BAC Information

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BAC

Clone NameB6Ng01-276H10
Chromosome3 (Build37)
Map Location 90,116,543 - 90,225,324
singlet/doubletdoublet
Overlap geneGatad2b, Slc27a3, Ints3
Upstream geneEfna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b
Downstream geneNpr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276H10.bB6Ng01-276H10.g
ACCGA077239GA077240
length1,1081,181
definitionB6Ng01-276H10.b B6Ng01-276H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,224,224 - 90,225,324)(90,116,543 - 90,117,717)
sequence
gaattcattagtctctggctagagtcatttctgtacccagatactaaagc
taaaaggcaagaaaaagcagttggagaaaaagaaaacacatgactgttaa
agtttcaggtctaagactacgaaggtcaaaattggcatttatttggggta
tggaggagatgggggacaaccaagcccacaggagctctcatccaaagaaa
gaggacctgtagtctgtggcttctgctttgacaaaggaacagaaaacagg
cttaaaatggtagcatgtaacctttagagtaaatgacttaatgtaataat
taagaagactccggacaacagtggagcctggcttcctagagtattgccaa
gaatcagcctggcgttttggtaaacagaagagactccagtgcagaaggct
cagggccaggcgggatactttcagcgtctgttctctttgtaaaactaagt
cttcgtttgttcagattgctccttccagcaactttgtatctttggagtcc
tggcatactgagttaaagtttgtttggatctggctggatccctctgacag
aagggagaagtgtggagttggccgttctctgagcacaggtggtgtggaag
aaaacagatttgttcttgcctactgttgtgttccactctatgtgtctgaa
accactatggcttttgtagctttctccctttggactgcaggccctcctta
aagtgccttggaatttagctctattgtcatttgtttagggataaccaaag
gaaactcattctcagagattctcctggtatcctgacaggaatgcttacat
caacagagtatttgtgggtgtggaacctgctttcttaattctctgaagcc
gcttagggtgcctgtaaaggtaaaaggggaggacagcagcagcagcagca
gctctcgacatagtcttagcttccccggaggaagggcaggcagtgtgaac
tttgtttaagtagaatttctgtttgtgctttttttccctttttttttttt
ttgagatattccagatgactttggggcttctggtttcccagctccaagtg
ttggcattcattcacactggaattgattcattcagaatccttctagagat
taaatgga
gaattcactatgtagaccaggcaagctttttactcacagagatcctctta
agtgctgtgattaaaggtatgcaccacaaatcttgttaaaacactctctg
aggtacaatgtatatatggaaaaaaagttatctgcatagagattcagaat
attacctcttcctagaaatctgtttcttgaaaaaaatttacatttattca
ttcatgtgttaggcatgcatatggcttgttatgcttgtggaggttagagg
acaactcacaggaatggattttctccttctgggattgaatttggatcatt
aggcttggcagcaagtgcccttttctgtttagctgtctcactgacctctg
aaatctttttatgtttcctctattgtcattctatctccagaagagaacac
ccccacccctatccccaccccagacagggtttctctgtgtagctctggct
gttctgaaactcactctgtagaccaggttggcctcgaactcagaaatcct
cctgcctctgcctcccaagtgctaggattaaaggtgtgtgccaccactgc
ctggtgggaaccactttttgctatggtgtgtaaatactctgtgctaacta
tttatacgtgtggagtgcttcctctgggtagtattcatgttcatttgcaa
ggttgagactgttgtacaaaatatccacagatttctttagagcagaataa
tgtctgtttaatagaatgattctcatctgggaacagtttaccctccagtg
gatatttggtattgtatggggaaagggaccttttttttttcttgcagata
gaattggtgttgctattattcatattttgttttctagaggccagaggtac
tgctaaacaatcaacagtacctaggacagctttcttcttcttctaatttt
tttttaaagattatttatacagtgttgtgcctgcatatacacctttcagg
tcagaagagggcaccagatcctcactattaaatggttatgatccacccac
cattactgggaacttgactcagtaccttcatggagagcagcttgctgcac
tttaaccttttgagccatgttcctccagcccctaggcagcttcttacaaa
caaaggatctcttcctcagcttctaaagttagtaggctgagtagaaacgt
ctaatgctagaatatatttgtgaccattata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90224224_90225324
seq2: B6Ng01-276H10.b_46_1153 (reverse)

