BAC Information

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BAC

Clone NameB6Ng01-276N03
Chromosome3 (Build37)
Map Location 67,020,053 - 67,179,924
singlet/doubletdoublet
Overlap geneRsrc1, Mlf1
Upstream geneVeph1, Ptx3, LOC625115, Shox2
Downstream geneGfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426, EG545531, LOC631379
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276N03.bB6Ng01-276N03.g
ACCGA077503GA077504
length8441,027
definitionB6Ng01-276N03.b B6Ng01-276N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,179,082 - 67,179,924)(67,020,053 - 67,021,078)
sequence
gaattctcattttgttggcagtaaaaagggtgggttaaagaacagccggc
ttgatataagctcattacttgataatgtaagttcattcttttcctttatg
cccagatgtgtttactctataaatagtggttgtaaaaataaattagcatg
aatcagtattataattactacaaatttgccttatatttttgataatggtt
gcttggttctgaagaaggctagaaaattgttgaagagagtgactaatggt
ctttcctgagctttttgatgtgtgtctttgagacctgttactatttttga
cctcaaatcttgggttcccagcctttgctcaagtcatccaacagtttaaa
ttacactcccactggacatatttttttaagatactagttacatatcaaat
tacacatttaattaagacattactcattttaatataactaggcatataat
aaggtcagatatgcacagaaaactagataatagtgaaacttagttttaaa
tgtcttcttcccaaggcctcatttatgtcactgtgaatcactcaccattc
cttgttaccagaggtgttcattgcacactctttcttttacccctgcctgc
cccattattgcattgataaaatgagaagccccttcccaagcaaggccagt
tctgctggaggcaggtaaagaaaacaaacagtgtcccatggcaacgtcca
accacttcgaagcagccagctcaactctcctacttagtagtgctgtcaag
gtgacagccttcactatatgaaaacttgttttaaataacttagcacacaa
cctctaatttccagaaagaaggaggaggaggaggaggaggagga

gaattcttggtttactgatactcagtaaatgagtaaattactggtagcat
atgtaaatgctactgacagaccactgaagttaaatcctgatctggaattt
agagtagtttggaagcaaaagaattggctcagtggctaggaccacttgct
ttacagagggcccacagtttggttcccaaaacctttgtgttagctcatga
cgttttctaactccagtgccacatctgatatactcttctggcccagaaag
gaacaaggcatgcccatagtcaatatacatacatgcaggggaaacactca
tacaaaaaataaaaatgagtaaatcttttaaaaatttaacaagtagttat
ggatttcactttttatatgaaacatatgaatgcatataataatttcttca
ttattagtgtttcctgtttagagtactctttaacacgggagtgttaaaga
tgcagcttacaatagaacacttctgtttacattcctgcattcatataagt
gttcctatgccgtcttcattatggaaagcttcagtaatggatgcttacta
ttcagggaatacagggaaaacagttgtttgccacagtaggccaatggatt
gggtactttctttggctgtgatatcagagagaactcatagttacaacttc
tctgtatatagagcaacccatagtatattctaaatcactgaaaggttttt
tttcctcctatagaaatactttttaatttagaatttatagctatataggt
tctcatagaaacagatgtaaaaagtgatggtagggagtggcgggagaatg
caagttctgggaagcgccttccgcgtctttctcagtctttcttcttctag
agcgggaagggaagggaagcgctgcttgggtaatcccgacttgcagtttc
ccaactttcctaacatgacattggacatggaaacttaggaatactgacgt
tcacttagactttggagaatttaatacatttccaagccaacaaaacagct
tcatctcttatagtccttatatattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_67179082_67179924
seq2: B6Ng01-276N03.b_48_891 (reverse)

seq1  TCCTCCTCCTCCTCCTCCTCCTCCTTCTTTCTGG-AATTAGAGGTTGTGT  49
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCTCCTCCTCCTCCTCCTCCTCCTTCTTTCTGGAAATTAGAGGTTGTGT  50

seq1  GCTAAGTTATTTAAAACAAGTTTTCATATAGTGAAGGCTGTCACCTTGAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTTATTTAAAACAAGTTTTCATATAGTGAAGGCTGTCACCTTGAC  100

