BAC Information

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BAC

Clone NameB6Ng01-277I05
Chromosome3 (Build37)
Map Location 66,731,446 - 66,887,234
singlet/doubletdoublet
Overlap geneShox2, Rsrc1
Upstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3, LOC625115
Downstream geneMlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277I05.bB6Ng01-277I05.g
ACCGA078012GA078013
length1,1091,136
definitionB6Ng01-277I05.b B6Ng01-277I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,886,136 - 66,887,234)(66,731,446 - 66,732,586)
sequence
gaattcatactacaatcattcagatattccaggtaaaagtgtatctcgct
ttgccactgttacattttcttttgctttgtggtttatacttgtatacttt
aagttccatcagtaagtatatcatagatatgcttaagctgggttgataag
gcaaaggttctaagcctgaagaaacataagcacgtggattactttctcat
atatgtaaagcacctaggttacacagcacaagttcaaacacttgtgattg
gattatatatccagaatggactaagaattccatcctaattataataatct
ggagtcttttcttctcttcacctatacattttaaaaagtcatctgaaaaa
aggaagctactgaagcactaataaaataaatttcatgctgtaggacttac
ttgtaaatagaattaaataagaagtgttacatgttgttattttaactcaa
taatttttttagagaatatatacttcaagaaacatgcaagccctgacctt
cttttattcttaataaaatttacccaaagagttggaacaggaagcttctt
ggagagaacttagtttgcatactgctatagagttactgaatgtttcaact
cacccgcgtttgatgctgtgcacttctttgtctttgcctttatccttctc
cttttctcttttctctttgtcccggactttacgtctgtctctgtccctgg
acctgctacgggttcttctgtgactggatctttcactgcttctactatgt
gagcgtggacgaggccttgacctggacctacaataaacagattgtattaa
atagatttagtctgccttgaatttaaaatgcaattgacctaaattacttt
aaagtactcagtttcaactcttagccccaaaattaattgtgtaaagcaag
aatataaatgattctctacacatgatcacttttatgtgattttatttctc
tacacatgtatcacgtttatatacaattatatgcagatatatagacagtg
tcaattttcaagggaattaagctttcaatctaaatgttaaatattaggaa
aatttggagaatgtaaggtaaataaggatataaagagttaccatgtgggt
ccgtcagct

gaattcacactgtactcagttgccttcagtttttttgttttattgtggtt
ttgtttgcttcattttgcttttgtttttgttatttggtctgggggtggaa
ctttgtaaagtgtcccctctcctcattaacatatccattagtactgggtc
tcacttggttacccaggctggccttcttgtccatctgcctcacaccacac
tcttgagtagctggaatgtcaggcttataccaccacatcaagccttacac
ctataatcattctttaagaactaatttgtttttaaagcagcagtacaaaa
gtcaataaacacaatagtgtgacaattcttccataatcagcacattcggc
aaacccttgggagagaagcagggatgtctgtggcacttgctctgtcactc
agctcaagaggggcgggacatatttgaagttacatttaaacccataacat
gatttaaaatctaagaaaaatagaacttttattcaaaagtaatttaatgc
tttttaaaattattttttaggttattttattttctgtgcataaatgtttt
gcctacctgtacataaatgcattacatgcgtgcctgctcctgctgccaca
gaggtagggcctagattcaatccccagcactacacattcaaaaataagaa
aatttattgacatcaaattattcatgggcccatgacatggtatagaggta
catgcttcgaagcttgatgacctgagtacaatccttgggaaccacagggt
agaaggagaaaatcagctgctgctgttctgtgacttctgtgcatgcacca
ccccacataatgcacagaaaataagaaccatagagacattttaacccagc
aacatggatgctctggctaggggtcatatcaaaagaccttgtaggtctgt
gtgatccagctgaaatgacacaccctttaatccttctaactgggaataca
gatatgcccttagtacacagtttgtagaacggagcaactgtgtttcgaag
gatagacaaaggaacggatcagagaattattttgtcagatgagtcagaga
tagggatacagtcactcttagaaacaggatatgaaaggaaagtaactagg
atgggctgggggagtttcctggcaacaggtttacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_66886136_66887234
seq2: B6Ng01-277I05.b_45_1153 (reverse)

seq1  AGCTG-CGGACCCACATGGT-ACTCTTT-TATCC-TATT--ACTTACA-T  43
      ||||| |||||||||||||| ||||||| ||||| ||||   |||||| |
seq2  AGCTGACGGACCCACATGGTAACTCTTTATATCCTTATTTACCTTACATT  50

seq1  CTCAAAATTTTCCT-ATATTT-ACATTTAGATTG-AAGCTTAATTTCCTT  90
      ||| |||||||||| |||||| |||||||||||| |||||||||| ||||
seq2  CTCCAAATTTTCCTAATATTTAACATTTAGATTGAAAGCTTAATTCCCTT  100

seq1  GAAAATTGACACTGTCTATATATCTGCATATAATTGTATATAAACGTGAT  140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGACACTGTCTATATATCTGCATATAATTGTATATAAACGTGAT  150

