BAC Information

Click to search

BAC

Clone NameB6Ng01-275N02
Chromosome3 (Build37)
Map Location 55,840,931 - 55,842,106
singlet/doubletsinglet
Overlap genenone
Upstream geneCcna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275N02.bB6Ng01-275N02.g
ACCGA076755GA076756
length1,1441,105
definitionB6Ng01-275N02.b B6Ng01-275N02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctggagtagtctgagatcctgaaagccaatgagagcattgtgt
ccacaagagtcaggtttgctttaccatggccaggctaggccaggccaggc
caggccaggcaaagttttgctgaggcaagttaatttcatttgtcggtttt
gaaatgccctaaaggaataaaacagtagcttctgctatgcttgctttgga
actgttttaaataaaagcacttttgttatctttaatttttgaattatcat
aattatttaactctaagttctgtaagatcctttgtcttttttttgcgatt
tttactcataaattactttacttctttatattgacaagagtgtcttaact
gtaaatagactgggcttttaataatgagctttcactcaaaggaatatctt
tttttattagatattttctttatttaatttcaaatatcccctttcctagt
ttcccctccgaaaatcccctatcccttccccgcccctgctccccaaccta
cccactcccattcctggtccttgccattcccctgtactggggcatagaac
cttcacaggacctagggcctctcctcccattgatggccgactaggccatc
catagagccacaagttccaccatgtgttttctttgattggtggtatagtt
ccaaggagctctaggggtactggttagttcatcatattgatgttcctcct
aaggggcttcaaacccctttagctctcaaaggaatatcttaaaatttcat
gtaactacatttttactaacagacaatatatgattttgtgcttttaattt
aaatttttagggacaatttgaattattcctataaacattttgtaatttga
tgtcacagacatttctagatagaatttctgtttctgtctttagtcatcaa
gagttcatataactagagctgtcttggagcagtttttatcatttgcaaat
acctcgatggcttatctcatgagcccattgctgaagcagctttgtgacac
atttgtcatccgcatctggatacacacactgcaagtctgtatttcagtca
ctcattatttagtaaataaaagtatgatacagtggtgtgtatagattatg
tatcagtagaaaactccagcattttttgtcttcagtcagttaag

gaattcttcttggtagatttttcctttgatgagtatgaagtgtccttcct
taccttttttgataaattttgatggaaagttgattttatttgcttttaga
atggctactccagcttgtttcttgggactatttccttgtagaattgtttt
ctagtcctttactctgaggtagtgtctgtctttaacactgaggtgcgttt
cctgtatgcagcaaaatgcttggtcctatttacatatccagtcggttagt
ctttgtctttttcttggggaattgattccattgatgttaagagataataa
gaaacagtgattgttgcttcttgttatttctgtggtcagaggtggaatta
tgtttctgtggctattttcttttaggtttgttgaaagaagattactttct
tgctttttctagagcctactttccctcattgagttttctgtctattatcc
tttgtatggctggatttgtggaacgatattgtgtaaatttggttttatca
tggaaaaatatcttggtatctccatctatggtaattgagagatttgctgg
gtatactagtgtgggctggcatttgtgttctcttagggtctgtatgacat
ctgcccaggatcttctaggtttcatagtctctggtgagaagtctgatgta
attctgataggtatccatctacatattacttgaccatttttcattactgc
ttttaatattctttctttgttttgtgcatttggtgttttgattattatgt
gatgggaggaatttcttttctgttccaaatctaattggagttctataggc
ttcttgtatgttcatgggcatctctttctttaggttagggaagttttctt
cttataattcttcttgaagatactgacttggcccttttaagttgggaatc
ttcactctcttttatagttattatcctttaggtctggtcttcctcattgt
gtcctgggaattcctgggatgttttgggttaagattcttttggcattttg
cattttcttgaactgttgggtcagggtttggatgggaatctccgcactga
gattcctgtttgatttccattattcggtgggggatgcttggcaccataga
tatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55840931_55842106
seq2: B6Ng01-275N02.b_45_1188 (reverse)

seq1  CTTATACTGACTAGAAGCAAAAAAAAATGCTGGATGTTTTCTACTGGATA  50
      |||| ||||||| ||||  | ||||||||||||| |||||||||| ||||
seq2  CTTA-ACTGACT-GAAG--ACAAAAAATGCTGGA-GTTTTCTACT-GATA  44

seq1  CATTAAATCTAATAACCACACACTGTATCATTAACTTTTATTTTAACCTA  100
      |||  ||||| |||  ||| |||||||||||  ||||||||||    |||
seq2  CAT--AATCT-ATACACAC-CACTGTATCAT--ACTTTTATTT---ACTA  85

seq1  AAATTAAATGAGTGAACCTGAAATACAGACCTTTGCAGGTGTGTGTATCC  150
      ||    |||||||||  |||||||||||||  ||||| ||||||||||||
seq2  AA---TAATGAGTGA--CTGAAATACAGAC--TTGCA-GTGTGTGTATCC  127