seq1  TCCATTT-ATCTCTAGA--GA-TCTGAATG-ATCAATT-CAGTGTGAAAT  44
      ||||||| |||||||||  || |||||||| ||||||| ||||||| |||
seq2  TCCATTTAATCTCTAGAAGGATTCTGAATGAATCAATTCCAGTGTG-AAT  49

seq1  GAAATCCCAACACTTGGGAAGCTGGGGAAACCAGA--GCCCAAAGTCATC  92
      | ||| |||||||||||  |||| |||||||||||   ||||||||||||
seq2  G-AATGCCAACACTTGG--AGCT-GGGAAACCAGAAGCCCCAAAGTCATC  95

seq1  TTGGAATATCTCAAAAAAAAAAAAAAAGGGAAAAAAGCACAAACAG-AAT  141
       ||||||||||||||||||||||||| || |||||||||||||||| |||
seq2  -TGGAATATCTCAAAAAAAAAAAAAAGGGAAAAAAAGCACAAACAGAAAT  144

seq1  TCTACTT-AACAAAGTTCACACTGCCTGGCCTTCCTCC-GGGAAGCT-AG  188
      ||||||| |||||||||||||||||||| ||||||||| |||||||| ||
seq2  TCTACTTAAACAAAGTTCACACTGCCTGCCCTTCCTCCGGGGAAGCTAAG  194

seq1  ACTATGTCGAGAGCTGCTGCTGCTGCTGCTGTCCTCCCC-TTTACCTTTA  237
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTATGTCGAGAGCTGCTGCTGCTGCTGCTGTCCTCCCCTTTTACCTTTA  244

seq1  CAGGCACCCTAAGCGGCTTCAGAGAATTAAGAAAGCAGGTTCCACACCCA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACCCTAAGCGGCTTCAGAGAATTAAGAAAGCAGGTTCCACACCCA  294

seq1  CAAATACTCTGTTGATGTAAGCATTCCTGTCAGGATACCAGGAGAATCTC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTCTGTTGATGTAAGCATTCCTGTCAGGATACCAGGAGAATCTC  344

seq1  TGAGAATGAGTTTCCTTTGGTTATCCCTAAACAAATGACAATAGAGCTAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGAGTTTCCTTTGGTTATCCCTAAACAAATGACAATAGAGCTAA  394

seq1  ATTCCAAGGCACTTTAAGGAGGGCCTGCAGTCCAAAGGGAGAAAGCTACA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAGGCACTTTAAGGAGGGCCTGCAGTCCAAAGGGAGAAAGCTACA  444

seq1  AAAGCCATAGTGGTTTCAGACACATAGAGTGGAACACAACAGTAGGCAAG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATAGTGGTTTCAGACACATAGAGTGGAACACAACAGTAGGCAAG  494

seq1  AACAAATCTGTTTTCTTCCACACCACCTGTGCTCAGAGAACGGCCAACTC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCTGTTTTCTTCCACACCACCTGTGCTCAGAGAACGGCCAACTC  544

seq1  CACACTTCTCCCTTCTGTCAGAGGGATCCAGCCAGATCCAAACAAACTTT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCTCCCTTCTGTCAGAGGGATCCAGCCAGATCCAAACAAACTTT  594

seq1  AACTCAGTATGCCAGGACTCCAAAGATACAAAGTTGCTGGAAGGAGCAAT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTATGCCAGGACTCCAAAGATACAAAGTTGCTGGAAGGAGCAAT  644