seq1  ACATGTGTAGAGAAATAAAATCACATAAAAGTGATCATGTGTAGAGAATC  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTAGAGAAATAAAATCACATAAAAGTGATCATGTGTAGAGAATC  200

seq1  ATTTATATTCTTGCTTTACACAATTAATTTTGGGGCTAAGAGTTGAAACT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTCTTGCTTTACACAATTAATTTTGGGGCTAAGAGTTGAAACT  250

seq1  GAGTACTTTAAAGTAATTTAGGTCAATTGCATTTTAAATTCAAGGCAGAC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTTAAAGTAATTTAGGTCAATTGCATTTTAAATTCAAGGCAGAC  300

seq1  TAAATCTATTTAATACAATCTGTTTATTGTAGGTCCAGGTCAAGGCCTCG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTATTTAATACAATCTGTTTATTGTAGGTCCAGGTCAAGGCCTCG  350

seq1  TCCACGCTCACATAGTAGAAGCAGTGAAAGATCCAGTCACAGAAGAACCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGCTCACATAGTAGAAGCAGTGAAAGATCCAGTCACAGAAGAACCC  400

seq1  GTAGCAGGTCCAGGGACAGAGACAGACGTAAAGTCCGGGACAAAGAGAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGGTCCAGGGACAGAGACAGACGTAAAGTCCGGGACAAAGAGAAA  450

seq1  AGAGAAAAGGAGAAGGATAAAGGCAAAGACAAAGAAGTGCACAGCATCAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGGAGAAGGATAAAGGCAAAGACAAAGAAGTGCACAGCATCAA  500

seq1  ACGCGGGTGAGTTGAAACATTCAGTAACTCTATAGCAGTATGCAAACTAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGGGTGAGTTGAAACATTCAGTAACTCTATAGCAGTATGCAAACTAA  550

seq1  GTTCTCTCCAAGAAGCTTCCTGTTCCAACTCTTTGGGTAAATTTTATTAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTCCAAGAAGCTTCCTGTTCCAACTCTTTGGGTAAATTTTATTAA  600

seq1  GAATAAAAGAAGGTCAGGGCTTGCATGTTTCTTGAAGTATATATTCTCTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAGAAGGTCAGGGCTTGCATGTTTCTTGAAGTATATATTCTCTA  650

seq1  AAAAAATTATTGAGTTAAAATAACAACATGTAACACTTCTTATTTAATTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTATTGAGTTAAAATAACAACATGTAACACTTCTTATTTAATTC  700

seq1  TATTTACAAGTAAGTCCTACAGCATGAAATTTATTTTATTAGTGCTTCAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACAAGTAAGTCCTACAGCATGAAATTTATTTTATTAGTGCTTCAG  750

seq1  TAGCTTCCTTTTTTCAGATGACTTTTTAAAATGTATAGGTGAAGAGAAGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCTTTTTTCAGATGACTTTTTAAAATGTATAGGTGAAGAGAAGA  800

seq1  AAAGACTCCAGATTATTATAATTAGGATGGAATTCTTAGTCCATTCTGGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCCAGATTATTATAATTAGGATGGAATTCTTAGTCCATTCTGGA  850

seq1  TATATAATCCAATCACAAGTGTTTGAACTTGTGCTGTGTAACCTAGGTGC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATCCAATCACAAGTGTTTGAACTTGTGCTGTGTAACCTAGGTGC  900

seq1  TTTACATATATGAGAAAGTAATCCACGTGCTTATGTTTCTTCAGGCTTAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATATATGAGAAAGTAATCCACGTGCTTATGTTTCTTCAGGCTTAG  950

seq1  AACCTTTGCCTTATCAACCCAGCTTAAGCATATCTATGATATACTTACTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGCCTTATCAACCCAGCTTAAGCATATCTATGATATACTTACTG  1000

seq1  ATGGAACTTAAAGTATACAAGTATAAACCACAAAGCAAAAGAAAATGTAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTTAAAGTATACAAGTATAAACCACAAAGCAAAAGAAAATGTAA  1050

seq1  CAGTGGCAAAGCGAGATACACTTTTACCTGGAATATCTGAATGATTGTAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCAAAGCGAGATACACTTTTACCTGGAATATCTGAATGATTGTAG  1100

seq1  TATGAATTC  1099
      |||||||||
seq2  TATGAATTC  1109


seq1: chr3_66731446_66732586
seq2: B6Ng01-277I05.g_67_1202

seq1  GAATTCACACTGTACTCAGTTGCCTTCAGTTTTTTTGTTTTATTGTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGTACTCAGTTGCCTTCAGTTTTTTTGTTTTATTGTGGTT  50

seq1  TTGTTTGCTTCATTTTGCTTTTGTTTTTGTTATTTGGTCTGGGGGTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTTCATTTTGCTTTTGTTTTTGTTATTTGGTCTGGGGGTGGAA  100

