BAC Information

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BAC

Clone NameB6Ng01-275B14
Chromosome3 (Build37)
Map Location 140,143,565 - 140,257,502
singlet/doubletdoublet
Overlap genenone
Upstream geneB930007M17Rik, LOC100039840, LOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2, Unc5c, LOC100039923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275B14.bB6Ng01-275B14.g
ACCGA076227GA076228
length1,1561,134
definitionB6Ng01-275B14.b B6Ng01-275B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,143,565 - 140,144,737)(140,256,345 - 140,257,502)
sequence
gaattccatgggtcataaacaaagttcctagaattcaagtgaggttataa
atatttgtaattggagttaacaaattattcagaaattcactagcttaaag
tcacaaaatttattttaacatttattttacaatggcttctctgtgctaaa
agttcagttcaactttaatgggtctccatatacctgtgattgaagtactg
aaaagagtggaattttcaagaaaatgtcaccatggaaagccatgttttca
acttcagaaaagtcattgttggtgcatgtggtggtaagtttcaatgggtg
acttgagatgtagagtcaccagagagagaggtcccttggaacacctgttg
gagattgttgcttaggttacttgaaataggaagactaacccactttcacc
agttccacctcatagactagggtggaggactgcaaactttaaatagtaag
gtggtcacagacatccattgctctctgcttcataatcaatgcaattcaac
catctgcctgaagagcctgttgttgtgactgccctgtacttggaacagtg
agataaaatacaactgtcctctctaggtggctttcccatggtattttatt
aagtgagaaaaggaactcagcaataggaaaagagatggagacactgtctc
actgacatgtgggctgttaggagcagcatggtttggcttttgcctagaga
cggcctaaacttatcttttcatatcagcttcttctgtatcacaacgtttt
tcttgaaggccattaagaggcagtgctgcctgtctaggaaaaattgtgca
gtgacatttttttctgtgttattataattggactgacaatctctgatgca
ttcagttagaagagaatcaatgtatgaagcctgaaagggacacaaaaaca
aagttaaggcaactcagaatattatagaacctgtttcctatattcatgtt
cccaaactctctacttagagatttattaagtattattttatactccattt
agtgaaattaaataagatggctcatatttatttatttatttatttatatt
atttgttatttcatgctatttatttatttacattcaatgctatcccctcc
agttccctccacatccctccctgccttatgagggtgtctcagatatcatc
caccca

gaattcaacacaatcccattggacagagattaaaaggaaaatattggaaa
aaaattcttggcttactttgaatagttttacactattttctcatatttac
agtttttaattagaaaaatagattttattagaaagcaaacaatctcaaga
aaggaatttattgaaactgtgttaaggtaaagatagagagatactagaaa
ttgatccaaaagcctggtactgtttttattatttaaggaactagaataaa
tggacttaaaatgtaaaatgatagttttatataaggtagtagaattatag
agttaatttcttcatagtctccaaagtgcactgtataagtcagggttctc
tagtgttggagaatttacagaatttctctatgtattaggggaaattattt
gaatgacttagaggctgcagtctaatttatccaacaatttgcaactgtga
atgggaagtccaagaatctagaaattgctcagtcccatgagggtagttgt
ttcagctgatttcagtataaactggaattctgaggaagtaggtaccaaaa
aacgtgctggccaacaactgcaaatgaagaagattaagacttccttcttc
cattgtccttgtaataagcctccagcagaaggtatggcccaaattaaagg
catatactaccatccctggacctaagatcttctttacttggaacttgcac
tgtccaagcctggccttgaactcagaaatcggcttgagtctgtgttttgg
aataaaagatatgcattaacttgcctgggccaaagattttcatgactact
atggttccatatctggatcaaaaacctgtgacttccagactcaagatctg
gatgacagttgtcccctccatttcaggattgtaattcattccagatatag
tcaagctgaaaattgagaataaccgacagatacatacctaaagtttcacc
agactctgattttcagaaaaaaaattcagtgagctcagcatgtaaaggat
ttgaagatagatatgatatatttttgattttaaatctgagtaatagatat
taaaatgaaagtaaagatgtatagaatattgtatgtgacatagatacact
accatatctcgttactactgagaagatggatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140143565_140144737
seq2: B6Ng01-275B14.b_44_1199

