagcatctaatattaaaccaagaataactgtcaaaga
actccctttttagtaactgggaaatattttataaaatataaacaaatacc
acataggcatattcttgaagagataccacaaagatagaagaatattgaaa
aattaatattggaaagaaaagaaggcacaccaaaaaaaaagactactatt
tggatccaattaaaatgtagccatttcagtagtactatcagaaagcctcc
tatctaattcagttggaattctattgtt
gaattccaaatgattacagctagcagagcctgctacttgttagtgcccaa
tagaccaggacactggaagggttttttttttttttttttttttttttttg
gcctcacgggtctaacacattctattttcttaaatttgttaacttttgtt
agacttccatattctgtcagaattcagacagatagacgactcaaaatacc
tagtctttgtaacaaagcaaggaacagggggctgggatcgaagctcagtt
tgtacagtgcttgccccataaagccccgcattagatcctctgaacctagg
tgtgaggatacagattgtgaaggccgtgggaggatcacgagttcaagggc
atcctctgctttgaattgagtttgaggccggcaaaaacaacgtgaagact
tagtctcaagaagcaagtgaggaattccaaatccactgagcatcttagga
gaagagcatctcattaggctctgctttcatggagcattaccgtgatgcag
tgcataccattctttgacttgcctgtcttgtgcttcttcttaagcaatgt
tcttttgaaattaaagtcacaagaagatgattcattgtgcagaaatattc
tcactttccccttttccaactgaaataatgaactcatcaagaataacaac
aacagcagcaaactgcagcaaggaaaacatcaagaattgatcatagttat
tcaaagtatatgtgtcatcttccatactggtcatgacagagtgagaaata
gcactggtgactgaagtaagacccgggcattgacagaagaaccacacagt
ggccagagaccaaagtagcagaagaggaccgggatgctccgtgtctcctg
tagcagtcaatactaatggtggtgatattcttggtaatgatggtcaggac
caaccatcctattattgcaattgttagacacccatgtgagtcagtgtttt
ggcatttcatggtgggttttttttgatctccctatggaaagggaatgcta
tttattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117412538_117413715
seq2: B6Ng01-274J13.b_41_1218

seq1  GAATTCCTTCCTCTGAATACTGCTGACTCATTCCATCCTGTTGTCATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTCTGAATACTGCTGACTCATTCCATCCTGTTGTCATTAA  50

seq1  GGCCAAAGTGCTAGATGCTGTCTTTTTTTAACATTACAGAGCAAGATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAGTGCTAGATGCTGTCTTTTTTTAACATTACAGAGCAAGATTCT  100

seq1  TAAGAAAACTTGCATGTATATGTTCTCATACACACTCCAGAGAATATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAACTTGCATGTATATGTTCTCATACACACTCCAGAGAATATTTG  150

seq1  CTTGTGTTCTAGTACCCCAACTGGGTTTTAAGTACAAGACTATAAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTCTAGTACCCCAACTGGGTTTTAAGTACAAGACTATAAGTGAA  200

seq1  ACCAAGACTAATTGTAAAATCCAAGTGACTGATGGTATTTGGTAAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGACTAATTGTAAAATCCAAGTGACTGATGGTATTTGGTAAGATTT  250

seq1  TTATAAACACAGCCATAGGTACATCTTTGTTAAAGGCTGGAGAATCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACACAGCCATAGGTACATCTTTGTTAAAGGCTGGAGAATCTGGG  300

seq1  GTAAATACAATAGCAACTTTAACTGTTCATTTCTACCTCACCTGTGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATACAATAGCAACTTTAACTGTTCATTTCTACCTCACCTGTGCTAC  350

seq1  AGCCCAGAGTCAACAAAAATCTACCCTATAGTATTCAAGTGTGAACTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGAGTCAACAAAAATCTACCCTATAGTATTCAAGTGTGAACTGGA  400

seq1  TTTCAACTGCATTTTGAGGTGGACCTTCATGGCATTTCCCCACTTTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTGCATTTTGAGGTGGACCTTCATGGCATTTCCCCACTTTCCTA  450

seq1  GAAAGAACAAACATGTTCCTAGGTGAAATGGAGTTATTGGTCTTCCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACAAACATGTTCCTAGGTGAAATGGAGTTATTGGTCTTCCCAGG  500