seq1  AGCACTACTAAGTAGGAGAGTTGAGCTGGCTGCTTCGAAGTGGTTGGACG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTACTAAGTAGGAGAGTTGAGCTGGCTGCTTCGAAGTGGTTGGACG  150

seq1  TTGCCATGGGACACTGTTTGTTTTCTTTACCTGCCTCCAGCAGAACTGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATGGGACACTGTTTGTTTTCTTTACCTGCCTCCAGCAGAACTGGC  200

seq1  CTTGCTTGGGAAGGGGCTTCTCATTTTATCAATGCAATAATGGGGCAGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGGGAAGGGGCTTCTCATTTTATCAATGCAATAATGGGGCAGGC  250

seq1  AGGGGTAAAAGAAAGAGTGTGCAATGAACACCTCTGGTAACAAGGAATGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTAAAAGAAAGAGTGTGCAATGAACACCTCTGGTAACAAGGAATGG  300

seq1  TGAGTGATTCACAGTGACATAAATGAGGCCTTGGGAAGAAGACATTTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGATTCACAGTGACATAAATGAGGCCTTGGGAAGAAGACATTTAAA  350

seq1  ACTAAGTTTCACTATTATCTAGTTTTCTGTGCATATCTGACCTTATTATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTTCACTATTATCTAGTTTTCTGTGCATATCTGACCTTATTATA  400

seq1  TGCCTAGTTATATTAAAATGAGTAATGTCTTAATTAAATGTGTAATTTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGTTATATTAAAATGAGTAATGTCTTAATTAAATGTGTAATTTGA  450

seq1  TATGTAACTAGTATCTTAAAAAAATATGTCCAGTGGGAGTGTAATTTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACTAGTATCTTAAAAAAATATGTCCAGTGGGAGTGTAATTTAAA  500

seq1  CTGTTGGATGACTTGAGCAAAGGCTGGGAACCCAAGATTTGAGGTCAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGATGACTTGAGCAAAGGCTGGGAACCCAAGATTTGAGGTCAAAA  550

seq1  ATAGTAACAGGTCTCAAAGACACACATCAAAAAGCTCAGGAAAGACCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAACAGGTCTCAAAGACACACATCAAAAAGCTCAGGAAAGACCATT  600

seq1  AGTCACTCTCTTCAACAATTTTCTAGCCTTCTTCAGAACCAAGCAACCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTCTCTTCAACAATTTTCTAGCCTTCTTCAGAACCAAGCAACCAT  650

seq1  TATCAAAAATATAAGGCAAATTTGTAGTAATTATAATACTGATTCATGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAAATATAAGGCAAATTTGTAGTAATTATAATACTGATTCATGCT  700

seq1  AATTTATTTTTACAACCACTATTTATAGAGTAAACACATCTGGGCATAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTTTACAACCACTATTTATAGAGTAAACACATCTGGGCATAAA  750

seq1  GGAAAAGAATGAACTTACATTATCAAGTAATGAGCTTATATCAAGCCGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAATGAACTTACATTATCAAGTAATGAGCTTATATCAAGCCGGC  800

seq1  TGTTCTTTAACCCACCCTTTTTACTGCCAACAAAATGAGAATTC  843
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTAACCCACCCTTTTTACTGCCAACAAAATGAGAATTC  844


seq1: chr3_67020053_67021078
seq2: B6Ng01-276N03.g_69_1095

seq1  GAATTCTTGGTTTACTGATACTCAGTAAATGAGTAAATTACTGGTAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTTACTGATACTCAGTAAATGAGTAAATTACTGGTAGCAT  50

seq1  ATGTAAATGCTACTGACAGACCACTGAAGTTAAATCCTGATCTGGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGCTACTGACAGACCACTGAAGTTAAATCCTGATCTGGAATTT  100

seq1  AGAGTAGTTTGGAAGCAAAAGAATTGGCTCAGTGGCTAGGACCACTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGTTTGGAAGCAAAAGAATTGGCTCAGTGGCTAGGACCACTTGCT  150

seq1  TTACAGAGGGCCCACAGTTTGGTTCCCAAAACCTTTGTGTTAGCTCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAGGGCCCACAGTTTGGTTCCCAAAACCTTTGTGTTAGCTCATGA  200

