BAC Information

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BAC

Clone NameB6Ng01-276B14
Chromosome3 (Build37)
Map Location 97,114,302 - 97,324,366
singlet/doubletdoublet
Overlap geneOlfr1402
Upstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
Downstream geneChd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276B14.bB6Ng01-276B14.g
ACCGA076962GA076963
length1,0881,144
definitionB6Ng01-276B14.b B6Ng01-276B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,323,294 - 97,324,366)(97,114,302 - 97,115,444)
sequence
gaattcctgtggcctcacgtttagccccctcacaggtgaaccaaatttgt
gttgggaaatgcttctctatgatgacacccgatgagttgtgagcagctcc
catagccacacagtccccgcagaggctcaccttaaagccacctcgtctgc
gcatgcccatctcacagcccctcgggcattcagagcagcctttctgttac
ctgggcctcaatatcctctgtagtcttatacattcttcagaaaaatgcct
ttcagtgtgttccgatgccccgtctctcttctgaggatgtggttatataa
ctgtccttgtgagtggtggttcccagaacaacccccacagaatggcgagg
caaaattgcagacagcccgtaggttttccagaagtggatgtgcgagcttc
tcggtgcagtggtgtggagtgaagcttactcatcgaaaacttgggcgctg
tgttcatttctcttcgtgaatgtaatgtttgttcccaggaactagaaaag
ccgatcaggtggattttgaatgttgattccatcaggatcaacattcctcc
aagtgttattgtgaagatcactcaaattaatatgtgcaaatcatttaatc
ttccctatgtatagtaggtacttaataaatagtagattatataattacaa
gcaacaattatgatttaagatgatctctaagtttgccaacacatcttgat
tgctgagattttttttgttgttttttgttttgtttgtttgtttgtttgtt
ttttaattttagagcttgcagtgacttcaggactctcaattctctatcac
tcaaatacttattacaatacatcctgattctggacaaaaagagtagacat
aaactttcctacaccagaaagcaaaacaccccttcttcctcttccatgac
tgtgttaaccgcatgatagaagcagtgtggccagcagggaagcgtaactg
ggcaggaagttcattggttacaaggaaggcattttgctggaatggtacag
ttctgaagtggtctttcgagaatgaagtaagaaggtgacagtttcagttg
ttccagaagggagacctggttcagttgtaaaccaaaac
gaattcacttgcaggaagcttgcttttctctcttagaggctttctgtgag
aaggcccaggttttcaaactgacctctaagattagtgtttgctcactttc
ctgggctgcctggacctgtaaactggtcacatcagaaccgtgccacagag
tcctgagagggccaagggcgaagtgcattgtgggttctaccaaagtaaac
tccatgctaccactagagaaatatctggattggtgtcccggccccactgt
cctctttgcacatcaccagaccttattaaatgctgttaaggagttctctc
aaaatacaatctttattaatggcagtgcggtgttttggggtatagaggat
attcacttcgatccgccacccctgttcacttccttgggtttctttcagcc
tctgccttctgcacactgcctagcttgctctctacagctgtgagaaacgc
aacaagggcaagcaaccccggcaggaactttatctcataaaataagaatc
caggtttattcttacaatttgtggtccatcatgatggaaggcagggcagg
aactcaaggcaggaactcagaggcaggaactgaggcagaagccaaagagg
acctctgcttgtttgcttgcgtatgacgcatgtactcagcctgctttctt
atgtcactcaggagtgccagcccagggatgacaccagctccggtggggtg
aaccctctcacttcagtccttaatcaagaaaatgcaggcggggtttggtg
ggacacacctttattccctgcactcagaggctgaggctggaggatctcag
tgaatccaacgcagcctggtctccctggtgagttccaggccagccaggga
tacatagtgagaccctcctcaaacaggctgctctcagcccaataggcttc
tagtctctcagagcaggatcacatttctggccaccattctcacaactgaa
taccagggttggccttggacccccacttctctcaggagctcatgtaagta
aaggagagcttgttgttcaagtgtagagttgcagaattgtatccttagcc
atttgggagcgggacatgattagatgaaggggattcagatccaatcctgg
acttacacgagcagttcagcctgatcttccgcaaataaaccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_97323294_97324366
seq2: B6Ng01-276B14.b_50_1137 (reverse)

seq1  GTTTT-GTTTAC-ACTG-ACCA-GTCTCCC-TCTGGA--CACTGAAACTG  43
      ||||| |||||| |||| |||| ||||||| ||||||   ||||||||||
seq2  GTTTTGGTTTACAACTGAACCAGGTCTCCCTTCTGGAACAACTGAAACTG  50

seq1  TCA-CTTCTTAC-TCATTCTCGAAAGA-CACCTCAG-ACTGTACCATTCC  89
      ||| |||||||| |||||||||||||| ||| |||| |||||||||||||
seq2  TCACCTTCTTACTTCATTCTCGAAAGACCACTTCAGAACTGTACCATTCC  100