seq1  CTTTGTAAAGTGTCCCCTCTCCTCATTAACATATCCATTAGTACTGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAAAGTGTCCCCTCTCCTCATTAACATATCCATTAGTACTGGGTC  150

seq1  TCACTTGGTTACCCAGGCTGGCCTTCTTGTCCATCTGCCTCACACCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGGTTACCCAGGCTGGCCTTCTTGTCCATCTGCCTCACACCACAC  200

seq1  TCTTGAGTAGCTGGAATGTCAGGCTTATACCACCACATCAAGCCTTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTAGCTGGAATGTCAGGCTTATACCACCACATCAAGCCTTACAC  250

seq1  CTATAATCATTCTTTAAGAACTAATTTGTTTTTAAAGCAGCAGTACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATCATTCTTTAAGAACTAATTTGTTTTTAAAGCAGCAGTACAAAA  300

seq1  GTCAATAAACACAATAGTGTGACAATTCTTCCATAATCAGCACATTCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAAACACAATAGTGTGACAATTCTTCCATAATCAGCACATTCGGC  350

seq1  AAACCCTTGGGAGAGAAGCAGGGATGTCTGTGGCACTTGCTCTGTCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTGGGAGAGAAGCAGGGATGTCTGTGGCACTTGCTCTGTCACTC  400

seq1  AGCTCAAGAGGGGCGGGACATATTTGAAGTTACATTTAAACCCATAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGAGGGGCGGGACATATTTGAAGTTACATTTAAACCCATAACAT  450

seq1  GATTTAAAATCTAAGAAAAATAGAACTTTTATTCAAAAGTAATTTAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAATCTAAGAAAAATAGAACTTTTATTCAAAAGTAATTTAATGC  500

seq1  TTTTTAAAATTATTTTTTAGGTTATTTTATTTTCTGTGCATAAATGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAATTATTTTTTAGGTTATTTTATTTTCTGTGCATAAATGTTTT  550

seq1  GCCTACCTGTACATAAATGCATTACATGCGTGCCTGCTCCTGCTGCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCTGTACATAAATGCATTACATGCGTGCCTGCTCCTGCTGCCACA  600

seq1  GAGGTAGGGCCTAGATTCAATCCCCAGCACTACACATTCAAAAATAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGGCCTAGATTCAATCCCCAGCACTACACATTCAAAAATAAGAA  650

seq1  AATTTATTGACATCAAATTATTCATGGGCCCATGACATGGTATAGAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTGACATCAAATTATTCATGGGCCCATGACATGGTATAGAGGTA  700

seq1  CATGCTTCGAAGCTTGATGACCTGAGTACAATCCTTGGGAACCACAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCGAAGCTTGATGACCTGAGTACAATCCTTGGGAACCACAGGGT  750

seq1  AGAAGGAGAAAATCAGCTGCTGCTGTTCTGTGACTTCTGTGCATGCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAAAATCAGCTGCTGCTGTTCTGTGACTTCTGTGCATGCACCA  800

seq1  CCCCACATAATGCACAGAAAATAAGAACCATAGAGACATTTTAACCCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACATAATGCACAGAAAATAAGAACCATAGAGACATTTTAACCCAGC  850

seq1  AACATGGATGCTCTGGCTAGGGGTCATATCAAAAGACCTTGTAGGTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGATGCTCTGGCTAGGGGTCATATCAAAAGACCTTGTAGGTCTGT  900

seq1  GTGATCCAGCTGAAATGACACA-CCTTTAATCCTTCTAACT-GGAATACA  948
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GTGATCCAGCTGAAATGACACACCCTTTAATCCTTCTAACTGGGAATACA  950

seq1  GATATGCCCTTAGTACACAGTTTGTAGAAGGGAGCAACTGTGTTCGAAAG  998
      ||||||||||||||||||||||||||||| ||||||||||||||   |||
seq2  GATATGCCCTTAGTACACAGTTTGTAGAACGGAGCAACTGTGTTTCGAAG  1000

seq1  GATAGACAAAGGGACGAATCAGAGAAATA-TTTGTCAGAATGAGTCAAGA  1047
      |||||||||||| ||| ||||||||| || |||||||| ||||||| |||
seq2  GATAGACAAAGGAACGGATCAGAGAATTATTTTGTCAG-ATGAGTC-AGA  1048

seq1  GATA-GGATACAGTCAACTCTTAAGAGAACA-GATATGAAAGAGAGGTAA  1095
      |||| |||||||||| |||||| ||| |||| ||||||||||  | ||||
seq2  GATAGGGATACAGTC-ACTCTT-AGA-AACAGGATATGAAAGGAAAGTAA  1095

seq1  CTTAAGAGATGGGGGCTGGGGGAGTTTTCCTGG-GACAGTTTTACAG  1141
      ||  || |||  |||||||||||| ||||||||  |||| |||||||
seq2  CT--AG-GAT--GGGCTGGGGGAG-TTTCCTGGCAACAGGTTTACAG  1136


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