BAC Information

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BAC

Clone NameB6Ng01-276G01
Chromosome3 (Build37)
Map Location 38,718,103 - 38,853,531
singlet/doubletdoublet
Overlap geneFat4
Upstream gene4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
Downstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276G01.bB6Ng01-276G01.g
ACCGA077174GA077175
length8901,162
definitionB6Ng01-276G01.b B6Ng01-276G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,852,643 - 38,853,531)(38,718,103 - 38,719,254)
sequence
gaattcttgttcttactgagatccatagccaccaccaacacctaggagtc
acagtgataccaaagactgtccatgaaaaactgggttctgtgtggacatg
caaaatggttcccagctgagatcaatggaaattagaaacagtaatagcat
tctacttgacttcagtagagacctatgggatccgcacaaatcagctcaac
tgggagccattccagcctgctgtcatgaatctaagcatcctcatggccct
cgtggtaaatgttaaactgtggagaagaaaacgacaaggtcacaaagctc
atggcctttcatgaagggaaaggggtaatcacaaataaattaggcaatgc
cacttaaaacaaaccagagataactatgatctttgaaacaacaaagtgtc
tgttatatcatggaatgttttaaggcaagaaataagccttatctcagaat
gagaatataacagtgttacactgagttgcactttaaaggagacgtttccc
tccaaagagtctaattaataaagcaaccttggccttgaaatttataccta
ggaaaatgcattccagaaggactcagagctcctctcaacactggctcaat
ttagaaaattacaaagatctaaccatttcccctcctgttccttgcagcaa
atgtcagagcagaaaaacaggaaacacatactttttcttaattttgagta
aaacgttagaatttttattgggtgggcttttacagtccagtggaatacta
cactggatatgggttgtttttcaactattcaagttcaacttgctggaagt
catgtggttccatgattttccttgggaatttaattgctataaagctttgc
agatgcacaaaggtgtgtgtgtggtagggaggggatgtat

gaattccaaacatcatacatttgtagaaaacatctgcagcttgtgaaatt
acattcctgcagagcatgaggcgaatcagagtcagctgctatggacaatc
tgaagcagccccgtatcccatacctgggattaaaacaaaaacatattcac
ataacatttccatgttttttaaagaaaccaaaattctcactacacagtgt
gataagcaaagatcggtgttatctcagaggacaaggatacctagaaacct
gggtacctggagctcaaaccttgggactcacatggaggaaagagaaagca
gactcttgctgtcctctggcctccacatgatacagaggcatgcatactaa
tacacacacacacacacacacacacacacacacacacacaatcattttaa
aacctgtcttccttaaggttaagttcttgggatcaagtgttctctttttc
tcatttgttggcatccaagttttgtgagagaactgaaattgcacaatttg
cacaatgagacaaagcctgaaagctacgggatttaccttgcctctgttgc
tttatgacatacagactccatagactttgcttaaaacaaaacaaaatgaa
aaataccaaaatccaaaaaaaccaaaaacaaacaaaaaagctttcttttg
gcttctggttggggaagtagagccataagggaccacattcgatgcctggc
ttccttcttagcctacagtgttgcactaatggccttatctgctcccagtc
accccaggctctgacctctgaatgcagctggctccatcattctcttaata
cctccgagtggggagccagcataagtcttggggtcagaatccacatctga
tatgcacaaagggtcatagccgtctttaatctttagcgcactacacagac
agtccacatcaagtatctagacatccccaactgcctttgttcctgtccca
tagcaaaggaaacttgggttcagaaaagaagacacatgctttctccaagg
attcccagcttatgggcaatgggtaaactagacatctaggcaaattttcc
tgaatgcaagttcttactcttatggagaggcatagcagccaacctagagg
tcacctgaatgtttccccagggactgagttaaggccacacatgcccaaga
aatttttttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38852643_38853531
seq2: B6Ng01-276G01.b_45_934 (reverse)

seq1  ATACATCCCCT-CCTACCACACACACACCTTTGTGCATCTGCAAAGCTTT  49
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCCCTCCCTACCACACACACACCTTTGTGCATCTGCAAAGCTTT  50

seq1  ATAGCAATTAAATTCCCAAGGAAAATCATGGAACCACATGACTTCCAGCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATTAAATTCCCAAGGAAAATCATGGAACCACATGACTTCCAGCA  100

seq1  AGTTGAACTTGAATAGTTGAAAAACAACCCATATCCAGTGTAGTATTCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAACTTGAATAGTTGAAAAACAACCCATATCCAGTGTAGTATTCCA  150