seq1  GAATTCCATGGGTCATAAACAAAGTTCCTAGAATTCAAGTGAGGTTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGGTCATAAACAAAGTTCCTAGAATTCAAGTGAGGTTATAA  50

seq1  ATATTTGTAATTGGAGTTAACAAATTATTCAGAAATTCACTAGCTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTAATTGGAGTTAACAAATTATTCAGAAATTCACTAGCTTAAAG  100

seq1  TCACAAAATTTATTTTAACATTTATTTTACAATGGCTTCTCTGTGCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAATTTATTTTAACATTTATTTTACAATGGCTTCTCTGTGCTAAA  150

seq1  AGTTCAGTTCAACTTTAATGGGTCTCCATATACCTGTGATTGAAGTACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTTCAACTTTAATGGGTCTCCATATACCTGTGATTGAAGTACTG  200

seq1  AAAAGAGTGGAATTTTCAAGAAAATGTCACCATGGAAAGCCATGTTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTGGAATTTTCAAGAAAATGTCACCATGGAAAGCCATGTTTTCA  250

seq1  ACTTCAGAAAAGTCATTGTTGGTGCATGTGGTGGTAAGTTTCAATGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGAAAAGTCATTGTTGGTGCATGTGGTGGTAAGTTTCAATGGGTG  300

seq1  ACTTGAGATGTAGAGTCACCAGAGAGAGAGGTCCCTTGGAACACCTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGATGTAGAGTCACCAGAGAGAGAGGTCCCTTGGAACACCTGTTG  350

seq1  GAGATTGTTGCTTAGGTTACTTGAAATAGGAAGACTAACCCACTTTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGTTGCTTAGGTTACTTGAAATAGGAAGACTAACCCACTTTCACC  400

seq1  AGTTCCACCTCATAGACTAGGGTGGAGGACTGCAAACTTTAAATAGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACCTCATAGACTAGGGTGGAGGACTGCAAACTTTAAATAGTAAG  450

seq1  GTGGTCACAGACATCCATTGCTCTCTGCTTCATAATCAATGCAATTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCACAGACATCCATTGCTCTCTGCTTCATAATCAATGCAATTCAAC  500

seq1  CATCTGCCTGAAGAGCCTGTTGTTGTGACTGCCCTGTACTTGGAACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCTGAAGAGCCTGTTGTTGTGACTGCCCTGTACTTGGAACAGTG  550

seq1  AGATAAAATACAACTGTCCTCTCTAGGTGGCTTTCCCATGGTATTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAATACAACTGTCCTCTCTAGGTGGCTTTCCCATGGTATTTTATT  600

seq1  AAGTGAGAAAAGGAACTCAGCAATAGGAAAAGAGATGGAGACACTGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGAAAAGGAACTCAGCAATAGGAAAAGAGATGGAGACACTGTCTC  650

seq1  ACTGACATGTGGGCTGTTAGGAGCAGCATGGTTTGGCTTTTGCCTAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATGTGGGCTGTTAGGAGCAGCATGGTTTGGCTTTTGCCTAGAGA  700

seq1  CGGCCTAAACTTATCTTTTCATATCAGCTTCTTCTGTATCACAACGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTAAACTTATCTTTTCATATCAGCTTCTTCTGTATCACAACGTTTT  750

seq1  TCTTGAAGGCCATTAAGAGGCAGTGCTGCCTGTCTAGGAAAAATTGTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGGCCATTAAGAGGCAGTGCTGCCTGTCTAGGAAAAATTGTGCA  800