seq1  AGC-AAATGCCTTCCTTGT-ACCAATGAACTTCCTG-CCAGTTACGCTTC  136
      ||| ||||||||||||||| |||||||||||||||| |||||||||||||
seq2  AGCAAAATGCCTTCCTTGTAACCAATGAACTTCCTGCCCAGTTACGCTTC  150

seq1  CCTGCTGGCCACACTGCTTCTATCATGCGGTTAACACAGTCATGGAGGAG  186
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTGCTGGCCACACTGCTTCTATCATGCGGTTAACACAGTCATGGAAGAG  200

seq1  GAAGAAGGGGTGTTTTGCTTTCTGGTGTAGGAAAG-TTATGTCTACTCTT  235
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAGAAGGGGTGTTTTGCTTTCTGGTGTAGGAAAGTTTATGTCTACTCTT  250

seq1  TTTGTCCAGAATCAGGATGTATTGTAATAAGTATTTGAGTGATAGAGAAT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCAGAATCAGGATGTATTGTAATAAGTATTTGAGTGATAGAGAAT  300

seq1  TGAGAGTCCTGAAGTCACTGCAAGCTCTAAAATTAAAAAACAAACAAACA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTCCTGAAGTCACTGCAAGCTCTAAAATTAAAAAACAAACAAACA  350

seq1  AACAAACAAAACAAAAAACAACAAAAAAAATCTCAGCAATCAAGATGTGT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAACAAAAAACAACAAAAAAAATCTCAGCAATCAAGATGTGT  400

seq1  TGGCAAACTTAGAGATCATCTTAAATCATAATTGTTGCTTGTAATTATAT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAACTTAGAGATCATCTTAAATCATAATTGTTGCTTGTAATTATAT  450

seq1  AATCTACTATTTATTAAGTACCTACTATACATAGGGAAGATTAAATGATT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACTATTTATTAAGTACCTACTATACATAGGGAAGATTAAATGATT  500

seq1  TGCACATATTAATTTGAGTGATCTTCACAATAACACTTGGAGGAATGTTG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATATTAATTTGAGTGATCTTCACAATAACACTTGGAGGAATGTTG  550

seq1  ATCCTGATGGAATCAACATTCAAAATCCACCTGATCGGCTTTTCTAGTTC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGATGGAATCAACATTCAAAATCCACCTGATCGGCTTTTCTAGTTC  600

seq1  CTGGGAACAAACATTACATTCACGAAGAGAAATGAACACAGCGCCCAAGT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACAAACATTACATTCACGAAGAGAAATGAACACAGCGCCCAAGT  650

seq1  TTTCGATGAGTAAGCTTCACTCCACACCACTGCACCGAGAAGCTCGCACA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGATGAGTAAGCTTCACTCCACACCACTGCACCGAGAAGCTCGCACA  700

seq1  TCCACTTCTGGAAAACCTACGGGCTGTCTGCAATTTTGCCTCGCCATTCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCTGGAAAACCTACGGGCTGTCTGCAATTTTGCCTCGCCATTCT  750

seq1  GTGGGGGTTGTTCTGGGAACCACCACTCACAAGGACAGTTATATAACCAC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGTTGTTCTGGGAACCACCACTCACAAGGACAGTTATATAACCAC  800

seq1  ATCCTCAGAAGAGAGACGGGGCATCGGAACACACTGAAAGGCATTTTTCT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGAAGAGAGACGGGGCATCGGAACACACTGAAAGGCATTTTTCT  850

seq1  GAAGAATGTATAAGACTACAGAGGATATTGAGGCCCAGGTAACAGAAAGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGTATAAGACTACAGAGGATATTGAGGCCCAGGTAACAGAAAGG  900

seq1  CTGCTCTGAATGCCCGAGGGGCTGTGAGATGGGCATGCGCAGACGAGGTG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGAATGCCCGAGGGGCTGTGAGATGGGCATGCGCAGACGAGGTG  950

seq1  GCTTTAAGGTGAGCCTCTGCGGGGACTGTGTGGCTATGGGAGCTGCTCAC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAGGTGAGCCTCTGCGGGGACTGTGTGGCTATGGGAGCTGCTCAC  1000

seq1  AACTCATCGGGTGTCATCATAGAGAAGCATTTCCCAACACAAATTTGGTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCGGGTGTCATCATAGAGAAGCATTTCCCAACACAAATTTGGTT  1050

seq1  CACCTGTGAGGGGGCTAAACGTGAGGCCACAGGAATTC  1073
      ||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGAGGGGGCTAAACGTGAGGCCACAGGAATTC  1088

seq1: chr3_97114302_97115444
seq2: B6Ng01-276B14.g_66_1209

seq1  GAATTCACTTGCAGGAAGCTTGCTTTTCTCTCTTAGAGGCTTTCTGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGCAGGAAGCTTGCTTTTCTCTCTTAGAGGCTTTCTGTGAG  50

seq1  AAGGCCCAGGTTTTCAAACTGACCTCTAAGATTAGTGTTTGCTCACTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCAGGTTTTCAAACTGACCTCTAAGATTAGTGTTTGCTCACTTTC  100

