BAC Information

Click to search

BAC

Clone NameB6Ng01-275P05
Chromosome3 (Build37)
Map Location 81,163,561 - 81,164,636
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275P05.bB6Ng01-275P05.g
ACCGA076851GA076852
length1,121190
definitionB6Ng01-275P05.b B6Ng01-275P05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctctgccttgccttatactaatgttagcaatatgctcttatcat
ctggctccttgtcattctcttgctccttttacacacctacaacttggctt
tgtaaaaatgtcccattaaaatggaactgcaaccccctctctcctgttgc
tgctactgctctcctaagtcatttctttttccagtctgttcttgagagtg
tatatactatctgactcattcttcaagtttttttctgactgcttacttta
tttgttcctcaactagaaaccactttcagacatggttgcttccttctaca
aactagttttaccttaaaagtgtatattaagggtgtacctgtattacaga
cagaagaaatagaggtatactagtccaggaagatccacacagacctcaaa
agatttagatgtgattccttgccagagcagctatgttgctgtattaaaat
tcctctacaagcagccatacataggatgcatatagaaacacatacacaca
cataaattctctacaaaaaaactaaaaataattagctttaaaaaaaaaga
aataaactgttttctgatcccccaatccagtctcagaaggaagaaatcca
aaattaagatgcaggaatggtatattggtctttgtcttcttcagtaaatc
ttcaaggaatcttgctttcaaatttcacgattatatttcatcagaaaaat
ttaaattgagaatagttttgtatatacattcttacaaaatctttatagtc
tataattaattttattttcacattgagttgcattgggcaatgttttatca
gaatgtggctgatgatggctgctccaccagctatgactgaatgggacatg
cgtctttattgctatatttctttttgagaatcagtaacaatgacctcttt
ctttggggacatttctctgcagcactgaggaattttcatatttctgagga
gatgtcacagagagatactgtggtatccatgtagattcttttgagatgtc
ttacatagttattgggaccagattttgagcagtaggtaaataacatgagc
taaacactgaacactacaatgttctattggtctttctaaccaccatggat
cttgcctctataattcagagg
aagagtaatgagggcacaacataaccaaacttatgggacacaatgaaaac
actgctaagtacatagaactaagtgccttcataaagaaagtgtcatacta
agaagttaaaagtctgtatgaaggatctagaaaatatgaagaaggagaag
gagaaggaggagcaggaggaggaggaggaggaggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81163561_81164636
seq2: B6Ng01-275P05.b_85_1170

seq1  ATATGCTCTTATCATCTGGCTCCTTGTCATTCTCTTGCTCCTTTTACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTCTTATCATCTGGCTCCTTGTCATTCTCTTGCTCCTTTTACACA  50

seq1  CCTACAACTTGGCTTTGTAAAAATGTCCCATTAAAATGGAACTGCAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAACTTGGCTTTGTAAAAATGTCCCATTAAAATGGAACTGCAACCC  100

seq1  CCTCTCTCCTGTTGCTGCTACTGCTCTCCTAAGTCATTTCTTTTTCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCCTGTTGCTGCTACTGCTCTCCTAAGTCATTTCTTTTTCCAGT  150

seq1  CTGTTCTTGAGAGTGTATATACTATCTGACTCATTCTTCAAGTTTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTGAGAGTGTATATACTATCTGACTCATTCTTCAAGTTTTTTTC  200

seq1  TGACTGCTTACTTTATTTGTTCCTCAACTAGAAACCACTTTCAGACATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTTACTTTATTTGTTCCTCAACTAGAAACCACTTTCAGACATGG  250

seq1  TTGCTTCCTTCTACAAACTAGTTTTACCTTAAAAGTGTATATTAAGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCTTCTACAAACTAGTTTTACCTTAAAAGTGTATATTAAGGGTG  300

seq1  TACCTGTATTACAGACAGAAGAAATAGAGGTATACTAGTCCAGGAAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTATTACAGACAGAAGAAATAGAGGTATACTAGTCCAGGAAGATC  350

seq1  CACACAGACCTCAAAAGATTTAGATGTGATTCCTTGCCAGAGCAGCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACCTCAAAAGATTTAGATGTGATTCCTTGCCAGAGCAGCTATG  400

seq1  TTGCTGTATTAAAATTCCTCTACAAGCAGCCATACATAGGATGCATATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTATTAAAATTCCTCTACAAGCAGCCATACATAGGATGCATATAG  450

seq1  AAACACATACACACACATAAATTCTCTACAAAAAAACTAAAAATAATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATACACACACATAAATTCTCTACAAAAAAACTAAAAATAATTAG  500

seq1  CTTTAAAAAAAAAGAAATAAACTGTTTTCTGATCCCCCAATCCAGTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAAAAAAGAAATAAACTGTTTTCTGATCCCCCAATCCAGTCTCA  550

seq1  GAAGGAAGAAATCCAAAATTAAGATGCAGGAATGGTATATTGGTCTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAAATCCAAAATTAAGATGCAGGAATGGTATATTGGTCTTTGT  600

seq1  CTTCTTCAGTAAATCTTCAAGGAATCTTGCTTTCAAATTTCACGATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAGTAAATCTTCAAGGAATCTTGCTTTCAAATTTCACGATTATA  650

seq1  TTTCATCAGAAAAATTTAAATTGAGAATAGTTTTGTATATACATTCTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAGAAAAATTTAAATTGAGAATAGTTTTGTATATACATTCTTAC  700

seq1  AAAATCTTTATAGTCTATAATTAATTTTATTTTCACATTGAGTTGCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTATAGTCTATAATTAATTTTATTTTCACATTGAGTTGCATTG  750

seq1  GGCAATGTTTTATCAGAATGTGGCTGATGATGGCTGCTCCACCAGCTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGTTTTATCAGAATGTGGCTGATGATGGCTGCTCCACCAGCTATG  800

seq1  ACTGAATGGGACATGCGTCTTTATTGCTATATTTCTTTTTGAGAATCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATGGGACATGCGTCTTTATTGCTATATTTCTTTTTGAGAATCAGT  850

seq1  AACAATGACCTCTTTCTTTGGGGACATTTCTCTGCAGCACTGAGGAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGACCTCTTTCTTTGGGGACATTTCTCTGCAGCACTGAGGAATTT  900

seq1  TCATATTTCTGAGGAGATGTCACAGAGAGATACTGTGGTATCCATGTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TCATATTTCTGAGGAGATGTCACAGAGAGATACTGTGGTATCCATGTAGA  950

seq1  ATC-TTTGAGATGTCTTACATAG-TATT-GGACCAGATTTTGAGCAGTTA  997
       || ||||||||||||||||||| |||| |||||||||||||||||||  
seq2  TTCTTTTGAGATGTCTTACATAGTTATTGGGACCAGATTTTGAGCAGTAG  1000

seq1  GTAAAT-ACATGAGCTAAACACTG-ACACTACAATGTTCCTAT--GTC-T  1042
      |||||| ||||||||||||||||| ||||||||||||| ||||  ||| |
seq2  GTAAATAACATGAGCTAAACACTGAACACTACAATGTT-CTATTGGTCTT  1049

seq1  TCTAACCACCATGG-TCTTGCCTCTATA--TCAGAGG  1076
      |||||||||||||| |||||||||||||  |||||||
seq2  TCTAACCACCATGGATCTTGCCTCTATAATTCAGAGG  1086