BAC Information

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BAC

Clone NameB6Ng01-275O07
Chromosome3 (Build37)
Map Location 150,360,657 - 150,535,437
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040620, LOC100040633, LOC100040455, LOC100040463, LOC623554
Downstream geneEltd1, Ifi44, H28, Ptgfr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275O07.bB6Ng01-275O07.g
ACCGA076812GA076813
length1,1741,088
definitionB6Ng01-275O07.b B6Ng01-275O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,534,237 - 150,535,437)(150,360,657 - 150,361,744)
sequence
gaattccaatagcatgacagtaaagatgtttcagtgcaaaatggtgtctg
tgttctatcagttactctctttaatcttaactctggttgatgagaagctg
gacaccagaggaagaaggaagatgccaagtcatttcattggcaaccttgt
tctcttcttccagtctccacagagatgctgcttccgtgatataccgtttt
cccttcggtgatatttcttcctacatcttaatggcagtgagactcctatg
atgttacttgcatttactagatcttaatacaccttggatacagaaacaaa
gtcagacagctcaattcacagcatttacataaacctggcacacagacaac
ttccccagtgttacactagaggatgcgctctgccttgcttgcaaagatct
gctggagatagagtaagtggctggcagagcaagcagtctgctgggtgtct
ttaagttacctgcagagcaggcgtctggatcactctgtctggcttctgca
cgtattttacagatgcctcctcgcatgcttctggagtcctcgggagcatt
ggagattcagggcttggcaaagccatgctcagctggggctatcttattta
atcttgccgaaaggggtgattctttggaaatgtgaaaataccttagcaag
caacatcaacagatgtatagtaaccaaaactcactggaaacacctacggg
gattcattctcctgacatacatttaactcccattatgattaatgaaagca
gtacttgatttacaacaccctgactttagacggctaatgtctacagagag
gagaatcatcagcaaaactgtaaactctgctcatagttcaactattttca
aaaataaattctcagctctatgttggatctagtggcttgattgtatgtat
catcatatctacccttgtcggcagaaccttagtttaatatcctccatatc
ttttttttttaaattcagcttaattaggaatttccacagaagatattcac
tgtcagtactaatgacttcacaaagaaaagaaaatttagctaaaacaaac
aaatgattagacctctgcaacacatattggctgctaatttgtcctactcc
atacctgtaatgaaccttagcagataagctatctaacttttaggaatgat
gcattaaattagcatattgatgaa

gaattcacatgaaacctacagtgagtccaaaacagaaatccagctcagca
gctgatgtgatggtttcctcatcctatgaggggtacagaggtagaggttg
ttgcagtgttgggatcattggtaaaaagaaacattatgacagcatgtgga
cttggtggctattgctgctggtggcaccaaatcagtggctgcaagctgct
gtcttcaatttcctgggtgattagtacgcaggaagctatttttgagccca
agtccaggcagaggcaagcatctccctaggtgttggttcctgaggctata
gcctcaggtacctcaactgaacactttccagggtacagcatgcagggttc
ctttcaagctgcaggaagctgccattgctcagcatgagttacagaacagc
tcatactcttgactgcaggtactagcgattttggctttctgtagataaag
actgggagagagcacaattggctggttctgacctttgtcaaatataaatc
ttacttcatctgaaaacaattgttcttatgttcactccacattatcccaa
atatgggccgagaagaaaagctttgaagattctttcacagaaaattgttt
ccatcaaattaacatcataaaatttcttaaacctttgagtgcacccacca
tgttcatttctacttaatgttttgcataaaataaaggcatgatgcttcaa
gttgacaaattcttattctcattaattctttaagtaccttcagatcaatt
atgagcttgtttgtttaagaacaaacagtagatgtttgatgtagctcttc
cttggtggtaaaagttgtttgttaaagagaagatgcatcattcatatccc
aatttaatttattcctcatttattcatactcatttttcctctcacaagtt
gctgtctttttcctgcatggttttcatgcttagaaccattaataactcaa
tgtattgagacaggtcttggtactgaggacttctcacaatatattttcta
taggcagcactgtaaaggattttctacatttttttatttttctacatttt
agaacagaggaaactgaggcatgcagaagacttgttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_150534237_150535437
seq2: B6Ng01-275O07.b_45_1218 (reverse)

seq1  TTCATCAATAAATGCTAAATATTAATGCATACTATTCCTATAAAAAGTTA  50
      |||||||||  |||||||   |||||||||   ||||||   ||||||||
seq2  TTCATCAAT--ATGCTAA--TTTAATGCAT--CATTCCT---AAAAGTTA  41

seq1  GATAGCTGTATCCCTGCTAAAGTTCATTACAAAGTTAATGTGGAAGGAAG  100
      ||||||| |||  ||||||| |||||||||  || ||   ||| || | |
seq2  GATAGCT-TAT--CTGCTAAGGTTCATTAC--AGGTA---TGG-AGTAGG  82

seq1  ACAAATTAGGCAAGCCATTAATTGTGTTGCAGA-GTCTAATCATTTGTTT  149
      |||||||||   ||||| ||  ||||||||||| ||||||||||||||||
seq2  ACAAATTAG--CAGCCAATA--TGTGTTGCAGAGGTCTAATCATTTGTTT  128