seq1  CGTTTTCTAACTCCAGTGCCACATCTGATATACTCTTCTGGCCCAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTCTAACTCCAGTGCCACATCTGATATACTCTTCTGGCCCAGAAAG  250

seq1  GAACAAGGCATGCCCATAGTCAATATACATACATGCAGGGGAAACACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGGCATGCCCATAGTCAATATACATACATGCAGGGGAAACACTCA  300

seq1  TACAAAAAATAAAAATGAGTAAATCTTTTAAAAATTTAACAAGTAGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAATAAAAATGAGTAAATCTTTTAAAAATTTAACAAGTAGTTAT  350

seq1  GGATTTCACTTTTTATATGAAACATATGAATGCATATAATAATTTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCACTTTTTATATGAAACATATGAATGCATATAATAATTTCTTCA  400

seq1  TTATTAGTGTTTCCTGTTTAGAGTACTCTTTAACACGGGAGTGTTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTGTTTCCTGTTTAGAGTACTCTTTAACACGGGAGTGTTAAAGA  450

seq1  TGCAGCTTACAATAGAACACTTCTGTTTACATTCCTGCATTCATATAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTTACAATAGAACACTTCTGTTTACATTCCTGCATTCATATAAGT  500

seq1  GTTCCTATGCCGTCTTCATTATGGAAAGCTTCAGTAATGGATGCTTACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATGCCGTCTTCATTATGGAAAGCTTCAGTAATGGATGCTTACTA  550

seq1  TTCAGGGAATACAGGGAAAACAGTTGTTTGCCACAGTAGGCCAATGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGAATACAGGGAAAACAGTTGTTTGCCACAGTAGGCCAATGGATT  600

seq1  GGGTACTTTCTTTGGCTGTGATATCAGAGAGAACTCATAGTTACAACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTTTCTTTGGCTGTGATATCAGAGAGAACTCATAGTTACAACTTC  650

seq1  TCTGTATATAGAGCAACCCATAGTATATTCTAAATCACTGAAAGGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATATAGAGCAACCCATAGTATATTCTAAATCACTGAAAGGTTTTT  700

seq1  TTTCCTCCTATAGAAATACTTTTTAATTTAGAATTTATAGCTATATAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTATAGAAATACTTTTTAATTTAGAATTTATAGCTATATAGGT  750

seq1  TCTCATAGAAACAGATGTAAAAAGTGATGGTAGGGAGTGGCGGGAG-ATG  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTCATAGAAACAGATGTAAAAAGTGATGGTAGGGAGTGGCGGGAGAATG  800

seq1  CAAG-TCTGGGAAGCGCC-TCCGCG-CCTTCTCAGTCTTCCT--CTCTAG  844
      |||| ||||||||||||| |||||| | ||||||||||| ||   |||||
seq2  CAAGTTCTGGGAAGCGCCTTCCGCGTCTTTCTCAGTCTTTCTTCTTCTAG  850

seq1  AGCGGGAAGGGAAGGGAAGCGCTGCTTGGGTAATCCCGACCTGCAGTTTC  894
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCGGGAAGGGAAGGGAAGCGCTGCTTGGGTAATCCCGACTTGCAGTTTC  900

seq1  CCAAC-TTCCTAACATGGACA-TGGACATGGAAACATAGGAAATACAGAC  942
      ||||| |||||||||| |||| ||||||||||||| |||| ||||| |||
seq2  CCAACTTTCCTAACAT-GACATTGGACATGGAAACTTAGG-AATACTGAC  948

seq1  G-TCAC-TAGACCTT-GAGAAATTTATACA-TGCAAAGGCACACAAAACA  988
      | |||| ||||| || ||||| || ||||| | | ||| || ||||||||
seq2  GTTCACTTAGACTTTGGAGAATTTAATACATTTCCAAGCCA-ACAAAACA  997

seq1  GCTTTTCTTTCCTCTTTTATAGTCCCTTAATATATTTA  1026
      ||      ||| ||| |||||||||  | |||||||||
seq2  GC------TTCATCTCTTATAGTCC--TTATATATTTA  1027


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