seq1  CTGGACTGTAAAAGCCCACCCAATAAAAATTCTAACGTTTTACTCAAAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGTAAAAGCCCACCCAATAAAAATTCTAACGTTTTACTCAAAAT  200

seq1  TAAGAAAAAGTATGTGTTTCCTGTTTTTCTGCTCTGACATTTGCTGCAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAAGTATGTGTTTCCTGTTTTTCTGCTCTGACATTTGCTGCAAG  250

seq1  GAACAGGAGGGGAAATGGTTAGATCTTTGTAATTTTCTAAATTGAGCCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGAGGGGAAATGGTTAGATCTTTGTAATTTTCTAAATTGAGCCAG  300

seq1  TGTTGAGAGGAGCTCTGAGTCCTTCTGGAATGCATTTTCCTAGGTATAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGAGGAGCTCTGAGTCCTTCTGGAATGCATTTTCCTAGGTATAAA  350

seq1  TTTCAAGGCCAAGGTTGCTTTATTAATTAGACTCTTTGGAGGGAAACGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGCCAAGGTTGCTTTATTAATTAGACTCTTTGGAGGGAAACGTC  400

seq1  TCCTTTAAAGTGCAACTCAGTGTAACACTGTTATATTCTCATTCTGAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAAGTGCAACTCAGTGTAACACTGTTATATTCTCATTCTGAGAT  450

seq1  AAGGCTTATTTCTTGCCTTAAAACATTCCATGATATAACAGACACTTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTATTTCTTGCCTTAAAACATTCCATGATATAACAGACACTTTGT  500

seq1  TGTTTCAAAGATCATAGTTATCTCTGGTTTGTTTTAAGTGGCATTGCCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAAGATCATAGTTATCTCTGGTTTGTTTTAAGTGGCATTGCCTA  550

seq1  ATTTATTTGTGATTACCCCTTTCCCTTCATGAAAGGCCATGAGCTTTGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGTGATTACCCCTTTCCCTTCATGAAAGGCCATGAGCTTTGTG  600

seq1  ACCTTGTCGTTTTCTTCTCCACAGTTTAACATTTACCACGAGGGCCATGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTCGTTTTCTTCTCCACAGTTTAACATTTACCACGAGGGCCATGA  650

seq1  GGATGCTTAGATTCATGACAGCAGGCTGGAATGGCTCCCAGTTGAGCTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTAGATTCATGACAGCAGGCTGGAATGGCTCCCAGTTGAGCTGA  700

seq1  TTTGTGCGGATCCCATAGGTCTCTACTGAAGTCAAGTAGAATGCTATTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCGGATCCCATAGGTCTCTACTGAAGTCAAGTAGAATGCTATTAC  750

seq1  TGTTTCTAATTTCCATTGATCTCAGCTGGGAACCATTTTGCATGTCCACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAATTTCCATTGATCTCAGCTGGGAACCATTTTGCATGTCCACA  800

seq1  CAGAACCCAGTTTTTCATGGACAGTCTTTGGTATCACTGTGACTCCTAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCAGTTTTTCATGGACAGTCTTTGGTATCACTGTGACTCCTAGG  850

seq1  TGTTGGTGGTGGCTATGGATCTCAGTAAGAACAAGAATTC  889
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGGTGGCTATGGATCTCAGTAAGAACAAGAATTC  890


seq1: chr3_38718103_38719254
seq2: B6Ng01-276G01.g_69_1230

seq1  GAATTCCAAACATCATACATTTGTAGAAAACATCTGCAGCTTGTGAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACATCATACATTTGTAGAAAACATCTGCAGCTTGTGAAATT  50

seq1  ACATTCCTGCAGAGCATGAGGCGAATCAGAGTCAGCTGCTATGGACAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTGCAGAGCATGAGGCGAATCAGAGTCAGCTGCTATGGACAATC  100

seq1  TGAAGCAGCCCCGTATCCCATACCTGGGATTAAAACAAAAACATATTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGCCCCGTATCCCATACCTGGGATTAAAACAAAAACATATTCAC  150

seq1  ATAACATTTCCATGTTTTTTAAAGAAACCAAAATTCTCACTACACAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTTCCATGTTTTTTAAAGAAACCAAAATTCTCACTACACAGTGT  200

seq1  GATAAGCAAAGATCGGTGTTATCTCAGAGGACAAGGATACCTAGAAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCAAAGATCGGTGTTATCTCAGAGGACAAGGATACCTAGAAACCT  250