seq1  GTTTTAGCTAAAATTTTCTTTCTTTGTTGAAGTCATTAGTACTTGACAGT  199
      |||||||||||| |||  |||||||| ||||||||||||||| |||||||
seq2  GTTTTAGCTAAATTTTCTTTTCTTTG-TGAAGTCATTAGTAC-TGACAGT  176

seq1  GAATAATCTTCTGTGGAAAATTCCTAATTAAGCTGAATTTAAAAAAAAAA  249
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAAT-ATCTTCTGTGG-AAATTCCTAATTAAGCTGAATTTAAAAAAAAAA  224

seq1  GATATTGGAGGATATTAAACCTAAGGTTCTGCCGACAAGGGTAGATATGA  299
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATA-TGGAGGATATTAAA-CTAAGGTTCTGCCGACAAGGGTAGATATGA  272

seq1  TGATACATACAATCAAGCCACTAGATCCAACATAGAGCTGAGAATTTATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATACAATCAAGCCACTAGATCCAACATAGAGCTGAGAATTTATT  322

seq1  TTTGAAAATAGTTGAACTATGAGCAGAGTTTACAGTTTTGCTGATGATTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAATAGTTGAACTATGAGCAGAGTTTACAGTTTTGCTGATGATTC  372

seq1  TCCTCTCTGTAGACATTAGCCGTCTAAAGTCAGGGTGTTGTAAATCAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTGTAGACATTAGCCGTCTAAAGTCAGGGTGTTGTAAATCAAGT  422

seq1  ACTGCTTTCATTAATCATAATGGGAGTTAAATGTATGTCAGGAGAATGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTCATTAATCATAATGGGAGTTAAATGTATGTCAGGAGAATGAA  472

seq1  TCCCCGTAGGTGTTTCCAGTGAGTTTTGGTTACTATACATCTGTTGATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGTAGGTGTTTCCAGTGAGTTTTGGTTACTATACATCTGTTGATGT  522

seq1  TGCTTGCTAAGGTATTTTCACATTTCCAAAGAATCACCCCTTTCGGCAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTAAGGTATTTTCACATTTCCAAAGAATCACCCCTTTCGGCAAG  572

seq1  ATTAAATAAGATAGCCCCAGCTGAGCATGGCTTTGCCAAGCCCTGAATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAAGATAGCCCCAGCTGAGCATGGCTTTGCCAAGCCCTGAATCT  622

seq1  CCAATGCTCCCGAGGACTCCAGAAGCATGCGAGGAGGCATCTGTAAAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCTCCCGAGGACTCCAGAAGCATGCGAGGAGGCATCTGTAAAATA  672

seq1  CGTGCAGAAGCCAGACAGAGTGATCCAGACGCCTGCTCTGCAGGTAACTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCAGAAGCCAGACAGAGTGATCCAGACGCCTGCTCTGCAGGTAACTT  722

seq1  AAAGACACCCAGCAGACTGCTTGCTCTGCCAGCCACTTACTCTATCTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACCCAGCAGACTGCTTGCTCTGCCAGCCACTTACTCTATCTCCA  772

seq1  GCAGATCTTTGCAAGCAAGGCAGAGCGCATCCTCTAGTGTAACACTGGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTTTGCAAGCAAGGCAGAGCGCATCCTCTAGTGTAACACTGGGG  822

seq1  AAGTTGTCTGTGTGCCAGGTTTATGTAAATGCTGTGAATTGAGCTGTCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCTGTGTGCCAGGTTTATGTAAATGCTGTGAATTGAGCTGTCTG  872

seq1  ACTTTGTTTCTGTATCCAAGGTGTATTAAGATCTAGTAAATGCAAGTAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTTCTGTATCCAAGGTGTATTAAGATCTAGTAAATGCAAGTAAC  922

seq1  ATCATAGGAGTCTCACTGCCATTAAGATGTAGGAAGAAATATCACCGAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGGAGTCTCACTGCCATTAAGATGTAGGAAGAAATATCACCGAAG  972

seq1  GGAAAACGGTATATCACGGAAGCAGCATCTCTGTGGAGACTGGAAGAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACGGTATATCACGGAAGCAGCATCTCTGTGGAGACTGGAAGAAGA  1022

seq1  GAACAAGGTTGCCAATGAAATGACTTGGCATCTTCCTTCTTCCTCTGGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGGTTGCCAATGAAATGACTTGGCATCTTCCTTCTTCCTCTGGTG  1072

seq1  TCCAGCTTCTCATCAACCAGAGTTAAGATTAAAGAGAGTAACTGATAGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTCTCATCAACCAGAGTTAAGATTAAAGAGAGTAACTGATAGAA  1122

seq1  CACAGACACCATTTTGCACTGAAACATCTTTACTGTCATGCTATTGGAAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACCATTTTGCACTGAAACATCTTTACTGTCATGCTATTGGAAT  1172