seq1  CTGAACAAACGAAGACTTAGTTTTACAAAGAGAACAGACGCTGAAAGTAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAAACGAAGACTTAGTTTTACAAAGAGAACAGACGCTGAAAGTAT  694

seq1  CCCGCCTGGCCCTGAGCCTTCTGCACTGGAGTCTCTTCTGTTTACCAAAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCTGGCCCTGAGCCTTCTGCACTGGAGTCTCTTCTGTTTACCAAAA  744

seq1  CGCCAGGCTGATTCTTGGCAATACTCTAGGAAGCCAGGCTCCACTGTTGT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGGCTGATTCTTGGCAATACTCTAGGAAGCCAGGCTCCACTGTTGT  794

seq1  CCGGAGTCTTCTTAATTATTACATTAAGTCATTTACTCTAAAGGTTACAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGTCTTCTTAATTATTACATTAAGTCATTTACTCTAAAGGTTACAT  844

seq1  GCTACCATTTTAAGCCTGTTTTCTGTTCCTTTGTCAAAGCAGAAGCCACA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCATTTTAAGCCTGTTTTCTGTTCCTTTGTCAAAGCAGAAGCCACA  894

seq1  GACTACAGGTCCTCTTTCTTTGGATGAGAGCTCCTGTGGGCTTGGTTGTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGGTCCTCTTTCTTTGGATGAGAGCTCCTGTGGGCTTGGTTGTC  944

seq1  CCCCATCTCCTCCATACCCCAAATAAATGCCAATTTTGACCTTCGTAGTC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTCCTCCATACCCCAAATAAATGCCAATTTTGACCTTCGTAGTC  994

seq1  TTAGACCTGAAACTTTAACAGTCATGTGTTTTCTTTTTCTCCAACTGCTT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCTGAAACTTTAACAGTCATGTGTTTTCTTTTTCTCCAACTGCTT  1044

seq1  TTTCTTGCCTTTTAGCTTTAGTATCTGGGTACAGAAATGACTCTAGCCAG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCCTTTTAGCTTTAGTATCTGGGTACAGAAATGACTCTAGCCAG  1094

seq1  AGACTAATGAATTC  1101
      ||||||||||||||
seq2  AGACTAATGAATTC  1108

seq1: chr3_90116543_90117717
seq2: B6Ng01-276H10.g_65_1245

seq1  GAATTCACTATGTAGACCAGGCAAGCTTTTTACTCACAGAGATCCTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGACCAGGCAAGCTTTTTACTCACAGAGATCCTCTTA  50

seq1  AGTGCTGTGATTAAAGGTATGCACCACAAATCTTGTTAAAACACTCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTGATTAAAGGTATGCACCACAAATCTTGTTAAAACACTCTCTG  100

seq1  AGGTACAATGTATATATGGAAAAAAAGTTATCTGCATAGAGATTCAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAATGTATATATGGAAAAAAAGTTATCTGCATAGAGATTCAGAAT  150

seq1  ATTACCTCTTCCTAGAAATCTGTTTCTTGAAAAAAATTTACATTTATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTCTTCCTAGAAATCTGTTTCTTGAAAAAAATTTACATTTATTCA  200

seq1  TTCATGTGTTAGGCATGCATATGGCTTGTTATGCTTGTGGAGGTTAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGTTAGGCATGCATATGGCTTGTTATGCTTGTGGAGGTTAGAGG  250

seq1  ACAACTCACAGGAATGGATTTTCTCCTTCTGGGATTGAATTTGGATCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCACAGGAATGGATTTTCTCCTTCTGGGATTGAATTTGGATCATT  300

seq1  AGGCTTGGCAGCAAGTGCCCTTTTCTGTTTAGCTGTCTCACTGACCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGCAGCAAGTGCCCTTTTCTGTTTAGCTGTCTCACTGACCTCTG  350

seq1  AAATCTTTTTATGTTTCCTCTATTGTCATTCTATCTCCAGAAGAGAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTTATGTTTCCTCTATTGTCATTCTATCTCCAGAAGAGAACAC  400