seq1  GTGACATTTTTTTCTGTGTTATTATAATTGGACTGACAATCTCTGATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTTTTTTCTGTGTTATTATAATTGGACTGACAATCTCTGATGCA  850

seq1  TTCAGTTAGAAGAGAATCAATGTATGAAGCCTGAAAGGGACACAAAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTAGAAGAGAATCAATGTATGAAGCCTGAAAGGGACACAAAAACA  900

seq1  AAGTTAAGGCAACTCAGAATATTATAGAACCTGTTTCCTATATTCATGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGGCAACTCAGAATATTATAGAACCTGTTTCCTATATTCATGTT  950

seq1  -CCAAACTCTCTACTTAGAGATTTATTAAGTATATTTTTATACTCCATTT  999
       ||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  CCCAAACTCTCTACTTAGAGATTTATTAAGTATTATTTTATACTCCATTT  1000

seq1  AGTGAAATTAAATAAGAATGGCTCATATTTATTTATTTATTTATTTATTA  1049
      |||||||||||||||| |||||||||||||||||||||||||||||||  
seq2  AGTGAAATTAAATAAG-ATGGCTCATATTTATTTATTTATTTATTTAT--  1047

seq1  TTTATTTTGTTTATTTTCTATTGCTTATTTTATTTATTTACATTTCAAAT  1099
       ||||||   |||||   |  ||||   ||||||||||||||||   |||
seq2  ATTATTT--GTTATT---TCATGCT--ATTTATTTATTTACATT--CAAT  1088

seq1  GCTATCCCCCTTCCCAGGTTCCCCTCCACAATTCCCTCCCCCTGCCTCTA  1149
      |||||||||    ||||  | |||||||||  |||||  |||||||| ||
seq2  GCTATCCCC---TCCAG--TTCCCTCCACA--TCCCT--CCCTGCCT-TA  1128

seq1  TGAGGGTG-CTC---CACTATCCACCCA  1173
      |||||||| |||    |  |||||||||
seq2  TGAGGGTGTCTCAGATATCATCCACCCA  1156


seq1: chr3_140256345_140257502
seq2: B6Ng01-275B14.g_54_1187 (reverse)

seq1  AACATCCATCTTTTCTTCATGTAGTTATAACGAGATTTATGTGTAGTTGT  50
      |||||||||||| ||       |||  ||||||||  |||| |||| |||
seq2  AACATCCATCTTCTC-------AGTAGTAACGAGA--TATG-GTAG-TGT  39

seq1  ATCTTTATTAAATCACATAC-ATA-TCTATACATCTTTTACTTTTCATTT  98
      |||     ||  |||||||| ||| |||||||||| ||||| ||||||||
seq2  ATC-----TATGTCACATACAATATTCTATACATC-TTTAC-TTTCATTT  82

seq1  TAATATCTATTACTCAGATTTTAAAAATCCAAAAATATATTCATATCTAT  148
      |||||||||||||||||||||  ||||| |||||||||| ||||||||||
seq2  TAATATCTATTACTCAGATTT--AAAAT-CAAAAATATA-TCATATCTAT  128

seq1  CTTCAAATCCTTTACATGCCTGGAGCTCACTGAATTTTTTTTTTCTGAAA  198
      |||||||||||||||||||   ||||||||||||  ||||||||||| ||
seq2  CTTCAAATCCTTTACATGC--TGAGCTCACTGAA--TTTTTTTTCTG-AA  173

seq1  AATCAGAGTCTTGGTGAAACTTTAGGTATGTATCTGTCGGTTATTCTCAA  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGTC-TGGTGAAACTTTAGGTATGTATCTGTCGGTTATTCTCAA  222

seq1  TTTTCAGCTTGACTATATCTGGAATGAATTACAATCCTGAAATGGAGGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCTTGACTATATCTGGAATGAATTACAATCCTGAAATGGAGGGG  272