seq1  TC  1201
      ||
seq2  TC  1174


seq1: chr3_150360657_150361744
seq2: B6Ng01-275O07.g_66_1153

seq1  GAATTCACATGAAACCTACAGTGAGTCCAAAACAGAAATCCAGCTCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGAAACCTACAGTGAGTCCAAAACAGAAATCCAGCTCAGCA  50

seq1  GCTGATGTGATGGTTTCCTCATCCTATGAGGGGTACAGAGGTAGAGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTGATGGTTTCCTCATCCTATGAGGGGTACAGAGGTAGAGGTTG  100

seq1  TTGCAGTGTTGGGATCATTGGTAAAAAGAAACATTATGACAGCATGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTGTTGGGATCATTGGTAAAAAGAAACATTATGACAGCATGTGGA  150

seq1  CTTGGTGGCTATTGCTGCTGGTGGCACCAAATCAGTGGCTGCAAGCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGCTATTGCTGCTGGTGGCACCAAATCAGTGGCTGCAAGCTGCT  200

seq1  GTCTTCAATTTCCTGGGTGATTAGTACGCAGGAAGCTATTTTTGAGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAATTTCCTGGGTGATTAGTACGCAGGAAGCTATTTTTGAGCCCA  250

seq1  AGTCCAGGCAGAGGCAAGCATCTCCCTAGGTGTTGGTTCCTGAGGCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGCAGAGGCAAGCATCTCCCTAGGTGTTGGTTCCTGAGGCTATA  300

seq1  GCCTCAGGTACCTCAACTGAACACTTTCCAGGGTACAGCATGCAGGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGGTACCTCAACTGAACACTTTCCAGGGTACAGCATGCAGGGTTC  350

seq1  CTTTCAAGCTGCAGGAAGCTGCCATTGCTCAGCATGAGTTACAGAACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGCTGCAGGAAGCTGCCATTGCTCAGCATGAGTTACAGAACAGC  400

seq1  TCATACTCTTGACTGCAGGTACTAGCGATTTTGGCTTTCTGTAGATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTCTTGACTGCAGGTACTAGCGATTTTGGCTTTCTGTAGATAAAG  450

seq1  ACTGGGAGAGAGCACAATTGGCTGGTTCTGACCTTTGTCAAATATAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAGAGAGCACAATTGGCTGGTTCTGACCTTTGTCAAATATAAATC  500

seq1  TTACTTCATCTGAAAACAATTGTTCTTATGTTCACTCCACATTATCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCATCTGAAAACAATTGTTCTTATGTTCACTCCACATTATCCCAA  550

seq1  ATATGGGCCGAGAAGAAAAGCTTTGAAGATTCTTTCACAGAAAATTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGCCGAGAAGAAAAGCTTTGAAGATTCTTTCACAGAAAATTGTTT  600

seq1  CCATCAAATTAACATCATAAAATTTCTTAAACCTTTGAGTGCACCCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAATTAACATCATAAAATTTCTTAAACCTTTGAGTGCACCCACCA  650

seq1  TGTTCATTTCTACTTAATGTTTTGCATAAAATAAAGGCATGATGCTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTTCTACTTAATGTTTTGCATAAAATAAAGGCATGATGCTTCAA  700

seq1  GTTGACAAATTCTTATTCTCATTAATTCTTTAAGTACCTTCAGATCAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAAATTCTTATTCTCATTAATTCTTTAAGTACCTTCAGATCAATT  750

seq1  ATGAGCTTGTTTGTTTAAGAACAAACAGTAGATGTTTGATGTAGCTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTTGTTTGTTTAAGAACAAACAGTAGATGTTTGATGTAGCTCTTC  800

seq1  CTTGGTGGTAAAAGTTGTTTGTTAAAGAGAAGATGCATCATTCATATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGTAAAAGTTGTTTGTTAAAGAGAAGATGCATCATTCATATCCC  850

seq1  AATTTAATTTATTCCTCATTTATTCATACTCATTTTTCCTCTCACAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATTTATTCCTCATTTATTCATACTCATTTTTCCTCTCACAAGTT  900

seq1  GCTGTCTTTTTCCTGCATGGTTTTCATGCTTAGAACCATTAATAACTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTTTTCCTGCATGGTTTTCATGCTTAGAACCATTAATAACTCAA  950

seq1  TGTATTGAGACAGGTCTTGGTTACTGAGGACTTCTCAC-ATATATTTTCT  999
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  TGTATTGAGACAGGTCTTGG-TACTGAGGACTTCTCACAATATATTTTCT  999

seq1  ATAGGCAGCCACTGTAAAGGAATTTTCTACA--TTTTTAATTTTCTACAT  1047
      |||||||| ||||||||||| ||||||||||  |||||| ||||||||||
seq2  ATAGGCAG-CACTGTAAAGG-ATTTTCTACATTTTTTTATTTTTCTACAT  1047

seq1  TTTTAGACAGAGGAAACTGAGGCATGCAGAAGACTTGTTAA  1088
      |||   |||||||||||||||||||||||||||||||||||
seq2  TTTAGAACAGAGGAAACTGAGGCATGCAGAAGACTTGTTAA  1088


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