BAC Information

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BAC

Clone NameB6Ng01-276A15
Chromosome3 (Build37)
Map Location 93,067,522 - 93,215,598
singlet/doubletdoublet
Overlap geneEG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn
Upstream geneLOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574
Downstream geneEG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276A15.bB6Ng01-276A15.g
ACCGA076917GA076918
length3481,127
definitionB6Ng01-276A15.b B6Ng01-276A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,215,251 - 93,215,598)(93,067,522 - 93,068,625)
sequence
atgaatggtaagtgatacatatttattaatggccatgatattttgagctg
gtagagagccaatagttcaaggaatcggattcctttcctcactatagccc
tcttgttggtttcttggtaagatttttatttccctgaatcagagcagatt
cttactagttctcatggactgatattgtagatactgatactcatttctcc
accgccactgaaatgagtcaattcaaacaggattagattatattaaaggc
aggtttaatgggaagctgctctcagataggtgagttcactggccccaaag
accaaggtcagggaattcgccatggtgaagggtgggtggggggttagg
gaattctcagctcctcctgcaccatgcttgcctggatgctgccatgctcc
cactttgatgataatggattgaacctctgaacctgtaagccagccccaat
tacatattgtcttttataagacttggattggtcatggtgtctgctcacag
cagtaaaaccctaaccaacacagtgtccaagtaactggaagatcctagtt
agcatgggtgtttagttgtgagtaatagaaaagaagaactgttctcaaaa
gacttacaatacataaagggaactgaagtatctccataacagagcttcca
atcaccatttgcaaataccagctttacaaagttgcttacacctatgacta
atattatcttttctatctttctgttgcctaataaaaatgcaaatttcttg
aagggaaaaactactgtgaatactgtttcttctgtgatagttaaatacat
agaagcacaaagcatatggggattttgtttgcttgtttgtttgtttgctt
gcttgcttgcttgcttgctttcaattaaataaagcttattgggtcctaca
tgtccagttttgtagatactggggatatagatttttttcacatattccat
gtcttcaaacattattttacagtaataatgggcacatggtacagtacaat
aaagtatttccaatgatactaatgagaaagtctttgaagaaaaggaaaaa
aaataacatggcagaatctgggaatggtgaaataaatactgggaggaaat
gtgacatataagttacaaaatttactataaaaccaatgcaagaagaaaca
gataaattcaacaagtcatcaagaatttaagcatttaccctgataatcaa
agaggttctctttccatctccaaaccaaaaacatcacatctgggattgct
aaggagctctaccaaactttaaaaggatgttgtacaaggagagatggttt
caagtgccttaaaaggtactctgctactcttgcaagaaaacctgagtttg
gttcccagaagccattatcagttggctccacaacatctccttggataaaa
catctcttgataaacatcctccttggacaaatgccgcaaaaaaacatcaa
gtttaaaggtaggtgtctcctgtttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93215251_93215598
seq2: B6Ng01-276A15.b_52_399 (reverse)

seq1  CCTAACCCCCCACCCACCCTTCACCATGGCGAATTCCCTGACCTTGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCCCCCACCCACCCTTCACCATGGCGAATTCCCTGACCTTGGTCT  50

seq1  TTGGGGCCAGTGAACTCACCTATCTGAGAGCAGCTTCCCATTAAACCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCCAGTGAACTCACCTATCTGAGAGCAGCTTCCCATTAAACCTGC  100

seq1  CTTTAATATAATCTAATCCTGTTTGAATTGACTCATTTCAGTGGCGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATATAATCTAATCCTGTTTGAATTGACTCATTTCAGTGGCGGTGG  150

seq1  AGAAATGAGTATCAGTATCTACAATATCAGTCCATGAGAACTAGTAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAGTATCAGTATCTACAATATCAGTCCATGAGAACTAGTAAGAA  200

seq1  TCTGCTCTGATTCAGGGAAATAAAAATCTTACCAAGAAACCAACAAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTGATTCAGGGAAATAAAAATCTTACCAAGAAACCAACAAGAGG  250

seq1  GCTATAGTGAGGAAAGGAATCCGATTCCTTGAACTATTGGCTCTCTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGTGAGGAAAGGAATCCGATTCCTTGAACTATTGGCTCTCTACCA  300

seq1  GCTCAAAATATCATGGCCATTAATAAATATGTATCACTTACCATTCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAATATCATGGCCATTAATAAATATGTATCACTTACCATTCAT  348

seq1: chr3_93067522_93068625
seq2: B6Ng01-276A15.g_67_1193

seq1  GAATTCTCAGCTCCTCCTGCACCATGCTTGCCTGGATGCTGCCATGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCCTCCTGCACCATGCTTGCCTGGATGCTGCCATGCTCC  50

seq1  CACTTTGATGATAATGGATTGAACCTCTGAACCTGTAAGCCAGCCCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGATGATAATGGATTGAACCTCTGAACCTGTAAGCCAGCCCCAAT  100