seq1  CTGGGCTGCCTGGACCTGTAAACTGGTCACATCAGAACCGTGCCACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGCCTGGACCTGTAAACTGGTCACATCAGAACCGTGCCACAGAG  150

seq1  TCCTGAGAGGGCCAAGGGCGAAGTGCATTGTGGGTTCTACCAAAGTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAGGGCCAAGGGCGAAGTGCATTGTGGGTTCTACCAAAGTAAAC  200

seq1  TCCATGCTACCACTAGAGAAATATCTGGATTGGTGTCCCGGCCCCACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTACCACTAGAGAAATATCTGGATTGGTGTCCCGGCCCCACTGT  250

seq1  CCTCTTTGCACATCACCAGACCTTATTAAATGCTGTTAAGGAGTTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGCACATCACCAGACCTTATTAAATGCTGTTAAGGAGTTCTCTC  300

seq1  AAAATACAATCTTTATTAATGGCAGTGCGGTGTTTTGGGGTATAGAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAATCTTTATTAATGGCAGTGCGGTGTTTTGGGGTATAGAGGAT  350

seq1  ATTCACTTCGATCCGCCACCCCTGTTCACTTCCTTGGGTTTCTTTCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTCGATCCGCCACCCCTGTTCACTTCCTTGGGTTTCTTTCAGCC  400

seq1  TCTGCCTTCTGCACACTGCCTAGCTTGCTCTCTACAGCTGTGAGAAACGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCTGCACACTGCCTAGCTTGCTCTCTACAGCTGTGAGAAACGC  450

seq1  AACAAGGGCAAGCAACCCCGGCAGGAACTTTATCTCATAAAATAAGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGGCAAGCAACCCCGGCAGGAACTTTATCTCATAAAATAAGAATC  500

seq1  CAGGTTTATTCTTACAATTTGTGGTCCATCATGATGGAAGGCAGGGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTATTCTTACAATTTGTGGTCCATCATGATGGAAGGCAGGGCAGG  550

seq1  AACTCAAGGCAGGAACTCAGAGGCAGGAACTGAGGCAGAAGCCAAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGGCAGGAACTCAGAGGCAGGAACTGAGGCAGAAGCCAAAGAGG  600

seq1  ACCTCTGCTTGTTTGCTTGCGTATGACGCATGTACTCAGCCTGCTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCTTGTTTGCTTGCGTATGACGCATGTACTCAGCCTGCTTTCTT  650

seq1  ATGTCACTCAGGAGTGCCAGCCCAGGGATGACACCAGCTCCGGTGGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTCAGGAGTGCCAGCCCAGGGATGACACCAGCTCCGGTGGGGTG  700

seq1  AACCCTCTCACTTCAGTCCTTAATCAAGAAAATGCAGGCGGGGTTTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCTCACTTCAGTCCTTAATCAAGAAAATGCAGGCGGGGTTTGGTG  750

seq1  GGACACACCTTTATTCCCTGCACTCAGAGGCTGAGGCTGGAGGATCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACCTTTATTCCCTGCACTCAGAGGCTGAGGCTGGAGGATCTCAG  800

seq1  TGAATCCAACGCAGCCTGGTCTCCCTGGTGAGTTCCAGGCCAGCCAGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCAACGCAGCCTGGTCTCCCTGGTGAGTTCCAGGCCAGCCAGGGA  850

seq1  TACATAGTGAGACCCTCCTCAAACAGGCTGCTCTCAGCCCAATAGGCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTGAGACCCTCCTCAAACAGGCTGCTCTCAGCCCAATAGGCTTC  900

seq1  TAGCCTCTCAGAGCAGGATCACA-TTCTGGCCACCATTCTCAC-ACTGAA  948
      ||| ||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  TAGTCTCTCAGAGCAGGATCACATTTCTGGCCACCATTCTCACAACTGAA  950

seq1  TACCAGGGTTGGCCTTGGCCCCCAACTTCTCTCAGGAGCTCATGTAAGTA  998
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  TACCAGGGTTGGCCTTGGACCCCCACTTCTCTCAGGAGCTCATGTAAGTA  1000

seq1  AAGGAGGAGCTTG-TGTTCAGGTGTAGAGTTGCAGGATTGTAATCCTAG-  1046
      ||||| ||||||| |||||| |||||||||||||| ||||||  | ||| 
seq2  AAGGA-GAGCTTGTTGTTCAAGTGTAGAGTTGCAGAATTGTATCCTTAGC  1049

seq1  CATTTGGGAGGCGGAGATGGATAGATTGAAAGGGGAATTCAGAATCAAT-  1095
      ||||||||||  ||| |||  |||| ||||  ||| |||||||  |||| 
seq2  CATTTGGGAGCGGGACATGATTAGA-TGAA--GGGGATTCAGATCCAATC  1096

seq1  CTGGAC-TACAC-AGCAAGTTCAAGGCTGGTCTTCCGCAAATAAAACCTC  1143
      |||||| ||||| ||| ||||| || ||| ||||||||||||||| ||||
seq2  CTGGACTTACACGAGC-AGTTC-AGCCTGATCTTCCGCAAATAAACCCTC  1144