seq1  AGATGGCGGGATTGAACAAAATGTGGTCACAAAGCTGCTTCAGCAATGGG  200
      |||| ||||   |||   |||||| |||||||||||||||||||||| ||
seq2  AGAT-GCGG--ATGA--CAAATGT-GTCACAAAGCTGCTTCAGCAAT-GG  170

seq1  GCTCCATGAGATAAGCCATCGAGGTATTTTGCAAATGATAAAAACTGCTC  250
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCT-CATGAGATAAGCCATCGAGGTA-TTTGCAAATGATAAAAACTGCTC  218

seq1  CAAGACAGCTCTAGTTATATGAACTCTTGATGACTAAAGACAGAAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGCTCTAGTTATATGAACTCTTGATGACTAAAGACAGAAACAGA  268

seq1  AATTCTATCTAGAAATGTCTGTGACATCAAATTACAAAATGTTTATAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATCTAGAAATGTCTGTGACATCAAATTACAAAATGTTTATAGGA  318

seq1  ATAATTCAAATTGTCCCTAAAAATTTAAATTAAAAGCACAAAATCATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCAAATTGTCCCTAAAAATTTAAATTAAAAGCACAAAATCATATA  368

seq1  TTGTCTGTTAGTAAAAATGTAGTTACATGAAATTTTAAGATATTCCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTTAGTAAAAATGTAGTTACATGAAATTTTAAGATATTCCTTTG  418

seq1  AGAGCTAAAGGGGTTTGAAGCCCCTTAGGAGGAACATCAATATGATGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAAAGGGGTTTGAAGCCCCTTAGGAGGAACATCAATATGATGAAC  468

seq1  TAACCAGTACCCCTAGAGCTCCTTGGAACTATACCACCAATCAAAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGTACCCCTAGAGCTCCTTGGAACTATACCACCAATCAAAGAAAA  518

seq1  CACATGGTGGAACTTGTGGCTCTATGGATGGCCTAGTCGGCCATCAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGGAACTTGTGGCTCTATGGATGGCCTAGTCGGCCATCAATGG  568

seq1  GAGGAGAGGCCCTAGGTCCTGTGAAGGTTCTATGCCCCAGTACAGGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGGCCCTAGGTCCTGTGAAGGTTCTATGCCCCAGTACAGGGGAA  618

seq1  TGGCAAGGACCAGGAATGGGAGTGGGTAGGTTGGGGAGCAGGGGCGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGACCAGGAATGGGAGTGGGTAGGTTGGGGAGCAGGGGCGGGGA  668

seq1  AGGGATAGGGGATTTTCGGAGGGGAAACTAGGAAAGGGGATATTTGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAGGGGATTTTCGGAGGGGAAACTAGGAAAGGGGATATTTGAAAT  718

seq1  TAAATAAAGAAAATATCTAATAAAAAAAGATATTCCTTTGAGTGAAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAGAAAATATCTAATAAAAAAAGATATTCCTTTGAGTGAAAGCT  768

seq1  CATTATTAAAAGCCCAGTCTATTTACAGTTAAGACACTCTTGTCAATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTAAAAGCCCAGTCTATTTACAGTTAAGACACTCTTGTCAATATA  818

seq1  AAGAAGTAAAGTAATTTATGAGTAAAAATCGCAAAAAAAAGACAAAGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTAAAGTAATTTATGAGTAAAAATCGCAAAAAAAAGACAAAGGAT  868

seq1  CTTACAGAACTTAGAGTTAAATAATTATGATAATTCAAAAATTAAAGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGAACTTAGAGTTAAATAATTATGATAATTCAAAAATTAAAGATA  918

seq1  ACAAAAGTGCTTTTATTTAAAACAGTTCCAAAGCAAGCATAGCAGAAGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTGCTTTTATTTAAAACAGTTCCAAAGCAAGCATAGCAGAAGCT  968

seq1  ACTGTTTTATTCCTTTAGGGCATTTCAAAACCGACAAATGAAATTAACTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTATTCCTTTAGGGCATTTCAAAACCGACAAATGAAATTAACTT  1018

seq1  GCCTCAGCAAAACTTTGCCTGGCCTGGCCTGGCCTGGCCTAGCCTGGCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCAAAACTTTGCCTGGCCTGGCCTGGCCTGGCCTAGCCTGGCCA  1068

seq1  TGGTAAAGCAAACCTGACTCTTGTGGACACAATGCTCTCATTGGCTTTCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAGCAAACCTGACTCTTGTGGACACAATGCTCTCATTGGCTTTCA  1118

seq1  GGATCTCAGACTACTCCAGAGAATTC  1176
      ||||||||||||||||||||||||||
seq2  GGATCTCAGACTACTCCAGAGAATTC  1144


| Home | SequenceCutter | Blast | Download |