seq1  TACATATTGTCTTTTATAAGACTTGGATTGGTCATGGTGTCTGCTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTGTCTTTTATAAGACTTGGATTGGTCATGGTGTCTGCTCACAG  150

seq1  CAGTAAAACCCTAACCAACACAGTGTCCAAGTAACTGGAAGATCCTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAACCCTAACCAACACAGTGTCCAAGTAACTGGAAGATCCTAGTT  200

seq1  AGCATGGGTGTTTAGTTGTGAGTAATAGAAAAGAAGAACTGTTCTCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGGTGTTTAGTTGTGAGTAATAGAAAAGAAGAACTGTTCTCAAAA  250

seq1  GACTTACAATACATAAAGGGAACTGAAGTATCTCCATAACAGAGCTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACAATACATAAAGGGAACTGAAGTATCTCCATAACAGAGCTTCCA  300

seq1  ATCACCATTTGCAAATACCAGCTTTACAAAGTTGCTTACACCTATGACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATTTGCAAATACCAGCTTTACAAAGTTGCTTACACCTATGACTA  350

seq1  ATATTATCTTTTCTATCTTTCTGTTGCCTAATAAAAATGCAAATTTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCTTTTCTATCTTTCTGTTGCCTAATAAAAATGCAAATTTCTTG  400

seq1  AAGGGAAAAACTACTGTGAATACTGTTTCTTCTGTGATAGTTAAATACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAAAACTACTGTGAATACTGTTTCTTCTGTGATAGTTAAATACAT  450

seq1  AGAAGCACAAAGCATATGGGGATTTTGTTTGCTTGTTTGTTTGTTTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACAAAGCATATGGGGATTTTGTTTGCTTGTTTGTTTGTTTGCTT  500

seq1  GCTTGCTTGCTTGCTTGCTTTCAATTAAATAAAGCTTATTGGGTCCTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTGCTTGCTTGCTTTCAATTAAATAAAGCTTATTGGGTCCTACA  550

seq1  TGTCCAGTTTTGTAGATACTGGGGATATAGATTTTTTTCACATATTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGTTTTGTAGATACTGGGGATATAGATTTTTTTCACATATTCCAT  600

seq1  GTCTTCAAACATTATTTTACAGTAATAATGGGCACATGGTACAGTACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAACATTATTTTACAGTAATAATGGGCACATGGTACAGTACAAT  650

seq1  AAAGTATTTCCAATGATACTAATGAGAAAGTCTTTGAAGAAAAGGAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTCCAATGATACTAATGAGAAAGTCTTTGAAGAAAAGGAAAAA  700

seq1  AAATAACATGGCAGAATCTGGGAATGGTGAAATAAATACTGGGAGGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACATGGCAGAATCTGGGAATGGTGAAATAAATACTGGGAGGAAAT  750

seq1  GTGACATATAAGTTACAAAATTTACTATAAAACCAATGCAAGAAGAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATATAAGTTACAAAATTTACTATAAAACCAATGCAAGAAGAAACA  800

seq1  GATAAATTCAACAAGTCATCAAGAATTTAAGCATTTA-CCTGATAATCAA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATAAATTCAACAAGTCATCAAGAATTTAAGCATTTACCCTGATAATCAA  850

seq1  AGAGGTTCTC-TTCCATCTCCAAACCAAAAACATCACATCT-GGATTGCT  897
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  AGAGGTTCTCTTTCCATCTCCAAACCAAAAACATCACATCTGGGATTGCT  900

seq1  AAGGAGCTCTACCAAACTTTAAAA-GATGTTGTAC-AGGAGAGATGGTT-  944
      |||||||||||||||||||||||| |||||||||| ||||||||||||| 
seq2  AAGGAGCTCTACCAAACTTTAAAAGGATGTTGTACAAGGAGAGATGGTTT  950

seq1  -CAGTG-CTTAAAA-GTAC-CTGCTACTCTTGC-AGAAAACCTGAGTTTG  989
        |||| ||||||| |||| ||||||||||||| ||||||||||||||||
seq2  CAAGTGCCTTAAAAGGTACTCTGCTACTCTTGCAAGAAAACCTGAGTTTG  1000

seq1  GTTCCCAGAAGCCA-TATCAG-TGGCTCACAAACATCTC--TTGAT-AAA  1034
      |||||||||||||| |||||| ||||||   ||||||||  | ||| |||
seq2  GTTCCCAGAAGCCATTATCAGTTGGCTCCACAACATCTCCTTGGATAAAA  1050

seq1  CATCTCTTGATAAACAT-CTC--TTGACAAATG-CGCAAAAAAACATC-A  1079
      ||||||||||||||||| |||  | |||||||| |||||||||||||| |
seq2  CATCTCTTGATAAACATCCTCCTTGGACAAATGCCGCAAAAAAACATCAA  1100

seq1  GTT--AAAGTAAGTGTCTCCTGTTTAC  1104
      |||  || ||| |||||||||||||||
seq2  GTTTAAAGGTAGGTGTCTCCTGTTTAC  1127