BAC Information

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BAC

Clone NameB6Ng01-278B16
Chromosome3 (Build37)
Map Location 93,818,429 - 93,884,926
singlet/doubletdoublet
Overlap geneLOC668359, LOC100042761
Upstream geneCrct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356
Downstream geneLOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278B16.bB6Ng01-278B16.g
ACCGA078437GA078438
length1211,078
definitionB6Ng01-278B16.b B6Ng01-278B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,818,429 - 93,818,549)(93,883,901 - 93,884,926)
sequence
catcccaaattcccgtcattttcactgatgcaacaatgtttctcagaact
ctttccagaattctaacctggagaatggaaagggttttgtttgtttgttt
gttgtatggggttgggggatg
gaattcagtagaaattcagtaagaatgttaacattcaaatttacttctgg
tagagacagtgaaactaattaggcattacaaagaatggagcctgaatagc
tctgggctggtctgtagagtgtttacttgggacaatagccagtcttaccc
agagaagggaattcacaatggcctagggaataggtgggtttaccatgaaa
gagttagggaatccccctgaaacaggtttcttcactaggcccaaagaaac
agcataatcaggcatttactaaaaacccctggtggtgggcttaacaatag
actagcattacacctggctcccttcttagtagtagcagcctggtccctgc
ctacttttgatgtatacattccttttgtattgtgtcactgtcactcaaca
gatgtatctcccttggtttcttgttgctcttctgtataaaaagtttgatg
ctcgacttgaaaaattacactcagattctacacaatctctcatgtcgctt
ctgtctgttattcactgactcctccacctgcaactagagacttgttctac
acaatcagggaccaaaaacttaataaagtcttagaaagagggggcaaaag
gtcaagagacaaaacaacaggagatcgtcctcttagccttatgtaactta
gtttgagttggaattaattcagtatttcaaccaaaacctgaggttaggcc
caaataagggttctttaaaatattctccatacttacgaattcttgaaaaa
ctaaaaagatccttttatttttctttaatataagtaacttgaaaagtaca
atgccaagatagaaaagctaaattagattaaaaattaaaagcaaggccaa
gcatggtgacctttaattccagtactagggaggcagaggaaagtaaatct
ctgagtttgaggccagcctgatctagagaatgagttccaggacagctgga
accctgtcttgctcatcttctgatcaagccagaggagagcatggttcctt
gacagcactctgcaatcaagtggcattatcctggtgctggtggacagtgt
gccataaagtgctgatctgatgggctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93818429_93818549
seq2: B6Ng01-278B16.b_49_169

seq1  CATCCCAAATTCCCGTCATTTTCACTGATGCAACAATGTTTCTCAGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAAATTCCCGTCATTTTCACTGATGCAACAATGTTTCTCAGAACT  50

seq1  CTTTCCAGAATTCTAACCTGGAGAATGGAAAGGGTTTTGTTTGTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGAATTCTAACCTGGAGAATGGAAAGGGTTTTGTTTGTTTGTTT  100

seq1  GTTGTATGGGGTTGGGGGATG  121
      |||||||||||||||||||||
seq2  GTTGTATGGGGTTGGGGGATG  121

seq1: chr3_93883901_93884926
seq2: B6Ng01-278B16.g_122_1143 (reverse)

seq1  TGAGCCCATCAAGATCAGCCACTTTATGGCACACTGTCCACCAGCA-CAG  49
      |||||||||| ||||||| ||||||||||||||||||||||||||| |||
seq2  TGAGCCCATC-AGATCAG-CACTTTATGGCACACTGTCCACCAGCACCAG  48

seq1  GATAATGCCACCTTTGATTGCAGAGTGCTGTCAAGGAACCATGCTCTCCT  99
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  GATAATGCCAC--TTGATTGCAGAGTGCTGTCAAGGAACCATGCTCTCCT  96

seq1  CTGGCTTGATCAGAAGATGAGCAAGACAGGG-TACAGCTGTCCTGGAACT  148
      ||||||||||||||||||||||||||||||| | ||||||||||||||||
seq2  CTGGCTTGATCAGAAGATGAGCAAGACAGGGTTCCAGCTGTCCTGGAACT  146

seq1  CATTCTCTAGATCAGGCTGGTCTCAAACTCAGAGATTTACCTTCCTCTGC  198
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  CATTCTCTAGATCAGGCTGGCCTCAAACTCAGAGATTTACTTTCCTCTGC  196