seq1  AAGAATTCTCTCCTAGGAAGATTCACAGTTCCTCAGTAGTGACTCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCTCTCCTAGGAAGATTCACAGTTCCTCAGTAGTGACTCTTCTG  550

seq1  GCCAGTATTTGTCACATAATAATAACTAATGCTTAAGCAATCTAATAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTATTTGTCACATAATAATAACTAATGCTTAAGCAATCTAATAGAA  600

seq1  AAGATGCTATTTTCTTTTCCCTCATTTTAAGAAACATGATATGGGAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTATTTTCTTTTCCCTCATTTTAAGAAACATGATATGGGAAGTA  650

seq1  AGCCATACATGTGAGAACTGTGTCTCCAGTCCCTGCTACTCTGTGCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATACATGTGAGAACTGTGTCTCCAGTCCCTGCTACTCTGTGCTTTA  700

seq1  CTGCCCTTGGCTTGGATTCAAGAATGCACCAAGACCATCCCTGCCTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTGGCTTGGATTCAAGAATGCACCAAGACCATCCCTGCCTTCAC  750

seq1  ACTTGCTGTGTCCCTTGTCCAAACAGACCACTCTTAAAACAGTGTTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGTGTCCCTTGTCCAAACAGACCACTCTTAAAACAGTGTTTTAT  800

seq1  CACTGGGTTTAATTCAAGTGTAACTCTTGAGAAAGGTCTTCTCACATCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTTTAATTCAAGTGTAACTCTTGAGAAAGGTCTTCTCACATCCA  850

seq1  TTTCTATAACAGTTTTTATATTTGTTGAAAGGATAAACAGGTTCAATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATAACAGTTTTTATATTTGTTGAAAGGATAAACAGGTTCAATATT  900

seq1  CAAGTATTTTTAATAGCATCTAATATTAAACCAAGAATAACTGTCAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTTTTAATAGCATCTAATATTAAACCAAGAATAACTGTCAAAGA  950

seq1  ACTCCCTTTTTAGTAACT-GGAAATATTTTATAAAATATAAACAAATA-C  998
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  ACTCCCTTTTTAGTAACTGGGAAATATTTTATAAAATATAAACAAATACC  1000

seq1  ACATAGGCATA-TCTTGAAGAGATACCACAAAAGATAG-AGAATATTGGA  1046
      ||||||||||| ||||||||||||||||| |||||||| ||||||||| |
seq2  ACATAGGCATATTCTTGAAGAGATACCAC-AAAGATAGAAGAATATTGAA  1049

seq1  AAATTAATATTGGAAAGAAAAGAAGGGCACAC--AAAAAAAAGACTACTA  1094
      |||||||||||||||||||||||| |||||||  ||||||||||||||||
seq2  AAATTAATATTGGAAAGAAAAGAA-GGCACACCAAAAAAAAAGACTACTA  1098

seq1  TTTTGATCCAAATTAAAATGTAGCCAATTTTCAGTAGTAACTATTCAGGA  1144
      ||| ||||| ||||||||||||||||  |||||||||| |||| |||| |
seq2  TTTGGATCC-AATTAAAATGTAGCCA--TTTCAGTAGT-ACTA-TCAGAA  1143

seq1  AGCCTTCTTATCTAATTCAGTGGGA--TCTATTGTT  1178
      |||| || ||||||||||||| |||  |||||||||
seq2  AGCC-TCCTATCTAATTCAGTTGGAATTCTATTGTT  1178

seq1: chr3_117506829_117507825
seq2: B6Ng01-274J13.g_67_1075 (reverse)

seq1  AAAAAT-AATAGCATTCC--TTTCATAGAGA-TTCAAAAAAAACC--ACA  44
      |||||| |||||||||||  || ||||| ||  ||||||||||||   ||
seq2  AAAAATAAATAGCATTCCCTTTCCATAGGGAGATCAAAAAAAACCCACCA  50

seq1  TGAAATG-CAAAACACTGACTCACAT-AGTGTCTAACAATTTGCATATTA  92
      ||||||| ||||||||||||||||||  |||||||||||||   ||| ||
seq2  TGAAATGCCAAAACACTGACTCACATGGGTGTCTAACAATTGCAATAATA  100

