BAC Information

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BAC

Clone NameB6Ng01-277A22
Chromosome3 (Build37)
Map Location 45,984,213 - 45,985,350
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989, LOC545517, LOC383849
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277A22.bB6Ng01-277A22.g
ACCGA077678GA077679
length1,1791,120
definitionB6Ng01-277A22.b B6Ng01-277A22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaata
ttcagcatccttaatcatcagagaaatgcaaatgtgaaatgtgagattcc
acctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcaga
tgctggcacggatgtagagaaagagaaacactcctccattgttggtggga
ttgcaagcttgtacaaccactctggaaatcagtctggtggttcctcagaa
aactggatatagtactactggaggatcctgcaatacctctcctgggcata
tatccagaagatgttccaactggtaagaaagaaacatgttccactatgtt
caaagcagccttgtttataatagccagaagctagaaagaacccagatgcc
cctcaaaagaggaattgataaagaaaatgtggtacatttatacaatggag
tactactcagctattaagaggaatgaatttatgaaattcctaggcaaatg
gatggatctgtagggtatcatcctgagtgaggtaacccaatcacaaagga
actcacacaatatgtactcactgataagtggatattagcccagaaactta
ggatacccaagatataagatacaatttgctaaacgcatgaaactcaagaa
gaatgaacaccaaagtgtggacactttgccccttcttagaattggaaaca
aaacacccatggaaggagttacagagacaaagtttggagctgtgtcaaaa
ggatggaccatctagagcctgccatatccagggttccatcccataatcag
cttccaaacactgacaccattgtatatactagtaagattttgctgaaagg
acccagatatagctgtctcttgtgagactatgccggggccctagcaaaca
cataagtggatgctcacagtcagctattggatggatcacagggcccccaa
tggaggagctagagaaagtacccaagagctaatgggatctgcaacctata
ggtagaaaaatattatgaactaatcagtacccgggagctctgactctagc
tgcatatgtatcaaaggatgctagtcggcatcactgggaaagaagaagac
cattggactgccaacttttaatgccagttacaggaatggccaggtcaaag
ttggaatgtttgtggtttagggcgcacta
gaattcttgatatttggacttgtttctatatattaaaatcctacaggatt
tctacaaattctgatctgaatgtttatcctctttctagtaaggtcaacat
ttgtgtcaattaagagataactcacattcagaaatgcatatatgacagaa
caaacatttctgcaaaattcatttttggtggtgatctgaaagtaggctat
aaaacagtagtaaggtttgggtatctgctgtggccataccctctcagtgg
tattgaactggccatatcctctcagtggtatcgaactgcttccttggttg
cttttattgggtcgacaacaaaatagcactagcaggtattagatttaaaa
aatggtatatattaatgtatatattgtttatactaatctttctagaagca
cttaaacttactgaagaagtaagctaactcaaaaagtcttcagatttaat
tacttctgtttacatttttttttctcacacaagaccctagggtgatatat
ttatatatataacttaaagaataagagcatatagaaagaatattgtccat
atgaatatatatgactgacagtttgtgaaaatataatttcaaagttaaac
ctttcaagattggcccatccctcttcaaatttgttaaacatcaatttatt
ttcagtaagcatatgttgcagtatgaaggtttgtttctctgtaaaatcca
tgttgaaattctagtcacaatgttgatgagattaggaggaagaggctttg
agagagcaagaggaaaggaggtgccaaggcccagcctcggcataaggagc
ttcctgagaatgctgggacaggagcagcattaatccagtaatgacataga
tttcagtaggggatgccagacgctggttccagtgctttttctgtttctga
ggattctcctcattcttccttctcctttctcattcttaaatttattattt
cctatcactagcctctctctttaatcttttgctttctcattatctctctt
tttttttttctcccaaccagagtctgacccagtctttatttactagtaaa
taaaatgttcagggatttaacactgttataactttagaatcctcgagtta
catagcgtatgaatcctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45984213_45985350
seq2: B6Ng01-277A22.g_65_1184

seq1  GAATTCTTGATATTTGGACTTGTTTCTATATATTAAAATCCTACAGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATATTTGGACTTGTTTCTATATATTAAAATCCTACAGGATT  50

seq1  TCTACAAATTCTGATCTGAATGTTTATCCTCTTTCTAGTAAGGTCAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAATTCTGATCTGAATGTTTATCCTCTTTCTAGTAAGGTCAACAT  100

seq1  TTGTGTCAATTAAGAGATAACTCACATTCAGAAATGCATATATGACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCAATTAAGAGATAACTCACATTCAGAAATGCATATATGACAGAA  150