seq1  CTCCCGAGTGCTGGAATTAAAGGTCATCATGCTTGGCCTTGCTTTTAATT  248
      ||||| ||| |||||||||||||||| |||||||||||||||||||||||
seq2  CTCCCTAGTACTGGAATTAAAGGTCACCATGCTTGGCCTTGCTTTTAATT  246

seq1  TTTAATCTAATTTAGCTTTTTTATCTTGGCACTGTCCTTTTCTAGTTACT  298
      |||||||||||||||||||| |||||||||| ||| |||||| |||||||
seq2  TTTAATCTAATTTAGCTTTTCTATCTTGGCATTGTACTTTTCAAGTTACT  296

seq1  TATATTAAAGAAAAATAAAAGGATCTTTTTAGTTTTTCAAGAATTCGTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATATTAAAGAAAAATAAAAGGATCTTTTTAGTTTTTCAAGAATTCG-TA  345

seq1  AGTATGGAGAATATTTTAAAGAACCCTTATTTGGGCCTAAACCTCAGGTT  398
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTATGGAGAATATTTTAAAGAACCCTTATTTGGGCCT-AACCTCAGGTT  394

seq1  TTGGTTGAAATACTGAATTAATTCCAACTCAAACTAAGTTACATAAGGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGAAATACTGAATTAATTCCAACTCAAACTAAGTTACATAAGGCT  444

seq1  AAGGGGACAATCTCCTGTTGTTTTGTCTCTTGACCTTTTGCCACCTCTTT  498
      ||| |||| ||||||||||||||||||||||||||||||||| |||||||
seq2  AAGAGGACGATCTCCTGTTGTTTTGTCTCTTGACCTTTTGCCCCCTCTTT  494

seq1  CTAAGACTTTATTAAGTTTTTGGTCCCTGTCTGTGTAGAATGAGTCTCTA  548
      |||||||||||||||||||||||||||||  |||||||||  ||||||||
seq2  CTAAGACTTTATTAAGTTTTTGGTCCCTGATTGTGTAGAACAAGTCTCTA  544

seq1  GTTGCAGGTGGAGGAGTCGGTGAATAACAGACAGAAGCTACAGGAGAGAT  598
      |||||||||||||||||| ||||||||||||||||||| ||| |||||||
seq2  GTTGCAGGTGGAGGAGTCAGTGAATAACAGACAGAAGCGACATGAGAGAT  594

seq1  TGTATAGTATCAGAGTGTAATTTTTCAAGTCAAGCATCAAACTTTTTATA  648
      ||| ||| ||| ||||||||||||||||||| ||||||||||||||||||
seq2  TGTGTAGAATCTGAGTGTAATTTTTCAAGTCGAGCATCAAACTTTTTATA  644

seq1  CAGAAGAGCAACAAGAAACCAAGGGAGATACATCTGTTGAGTGACAGTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGCAACAAGAAACCAAGGGAGATACATCTGTTGAGTGACAGTGA  694

seq1  CACAATACAAAAGGAATGTATACATCAAAAGTAGGCAGGGACCAGGCTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACAAAAGGAATGTATACATCAAAAGTAGGCAGGGACCAGGCTGC  744

seq1  TACCACTAAGAAGGGAGCCAGGTGTAATGCTAGTCTATTGTTAAGCCCAC  798
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTAAGAAGGGAGCCAGGTGTAATGCTAGTCTATTGTTAAGCCCAC  794

seq1  CACCAGGGGTTCTTAGTAAATGCCTGATTATGCTGTTTCTTTGGGCCTAG  848
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGGGTTTTTAGTAAATGCCTGATTATGCTGTTTCTTTGGGCCTAG  844

seq1  TGAAGAAACCTGTTTCAGGGGAATTCCCTAACTCTTTCTAGGTAAACCCA  898
      ||||||||||||||||||||| ||||||||||||||||  ||||||||||
seq2  TGAAGAAACCTGTTTCAGGGGGATTCCCTAACTCTTTCATGGTAAACCCA  894

seq1  CCTATTCCCTAGGCCATTGTGAATTCCCTTGTCTGGGTAAGACTGGCTAT  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTATTCCCTAGGCCATTGTGAATTCCCTTCTCTGGGTAAGACTGGCTAT  944

seq1  TGTCCCAAGTCAACACTCTACAGACCAGCCCAGAGCTATTCAGGCTCCAT  998
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAAGTAAACACTCTACAGACCAGCCCAGAGCTATTCAGGCTCCAT  994

seq1  TCTTTGTAATGCCTAATTAGTTTCACTG  1026
      ||||||||||||||||||||||||||||
seq2  TCTTTGTAATGCCTAATTAGTTTCACTG  1022