BAC Information

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BAC

Clone NameB6Ng01-277E15
Chromosome3 (Build37)
Map Location 29,346,383 - 29,445,441
singlet/doubletdoublet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1, Mds1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277E15.bB6Ng01-277E15.g
ACCGA077848GA077849
length1,1411,131
definitionB6Ng01-277E15.b B6Ng01-277E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,444,292 - 29,445,441)(29,346,383 - 29,347,503)
sequence
gaattctctccacactctagagtacaacaaatggatgtttaggcttataa
tattcaatacaagtatcatattgagcaaagagacaaaatgtatccggaat
gaggtgcctttgtttcagcaagaagtatgttctcagacccagagaaactc
tttagtgtgctctagatgtctataccacggctggaatatacaattctatt
ttatatactattaaattagaagaatttacaaacttaaacaattctgttca
tacatagttccagaatgcttggcagtttttaaataaaatctctgtagaga
taccaatgttgtcttggtatgaccattaaaatttttataagcagaggtgt
gcttactgattgctggatctaaagatacgatccaatcactcagaatggct
tcagaggccacaaataattcatttgactaatatttcttaagtctgcacac
taccatttgcatgttattgaagatttaatgaaaaattcataaaggacttg
attacactaatcatttgggttgtattgcacctttccttatcaacctggat
acaataatgttattaaaacttgcctacatttcttccatgtttgtggtact
cttacagacagcctattttactgttctagttcagggataagaattagcag
atgtactactagtaaatgagagaaatgagtcaatttaatgcattagttca
cgtttgatatttttctagcatacttgtggtttatccaagtacaaacagct
aaatatgtctagagtgttcgggggtgcacacagcattcctgtctgcccct
gcccctagtcgatgcactctgcttaggttgtgttggataaatctacttgt
ggaaacttatagtcctttcatactgtccactgtcacaatctgcctaactc
aaaagtcctcctcattctctttctgccatcttgttccaccttcttctgta
agagaggtagtatataggaacttgccctttctaatttcaggatatttata
aacatgtcttgttttgtcatatagttttaactaaacagtaaaatttgggt
ttagtattgtttaacaaactgcatgacttcttaaggtcatagagggtttg
ttgtttacctgtgtgtggtcttctgaggatgtgctcatgtg

gaattcatgatcctgtgtaaagcaggagataagattttagtacctgaagg
cagagtgagctttatgtgaggcaactgtaagatgatctgggagcagatag
tgcaggcaagcaagtagtctatctctaggttgcaaggttttggggaacta
cagggacagcacagagtttcaggttaaacactagcccaggtatagtcttt
actgacaaggaaactgttccctactcttagagaacactctcttcttctct
tccatgcctgtactcaaacacaactaccttttggggggatataatatata
tgtagttttgagaaacttcactgaatttgaaattgtgtgtgtgtgtgtgt
gtgtatgtatatataaaacctcccactgtgcaactgtgttcttgtgtata
cttgaccaaaggttcctgattattatgctaccattccagtatgtaaaaaa
aaaaattcagtactattatgattttgtttcttgatatagtctatagtcat
caaatcataccgaagaaaaagagaaagaaaaggagagaaaggaaagggaa
agaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaac
caaacaacattcagtttgttgacatgacacatccataaatttcctatgtt
atctatgaaatgtcataatcctgtttgtcctaagaaaactcttttcattc
tgtcttaattaaatctttcatacaagcagtttcctgccagctataatcca
ttcattcaggtgtgaaagactggaaactatttacatattcacaaccctga
tagctatgtctgggataaaataaatttatttctcagttgtctgggctctc
cagatattacagttgctgttgcgtagtcaagctttctcctgcaagactca
ttttaggagcacttctgaaacatgccagaaatataatgacaatagaatat
gagctcttggggtaaaggctgcgttttgaatttggtttctgttattggct
ctgaaagtgctgcatggtgccttaaagctctttataaatatgtaaataaa
aaaataatgattaacctggaactagaataaaagaactctttccttataaa
tgcggagtctaatgtgagaaaaaataagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_29444292_29445441
seq2: B6Ng01-277E15.b_43_1183 (reverse)

seq1  CACATGAGCACTATCCTACAGAAAGACACACACACA-GTAAACAAACAAA  49
      ||||||||||| ||||| ||| ||||| |||||||| |||||||   | |
seq2  CACATGAGCAC-ATCCT-CAG-AAGAC-CACACACAGGTAAACA---ACA  43

seq1  AACCCTCTATGACCTTAAG-AGTCATGCAGTTTTGTTAAACAATACTAAA  98
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  AACCCTCTATGACCTTAAGAAGTCATGCAG-TTTGTTAAACAATACTAAA  92

seq1  ACCAAATTTTACTGTTTAGTTAAAACTATATGACAAAAC-AGACATGTTT  147
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCAAATTTTACTGTTTAGTTAAAACTATATGACAAAACAAGACATGTTT  142