seq1  CAAACATTTCTGCAAAATTCATTTTTGGTGGTGATCTGAAAGTAGGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTTCTGCAAAATTCATTTTTGGTGGTGATCTGAAAGTAGGCTAT  200

seq1  AAAACAGTAGTAAGGTTTGGGTATCTGCTGTGGCCATACCCTCTCAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTAGTAAGGTTTGGGTATCTGCTGTGGCCATACCCTCTCAGTGG  250

seq1  TATTGAACTGGCCATATCCTCTCAGTGGTATCGAACTGCTTCCTTGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAACTGGCCATATCCTCTCAGTGGTATCGAACTGCTTCCTTGGTTG  300

seq1  CTTTTATTGGGTCGACAACAAAATAGCACTAGCAGGTATTAGATTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTGGGTCGACAACAAAATAGCACTAGCAGGTATTAGATTTAAAA  350

seq1  AATGGTATATATTAATGTATATATTGTTTATACTAATCTTTCTAGAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTATATATTAATGTATATATTGTTTATACTAATCTTTCTAGAAGCA  400

seq1  CTTAAACTTACTGAAGAAGTAAGCTAACTCAAAAAGTCTTCAGATTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTTACTGAAGAAGTAAGCTAACTCAAAAAGTCTTCAGATTTAAT  450

seq1  TACTTCTGTTTACATTTTTTTTTCTCACACAAGACCCTAGGGTGATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGTTTACATTTTTTTTTCTCACACAAGACCCTAGGGTGATATAT  500

seq1  TTATATATATAACTTAAAGAATAAGAGCATATAGAAAGAATATTGTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATATAACTTAAAGAATAAGAGCATATAGAAAGAATATTGTCCAT  550

seq1  ATGAATATATATGACTGACAGTTTGTGAAAATATAATTTCAAAGTTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATATATGACTGACAGTTTGTGAAAATATAATTTCAAAGTTAAAC  600

seq1  CTTTCAAGATTGGCCCATCCCTCTTCAAATTTGTTAAACATCAATTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGATTGGCCCATCCCTCTTCAAATTTGTTAAACATCAATTTATT  650

seq1  TTCAGTAAGCATATGTTGCAGTATGAAGGTTTGTTTCTCTGTAAAATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAAGCATATGTTGCAGTATGAAGGTTTGTTTCTCTGTAAAATCCA  700

seq1  TGTTGAAATTCTAGTCACAATGTTGATGAGATTAGGAGGAAGAGGCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAATTCTAGTCACAATGTTGATGAGATTAGGAGGAAGAGGCTTTG  750

seq1  AGAGAGCAAGAGGAAAGGAGGTGCCAAGGCCCAGCCTCGGCATAAGGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAAGAGGAAAGGAGGTGCCAAGGCCCAGCCTCGGCATAAGGAGC  800

seq1  TTCCTGAGAATGCTGGGACAGGAGCAGCATTAATCCAGTAATGACATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGAATGCTGGGACAGGAGCAGCATTAATCCAGTAATGACATAGA  850

seq1  -TTCAGTAGGGGATGCCAGACGCTGGTTCCAGTGCTTTTTCTGTTTCTGA  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTAGGGGATGCCAGACGCTGGTTCCAGTGCTTTTTCTGTTTCTGA  900

seq1  GGATTCTCCTCATTCTTCCTTCTCCTTTCTCATTCTTAATTTTATTATTT  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGATTCTCCTCATTCTTCCTTCTCCTTTCTCATTCTTAAATTTATTATTT  950

seq1  CCTATTCACTAGCCTTCTCTCCTTTTAATCTTTTGCTTTCTCCATTATTC  999
      |||| ||||||||| ||||||  |||||||||||||||||| ||||| ||
seq2  CCTA-TCACTAGCC-TCTCTC--TTTAATCTTTTGCTTTCT-CATTA-TC  994

seq1  TCTTCTTTTTTTTTTCTCCCAACCAGAGTTCCTGAACCCAGTCTTTTATT  1049
      |||  ||||||||||||||||||||||||  ||| |||||||| ||||||
seq2  TCTCTTTTTTTTTTTCTCCCAACCAGAGT--CTG-ACCCAGTC-TTTATT  1040

seq1  TACTAAGGTAAATAAAAATGTTCAAGGATTTAACACTGTTAATAACTTTT  1099
      |||||  |||||| |||||||||| ||||||||||||||| ||||| |||
seq2  TACTA--GTAAAT-AAAATGTTCAGGGATTTAACACTGTT-ATAAC-TTT  1085

seq1  AGAAATCCTCAAATTTACATAAACTATATGAATTCTAGA  1138
      || |||||||  | ||||||  |   ||||||| |||||
seq2  AG-AATCCTC-GAGTTACAT--AGCGTATGAATCCTAGA  1120