seq1  ACAACTGTCATCCAGATCTTGAGTCTGGAAGTCACAGGTTTTTGATCCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTCATCCAGATCTTGAGTCTGGAAGTCACAGGTTTTTGATCCAG  322

seq1  ATATGGAACCATAGTAGTCATGAAAATCTTTGGCCCAGGCAAGTTAATGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAACCATAGTAGTCATGAAAATCTTTGGCCCAGGCAAGTTAATGC  372

seq1  ATATCTTTTATTCCAAAACACAGACTCAAGCCGATTTCTGAGTTCAAGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTATTCCAAAACACAGACTCAAGCCGATTTCTGAGTTCAAGGC  422

seq1  CAGGCTTGGACAGTGCAAGTTCCAAGTAAAGAAGATCTTAGGTCCAGGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGGACAGTGCAAGTTCCAAGTAAAGAAGATCTTAGGTCCAGGGA  472

seq1  TGGTAGTATATGCCTTTAATTTGGGCCATACCTTCTGCTGGAGGCTTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTATATGCCTTTAATTTGGGCCATACCTTCTGCTGGAGGCTTATT  522

seq1  ACAAGGACAATGGAAGAAGGAAGTCTTAATCTTCTTCATTTGCAGTTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGACAATGGAAGAAGGAAGTCTTAATCTTCTTCATTTGCAGTTGTT  572

seq1  GGCCAGCACGTTTTTTGGTACCTACTTCCTCAGAATTCCAGTTTATACTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCACGTTTTTTGGTACCTACTTCCTCAGAATTCCAGTTTATACTG  622

seq1  AAATCAGCTGAAACAACTACCCTCATGGGACTGAGCAATTTCTAGATTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCTGAAACAACTACCCTCATGGGACTGAGCAATTTCTAGATTCT  672

seq1  TGGACTTCCCATTCACAGTTGCAAATTGTTGGATAAATTAGACTGCAGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTCCCATTCACAGTTGCAAATTGTTGGATAAATTAGACTGCAGCC  722

seq1  TCTAAGTCATTCAAATAATTTCCCCTAATACATAGAGAAATTCTGTAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCATTCAAATAATTTCCCCTAATACATAGAGAAATTCTGTAAAT  772

seq1  TCTCCAACACTAGAGAACCCTGACTTATACAGTGCACTTTGGAGACTATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAACACTAGAGAACCCTGACTTATACAGTGCACTTTGGAGACTATG  822

seq1  AAGAAATTAACTCTATAATTCTACTACCTTATATAAAACTATCATTTTAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTAACTCTATAATTCTACTACCTTATATAAAACTATCATTTTAC  872

seq1  ATTTTAAGTCCATTTATTCTAGTTCCTTAAATAATAAAAACAGTACCAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGTCCATTTATTCTAGTTCCTTAAATAATAAAAACAGTACCAGG  922

seq1  CTTTTGGATCAATTTCTAGTATCTCTCTATCTTTACCTTAACACAGTTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGATCAATTTCTAGTATCTCTCTATCTTTACCTTAACACAGTTTC  972

seq1  AATAAATTCCTTTCTTGAGATTGTTTGCTTTCTAATAAAATCTATTTTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTCCTTTCTTGAGATTGTTTGCTTTCTAATAAAATCTATTTTTC  1022

seq1  TAATTAAAAACTGTAAATATGAGAAAATAGTGTAAAACTATTCAAAGTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAACTGTAAATATGAGAAAATAGTGTAAAACTATTCAAAGTAA  1072

seq1  GCCAAGAATTTTTTTCCAATATTTTCCTTTTAATCTCTGTCC--TTGTAT  1146
      ||||||||||||||||||||||||||||||||||||||||||  | | ||
seq2  GCCAAGAATTTTTTTCCAATATTTTCCTTTTAATCTCTGTCCAATGGGAT  1122

seq1  TGTGTTGAATTC  1158
      ||||||||||||
seq2  TGTGTTGAATTC  1134


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