seq1  ATAAAATATTCCTGAAATTAGAAA-GGCAAGTTCCTAATATACTACCTCT  196
      || ||||| ||||||||||||||| ||||||||||| |||||||||||| 
seq2  AT-AAATA-TCCTGAAATTAGAAAGGGCAAGTTCCT-ATATACTACCTC-  188

seq1  TCTTACAGAAGAAGGTGGAACAAGATGGCAGAAAGAGAATGAGGAGGACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGAAGAAGGTGGAACAAGATGGCAGAAAGAGAATGAGGAGGACT  238

seq1  TTTGAGTTAGGCAGATTTGTGACAGTGGACAGTATGAAAGGACTATAAGT  296
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTAGGCAGA-TTGTGACAGTGGACAGTATGAAAGGACTATAAGT  287

seq1  TTCCACAAGTAGATTTATCCAACACAACCTAAGCAGAGTGCATCGACTAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAGTAGATTTATCCAACACAACCTAAGCAGAGTGCATCGACTAG  337

seq1  GGGCAGGGGCAGACAGGAATGCTGTGTGCACCCCCGAACACTCTAGACAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGGCAGACAGGAATGCTGTGTGCACCCCCGAACACTCTAGACAT  387

seq1  ATTTAGCTGTTTGTACTTGGATAAACCACAAGTATGCTAGAAAAATATCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTGTTTGTACTTGGATAAACCACAAGTATGCTAGAAAAATATCA  437

seq1  AACGTGAACTAATGCATTAAATTGACTCATTTCTCTCATTTACTAGTAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGAACTAATGCATTAAATTGACTCATTTCTCTCATTTACTAGTAGT  487

seq1  ACATCTGCTAATTCTTATCCCTGAACTAGAACAGTAAAATAGGCTGTCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGCTAATTCTTATCCCTGAACTAGAACAGTAAAATAGGCTGTCTG  537

seq1  TAAGAGTACCACAAACATGGAAGAAATGTAGGCAAGTTTTAATAACATTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTACCACAAACATGGAAGAAATGTAGGCAAGTTTTAATAACATTA  587

seq1  TTGTATCCAGGTTGATAAGGAAAGGTGCAATACAACCCAAATGATTAGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCCAGGTTGATAAGGAAAGGTGCAATACAACCCAAATGATTAGTG  637

seq1  TAATCAAGTCCTTTATGAATTTTTCATTAAATCTTCAATAACATGCAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAGTCCTTTATGAATTTTTCATTAAATCTTCAATAACATGCAAAT  687

seq1  GGTAGTGTGCAGACTTAAGAAATATTAGTCAAATGAATTATTTGTGGCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGTGCAGACTTAAGAAATATTAGTCAAATGAATTATTTGTGGCCT  737

seq1  CTGAAGCCATTCTGAGTGATTGGATCGTATCTTTAGATCCAGCAATCAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCATTCTGAGTGATTGGATCGTATCTTTAGATCCAGCAATCAGT  787

seq1  AAGCACACCTCTGCTTATAAAAATTTTAATGGTCATACCAAGACAACATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACCTCTGCTTATAAAAATTTTAATGGTCATACCAAGACAACATT  837

seq1  GGTATCTCTACAGAGATTTTATTTAAAAACTGCCAAGCATTCTGGAACTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTCTACAGAGATTTTATTTAAAAACTGCCAAGCATTCTGGAACTA  887

seq1  TGTATGAACAGAATTGTTTAAGTTTGTAAATTCTTCTAATTTAATAGTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAACAGAATTGTTTAAGTTTGTAAATTCTTCTAATTTAATAGTAT  937

seq1  ATAAAATAGAATTGTATATTCCAGCCGTGGTATAGACATCTAGAGCACAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGAATTGTATATTCCAGCCGTGGTATAGACATCTAGAGCACAC  987

seq1  TAAAGAGTTTCTCTGGGTCTGAGAACATACTTCTTGCTGAAACAAAGGCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTTTCTCTGGGTCTGAGAACATACTTCTTGCTGAAACAAAGGCA  1037

seq1  CCTCATTCCGGATACATTTTGTCTCTTTGCTCAATATGATACTTGTATTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCCGGATACATTTTGTCTCTTTGCTCAATATGATACTTGTATTG  1087

seq1  AATATTATAAGCCTAAACATCCATTTGTTGTACTCTAGAGTGTGGAGAGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATAAGCCTAAACATCCATTTGTTGTACTCTAGAGTGTGGAGAGA  1137

seq1  ATTC  1150
      ||||
seq2  ATTC  1141


seq1: chr3_29346383_29347503
seq2: B6Ng01-277E15.g_67_1197

seq1  GAATTCATGATCCTGTGTAAAGCAGGAGATAAGATTTTAGTACCTGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATCCTGTGTAAAGCAGGAGATAAGATTTTAGTACCTGAAGG  50