seq1  CCCCACCCCTATCCCCACCCCAGACAGGGTTTCTCTGTGTAGCTCTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCTATCCCCACCCCAGACAGGGTTTCTCTGTGTAGCTCTGGCT  450

seq1  GTTCTGAAACTCACTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAAACTCACTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCT  500

seq1  CCTGCCTCTGCCTCCCAAGTGCTAGGATTAAAGGTGTGTGCCACCACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGCCTCCCAAGTGCTAGGATTAAAGGTGTGTGCCACCACTGC  550

seq1  CTGGTGGGAACCACTTTTTGCTATGGTGTGTAAATACTCTGTGCTAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGAACCACTTTTTGCTATGGTGTGTAAATACTCTGTGCTAACTA  600

seq1  TTTATACGTGTGGAGTGCTTCCTCTGGGTAGTATTCATGTTCATTTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACGTGTGGAGTGCTTCCTCTGGGTAGTATTCATGTTCATTTGCAA  650

seq1  GGTTGAGACTGTTGTACAAAATATCCACAGATTTCTTTAGAGCAGAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGACTGTTGTACAAAATATCCACAGATTTCTTTAGAGCAGAATAA  700

seq1  TGTCTGTTTAATAGAATGATTCTCATCTGGGAACAGTTTACCCTCCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTAATAGAATGATTCTCATCTGGGAACAGTTTACCCTCCAGTG  750

seq1  GATATTTGGTATTGTATGGGGAAAGGGACC-TTTTTTTTTCTTGCAGATA  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GATATTTGGTATTGTATGGGGAAAGGGACCTTTTTTTTTTCTTGCAGATA  800

seq1  GAATTGGTGTTGCTATTATTCATATTTTG-TTTCTAGAGGCCAGAGGTAC  848
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTGGTGTTGCTATTATTCATATTTTGTTTTCTAGAGGCCAGAGGTAC  850

seq1  TGCTAAACAATCAACAGTACCTAGGACAGCTTTCTTCTTCTTCTAATTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACAATCAACAGTACCTAGGACAGCTTTCTTCTTCTTCTAATTTT  900

seq1  TTTTTAAAGATTATTTATACAGTGTTGTGCCTGCATATACACC-TTCAGG  947
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTTAAAGATTATTTATACAGTGTTGTGCCTGCATATACACCTTTCAGG  950

seq1  TCAGAAGAGGGCACCAGAT-CTCACTA-TAAATGGTTATGATCCACCCAC  995
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  TCAGAAGAGGGCACCAGATCCTCACTATTAAATGGTTATGATCCACCCAC  1000

seq1  CA-TACTGGGAACTGAACTCAGTACC-TCATGAAGAGCAGC-TGCTGCAC  1042
      || |||||||||||  |||||||||| ||||| |||||||| ||||||||
seq2  CATTACTGGGAACTTGACTCAGTACCTTCATGGAGAGCAGCTTGCTGCAC  1050

seq1  -TTAACC-TTTGAGCCATGT--CTCCAGCCCCTTAGGGCAGCTTTCTAC-  1087
       |||||| ||||||||||||  |||||||||||   ||||||||  ||| 
seq2  TTTAACCTTTTGAGCCATGTTCCTCCAGCCCCT--AGGCAGCTTCTTACA  1098

seq1  AACAAA-GATCTCTT-CTCAGCCTCCCAAAGTTAGTAGGGCTGAGGTTAG  1135
      |||||| |||||||| ||||| || | |||||||||| |||||||  || 
seq2  AACAAAGGATCTCTTCCTCAG-CTTCTAAAGTTAGTA-GGCTGAG--TA-  1143

seq1  GAAACAGTTCTAATTGGCTAGAATATA-TTGT-AGCATTATA  1175
      |||||   ||||||  ||||||||||| |||| | |||||||
seq2  GAAAC--GTCTAAT--GCTAGAATATATTTGTGACCATTATA  1181