seq1  -GAT-GTTGGTCCTTGACCATCATTACCAAGAATATCA-CACCATTAGTA  139
       ||| |||||||| |||||||||||||||||||||||| |||||||||||
seq2  GGATGGTTGGTCC-TGACCATCATTACCAAGAATATCACCACCATTAGTA  149

seq1  TTGACTGCTACAGGAGACACGGAGCAT-CCGGTCCTCTTCTGCTACTTTG  188
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTGACTGCTACAGGAGACACGGAGCATCCCGGTCCTCTTCTGCTACTTTG  199

seq1  GTCTCTGG-CACTGTGTGGTTCTTCTGTCAATGCCCGGGTCTTACTTCAG  237
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGCCACTGTGTGGTTCTTCTGTCAATGCCCGGGTCTTACTTCAG  249

seq1  TCACCAGTGCTATTTCTCACTCTGTCATGACCAGTATGGAAGATGACACA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGTGCTATTTCTCACTCTGTCATGACCAGTATGGAAGATGACACA  299

seq1  TATACTTTGAATAACTATGATCAATTCTTGATGTTTTCCTTGCTGCAGTT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTGAATAACTATGATCAATTCTTGATGTTTTCCTTGCTGCAGTT  349

seq1  TGCTGCTGTTGTTGTTATTCTTGATGAGTTCATTATTTCAGTTGGAAAAG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGTTGTTGTTATTCTTGATGAGTTCATTATTTCAGTTGGAAAAG  399

seq1  GGGAAAGTGAGAATATTTCTGCACAATGAATCATCTTCTTGTGACTTTAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTGAGAATATTTCTGCACAATGAATCATCTTCTTGTGACTTTAA  449

seq1  TTTCAAAAGAACATTGCTTAAGAAGAAGCACAAGACAGGCAAGTCAAAGA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAGAACATTGCTTAAGAAGAAGCACAAGACAGGCAAGTCAAAGA  499

seq1  ATGGTATGCACTGCATCACGGTAATGCTCCATGAAAGCAGAGCCTAATGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATGCACTGCATCACGGTAATGCTCCATGAAAGCAGAGCCTAATGA  549

seq1  GATGCTCTTCTCCTAAGATGCTCAGTGGATTTGGAATTCCTCACTTGCTT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTTCTCCTAAGATGCTCAGTGGATTTGGAATTCCTCACTTGCTT  599

seq1  CTTGAGACTAAGTCTTCACGTTGTCTTTGCCGGCCTCAAACTCAATTCAA  637
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTGAGACTAAGTCTTCACGTTGTTTTTGCCGGCCTCAAACTCAATTCAA  649

seq1  AGCAGAGGATGCCCTTGAACTCGTGATCCTCCCACGGCCTTCACAATCTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGATGCCCTTGAACTCGTGATCCTCCCACGGCCTTCACAATCTG  699

seq1  TATCCTCACACCTAGGTTCAGAGGATCTAATGCGGGGCTTTATGGGGCAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCACACCTAGGTTCAGAGGATCTAATGCGGGGCTTTATGGGGCAA  749

seq1  GCACTGTACAAACTGAGCTTCGATCCCAGCCCCCTGTTCCTTGCTTTGTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTACAAACTGAGCTTCGATCCCAGCCCCCTGTTCCTTGCTTTGTT  799

seq1  ACAAAGACTAGGTATTCTGAGTCGTCTATCTGTCTGAATTCTGACAGAAT  837
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAAAGACTAGGTATTTTGAGTCGTCTATCTGTCTGAATTCTGACAGAAT  849

seq1  ATGGAAGTCTAACAAAAGTTAACAAATTTAAGAAAATAGAATGTGTTAGA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTCTAACAAAAGTTAACAAATTTAAGAAAATAGAATGTGTTAGA  899

seq1  CCCGTGAGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTCCAGTG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGAGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTCCAGTG  949

seq1  TCCTGGTCTATTGGGCACTAACAAGTAGCAGGCTCTGCTAGCTGTAATCA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTCTATTGGGCACTAACAAGTAGCAGGCTCTGCTAGCTGTAATCA  999

seq1  TTTGGAATTC  997
      ||||||||||
seq2  TTTGGAATTC  1009