seq1  CAGAGTGAGCTTTATGTGAGGCAACTGTAAGATGATCTGGGAGCAGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGCTTTATGTGAGGCAACTGTAAGATGATCTGGGAGCAGATAG  100

seq1  TGCAGGCAAGCAAGTAGTCTATCTCTAGGTTGCAAGGTTTTGGGGAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAAGCAAGTAGTCTATCTCTAGGTTGCAAGGTTTTGGGGAACTA  150

seq1  CAGGGACAGCACAGAGTTTCAGGTTAAACACTAGCCCAGGTATAGTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAGCACAGAGTTTCAGGTTAAACACTAGCCCAGGTATAGTCTTT  200

seq1  ACTGACAAGGAAACTGTTCCCTACTCTTAGAGAACACTCTCTTCTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAAGGAAACTGTTCCCTACTCTTAGAGAACACTCTCTTCTTCTCT  250

seq1  TCCATGCCTGTACTCAAACACAACTACCTTTTGGGGGGATATAATATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCTGTACTCAAACACAACTACCTTTTGGGGGGATATAATATATA  300

seq1  TGTAGTTTTGAGAAACTTCACTGAATTTGAAATTGTGTGTGTGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTTGAGAAACTTCACTGAATTTGAAATTGTGTGTGTGTGTGTGT  350

seq1  GTGTATGTATATATAAAACCTCCCACTGTGCAACTGTGTTCTTGTGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTATATATAAAACCTCCCACTGTGCAACTGTGTTCTTGTGTATA  400

seq1  CTTGACCAAAGGTTCCTGATTATTATGCTACCATTCCAGTATGTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCAAAGGTTCCTGATTATTATGCTACCATTCCAGTATGTAAAAAA  450

seq1  AAAAATTCAGTACTATTATGATTTTGTTTCTTGATATAGTCTATAGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCAGTACTATTATGATTTTGTTTCTTGATATAGTCTATAGTCAT  500

seq1  CAAATCATACCGAAGAAAAAGAGAAAGAAAAGGAGAGAAAGGAAAGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATACCGAAGAAAAAGAGAAAGAAAAGGAGAGAAAGGAAAGGGAA  550

seq1  AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAC  600

seq1  CAAACAACATTCAGTTTGTTGACATGACACATCCATAAATTTCCTATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACATTCAGTTTGTTGACATGACACATCCATAAATTTCCTATGTT  650

seq1  ATCTATGAAATGTCATAATCCTGTTTGTCCTAAGAAAACTCTTTTCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGAAATGTCATAATCCTGTTTGTCCTAAGAAAACTCTTTTCATTC  700

seq1  TGTCTTAATTAAATCTTTCATACAAGCAGTTTCCTGCCAGCTATAATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAATTAAATCTTTCATACAAGCAGTTTCCTGCCAGCTATAATCCA  750

seq1  TTCATTCAGGTGTGAAAGACTGGAAACTATTTACATATTCACAACCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCAGGTGTGAAAGACTGGAAACTATTTACATATTCACAACCCTGA  800

seq1  TAGCTATGTCTGGGATAAAATAAATTTATTTCTCAGTTGTCTGGGCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGTCTGGGATAAAATAAATTTATTTCTCAGTTGTCTGGGCTCTC  850

seq1  CAGATATTACAGTTGCTGTTGCGTAGTCAAGCTTTCTCCTGCAAGACTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTACAGTTGCTGTTGCGTAGTCAAGCTTTCTCCTGCAAGACTCA  900

seq1  TTT--AGAGCACTTCTGAAACATGCCAGAAATAT-ATGACAATAGAATAT  947
      |||   |||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTTAGGAGCACTTCTGAAACATGCCAGAAATATAATGACAATAGAATAT  950

seq1  GAGCTCTTGGGGTAAAGGCTGCGTTTTGATTTTGG-TTCTGTTTATTGCT  996
      ||||||||||||||||||||||||||||| ||||| |||||||  | |||
seq2  GAGCTCTTGGGGTAAAGGCTGCGTTTTGAATTTGGTTTCTGTTATTGGCT  1000

seq1  CTGAAAGTGCTGCAT-GTGCCTT-AAGCTCTTTATAAATATGTAAATAAA  1044
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  CTGAAAGTGCTGCATGGTGCCTTAAAGCTCTTTATAAATATGTAAATAAA  1050

seq1  AATAAAATGATTAAC--TGAACTAGAATAAAAGAAACTCTTT-CTTATAA  1091
      || | ||||||||||   ||||||||||||||| |||||||| |||||||
seq2  AAAATAATGATTAACCTGGAACTAGAATAAAAG-AACTCTTTCCTTATAA  1099

seq1  AAG-GGAGTTTAAATGTGAG--AAAATAAGTGG  1121
      | | ||||| | ||||||||  |||||||||||
seq2  ATGCGGAGTCT-AATGTGAGAAAAAATAAGTGG  1131


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