seq1  GGGTACCTGGAGCTCAAACCTTGGGACTCACATGGAGGAAAGAGAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCTGGAGCTCAAACCTTGGGACTCACATGGAGGAAAGAGAAAGCA  300

seq1  GACTCTTGCTGTCCTCTGGCCTCCACATGATACAGAGGCATGCATACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTGCTGTCCTCTGGCCTCCACATGATACAGAGGCATGCATACTAA  350

seq1  TACACACACACACACACACACACACACACACACACACACAATCATTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACACACACACACACACACAATCATTTTAA  400

seq1  AACCTGTCTTCCTTAAGGTTAAGTTCTTGGGATCAAGTGTTCTCTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTCTTCCTTAAGGTTAAGTTCTTGGGATCAAGTGTTCTCTTTTTC  450

seq1  TCATTTGTTGGCATCCAAGTTTTGTGAGAGAACTGAAATTGCACAATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTTGGCATCCAAGTTTTGTGAGAGAACTGAAATTGCACAATTTG  500

seq1  CACAATGAGACAAAGCCTGAAAGCTACGGGATTTACCTTGCCTCTGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGAGACAAAGCCTGAAAGCTACGGGATTTACCTTGCCTCTGTTGC  550

seq1  TTTATGACATACAGACTCCATAGACTTTGCTTAAAACAAAACAAAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACATACAGACTCCATAGACTTTGCTTAAAACAAAACAAAATGAA  600

seq1  AAATACCAAAATCCAAAAAAACCAAAAACAAACAAAAAAGCTTTCTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCAAAATCCAAAAAAACCAAAAACAAACAAAAAAGCTTTCTTTTG  650

seq1  GCTTCTGGTTGGGGAAGTAGAGCCATAAGGGACCACATTCGATGCCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGTTGGGGAAGTAGAGCCATAAGGGACCACATTCGATGCCTGGC  700

seq1  TTCCTTCTTAGCCTACAGTGTTGCACTAATGGCCTTATCTGCTCCCAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTTAGCCTACAGTGTTGCACTAATGGCCTTATCTGCTCCCAGTC  750

seq1  ACCCCAGGCTCTGACCTCTGAATGCAGCTGGCTCCATCATTCTCTTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGGCTCTGACCTCTGAATGCAGCTGGCTCCATCATTCTCTTAATA  800

seq1  CCTCCGAGTGGGGAGCCAGCATAAGTCTTGGGGTCAGAATCCACATCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGAGTGGGGAGCCAGCATAAGTCTTGGGGTCAGAATCCACATCTGA  850

seq1  TATGCACAAAGGGTCATAGCCGTCTTTAATCTTTAGCGCACTACACAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACAAAGGGTCATAGCCGTCTTTAATCTTTAGCGCACTACACAGAC  900

seq1  AGTCCACATCAAGTATCTAGACATCCCCAACTGCCTTTGTTCCTGTCCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACATCAAGTATCTAGACATCCCCAACTGCCTTTGTTCCTGTCCCA  950

seq1  TAGC-AAGGAAACTTGGGTTCAG-AAAGAAGACACATGCTTTCTCCAAGG  998
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAGCAAAGGAAACTTGGGTTCAGAAAAGAAGACACATGCTTTCTCCAAGG  1000

seq1  ATT-CCAGCTTATGGGCAATGG--TAACTAGACATCTAGGCAAATTTTCC  1045
      ||| ||||||||||||||||||   |||||||||||||||||||||||||
seq2  ATTCCCAGCTTATGGGCAATGGGTAAACTAGACATCTAGGCAAATTTTCC  1050

seq1  TGAATGCAAAGTCTTACTTCCTTAT-GAGA-GCATAGCAGCCAAACTAGA  1093
      |||||||||  |||||||  ||||| |||| ||||||||||||| |||||
seq2  TGAATGCAAGTTCTTACT--CTTATGGAGAGGCATAGCAGCCAACCTAGA  1098

seq1  AGTCACCTGA---TGTCCCCCAGGACTGAGGTAA-GCCACACATGCCCAA  1139
       |||||||||   | |||||  |||||||| ||| |||||||||||||||
seq2  GGTCACCTGAATGTTTCCCCAGGGACTGAGTTAAGGCCACACATGCCCAA  1148

seq1  -AGATTTTTTTCTC  1152
       | |||||||||||
seq2  GAAATTTTTTTCTC  1162


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